Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:56:11 (3511115): wrapper (7.7.26015): starting
10:56:11 (3511115): wrapper: running run_atlas (--nthreads 4)
[2026-05-05 10:56:11] Arguments: --nthreads 4
[2026-05-05 10:56:11] Threads: 4
[2026-05-05 10:56:11] Checking for CVMFS
[2026-05-05 10:56:11] No cvmfs_config command found, will try listing directly
[2026-05-05 10:56:11] CVMFS is ok
[2026-05-05 10:56:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-05 10:56:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-05 10:56:11] Further information can be found at the LHC@home message board.
[2026-05-05 10:56:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-05 10:56:11] Checking for apptainer binary...
[2026-05-05 10:56:11] which: no apptainer in ((null))
[2026-05-05 10:56:11] apptainer is not installed, using version from CVMFS
[2026-05-05 10:56:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-05 10:56:11] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-05-05 10:56:11] apptainer works
[2026-05-05 10:56:11] Set ATHENA_PROC_NUMBER=4
[2026-05-05 10:56:11] Set ATHENA_CORE_NUMBER=4
[2026-05-05 10:56:11] Starting ATLAS job with PandaID=7128755776
[2026-05-05 10:56:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-05 12:40:41]  *** The last 200 lines of the pilot log: ***
[2026-05-05 12:40:41]  filesize=261289
[2026-05-05 12:40:41]  filetype=log
[2026-05-05 12:40:41]  guid=8ff293ab-f30c-4d65-81a9-83893577508d
[2026-05-05 12:40:41]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-05 12:40:41]  is_altstaged=None
[2026-05-05 12:40:41]  is_tar=False
[2026-05-05 12:40:41]  lfn=log.50010673._000191.job.log.tgz.1
[2026-05-05 12:40:41]  mtime=0
[2026-05-05 12:40:41]  protocol_id=None
[2026-05-05 12:40:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-05 12:40:41]  replicas=None
[2026-05-05 12:40:41]  scope=mc23_13p6TeV
[2026-05-05 12:40:41]  status=None
[2026-05-05 12:40:41]  status_code=0
[2026-05-05 12:40:41]  storage_token=
[2026-05-05 12:40:41]  surl=/var/lib/boinc/var/slot64/slots/0/PanDA_Pilot-7128755776/log.50010673._000191.job.log.tgz.1
[2026-05-05 12:40:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/d5/log.50010673._000191.job.log.tgz.1
[2026-05-05 12:40:41]  workdir=None
[2026-05-05 12:40:41] ]
[2026-05-05 12:40:41] 2026-05-05 10:34:00,851 | INFO     | transferring file log.50010673._000191.job.log.tgz.1 from /var/lib/boinc/var/slot64/slots/0/PanDA_Pilot-7128755776/log.50010673._000191.job.log.tgz.1 to /var/lib/b
[2026-05-05 12:40:41] 2026-05-05 10:34:00,851 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot64/slots/0/PanDA_Pilot-7128755776/log.50010673._000191.job.log.tgz.1 /var/lib/boinc/var/slot64/slots/0/lo
[2026-05-05 12:40:41] 2026-05-05 10:34:00,876 | INFO     | adding to output.list: log.50010673._000191.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/d5/log.50010673._000191.job.log.tg
[2026-05-05 12:40:41] 2026-05-05 10:34:00,877 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-05 12:40:41] 2026-05-05 10:34:00,877 | INFO     | summary of transferred files:
[2026-05-05 12:40:41] 2026-05-05 10:34:00,877 | INFO     |  -- lfn=log.50010673._000191.job.log.tgz.1, status_code=0, status=transferred
[2026-05-05 12:40:41] 2026-05-05 10:34:00,877 | INFO     | stage-out finished correctly
[2026-05-05 12:40:41] 2026-05-05 10:34:02,694 | INFO     | monitor loop #422: job 0:7128755776 is in state 'finished'
[2026-05-05 12:40:41] 2026-05-05 10:34:02,695 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-05 12:40:41] 2026-05-05 10:34:03,610 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-05 12:40:41] 2026-05-05 10:34:05,198 | INFO     | monitor loop #423: job 0:7128755776 is in state 'finished'
[2026-05-05 12:40:41] 2026-05-05 10:34:05,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-05 12:40:41] 2026-05-05 10:34:06,427 | INFO     | job 7128755776 has state=finished
[2026-05-05 12:40:41] 2026-05-05 10:34:06,428 | INFO     | preparing for final server update for job 7128755776 in state='finished'
[2026-05-05 12:40:41] 2026-05-05 10:34:06,428 | INFO     | reading metadata from: /var/lib/boinc/var/slot64/slots/0/PanDA_Pilot-7128755776/jobReport.json
[2026-05-05 12:40:41] 2026-05-05 10:34:06,430 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot64/slots/0/workernode_map.json
[2026-05-05 12:40:41] 2026-05-05 10:34:06,431 | INFO     | this job has now completed (state=finished)
[2026-05-05 12:40:41] 2026-05-05 10:34:06,431 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-05 12:40:41] 2026-05-05 10:34:06,431 | INFO     | log transfer has been attempted: DONE
[2026-05-05 12:40:41] 2026-05-05 10:34:06,431 | INFO     | job 7128755776 has finished - writing final server update
[2026-05-05 12:40:41] 2026-05-05 10:34:06,431 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2886549/.job.ad'
[2026-05-05 12:40:41] 2026-05-05 10:34:06,432 | INFO     | total number of processed events: 400 (read)
[2026-05-05 12:40:41] 2026-05-05 10:34:06,453 | INFO     | using path: /var/lib/boinc/var/slot64/slots/0/PanDA_Pilot-7128755776/memory_monitor_summary.json (trf name=prmon)
[2026-05-05 12:40:41] 2026-05-05 10:34:06,454 | INFO     | extracted standard info from prmon json
[2026-05-05 12:40:41] 2026-05-05 10:34:06,454 | INFO     | extracted standard memory fields from prmon json
[2026-05-05 12:40:41] 2026-05-05 10:34:06,454 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-05 12:40:41] 2026-05-05 10:34:06,454 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-05 12:40:41] 2026-05-05 10:34:06,456 | INFO     | fitting pss+swap vs Time
[2026-05-05 12:40:41] 2026-05-05 10:34:06,457 | INFO     | sum of square deviations: 218571540.0
[2026-05-05 12:40:41] 2026-05-05 10:34:06,457 | INFO     | sum of deviations: -1097127516.9999998
[2026-05-05 12:40:41] 2026-05-05 10:34:06,457 | INFO     | mean x (centered): 0.0
[2026-05-05 12:40:41] 2026-05-05 10:34:06,457 | INFO     | mean y: 2351395.2359550563
[2026-05-05 12:40:41] 2026-05-05 10:34:06,457 | INFO     | intersect: 2351395.2359550563
[2026-05-05 12:40:41] 2026-05-05 10:34:06,458 | INFO     | chi2: 0.008394735637116745
[2026-05-05 12:40:41] 2026-05-05 10:34:06,458 | INFO     | current memory leak: -5.02 B/s (using 89 data points, chi2=0.01)
[2026-05-05 12:40:41] 2026-05-05 10:34:06,458 | INFO     | could have reported an average CPU frequency of 2757 MHz (7 samples)
[2026-05-05 12:40:41] 2026-05-05 10:34:06,458 | INFO     | ..............................
[2026-05-05 12:40:41] 2026-05-05 10:34:06,458 | INFO     | . Timing measurements:
[2026-05-05 12:40:41] 2026-05-05 10:34:06,458 | INFO     | . get job = 0 s
[2026-05-05 12:40:41] 2026-05-05 10:34:06,458 | INFO     | . initial setup = 7 s
[2026-05-05 12:40:41] 2026-05-05 10:34:06,458 | INFO     | . payload setup = 12 s
[2026-05-05 12:40:41] 2026-05-05 10:34:06,459 | INFO     | . stage-in = 0 s
[2026-05-05 12:40:41] 2026-05-05 10:34:06,459 | INFO     | . payload execution = 5820 s
[2026-05-05 12:40:41] 2026-05-05 10:34:06,459 | INFO     | . stage-out = 0 s
[2026-05-05 12:40:41] 2026-05-05 10:34:06,459 | INFO     | . log creation = 0 s
[2026-05-05 12:40:41] 2026-05-05 10:34:06,459 | INFO     | ..............................
[2026-05-05 12:40:41] 2026-05-05 10:34:06,543 | INFO     | 
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | job summary report
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | --------------------------------------------------
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | PanDA job id: 7128755776
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | task id: 50010673
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | errors: (none)
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | pilot state: finished 
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | transexitcode: 0
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | exeerrorcode: 0
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | exeerrordiag: 
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | exitcode: 0
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | exitmsg: OK
[2026-05-05 12:40:41] 2026-05-05 10:34:06,544 | INFO     | cpuconsumptiontime: 22165 s
[2026-05-05 12:40:41] 2026-05-05 10:34:06,545 | INFO     | nevents: 400
[2026-05-05 12:40:41] 2026-05-05 10:34:06,545 | INFO     | neventsw: 0
[2026-05-05 12:40:41] 2026-05-05 10:34:06,545 | INFO     | pid: 3520779
[2026-05-05 12:40:41] 2026-05-05 10:34:06,545 | INFO     | pgrp: 3520779
[2026-05-05 12:40:41] 2026-05-05 10:34:06,545 | INFO     | corecount: 4
[2026-05-05 12:40:41] 2026-05-05 10:34:06,545 | INFO     | event service: False
[2026-05-05 12:40:41] 2026-05-05 10:34:06,545 | INFO     | sizes: {0: 2270517, 1: 2272175, 11: 2272175, 5837: 2298969, 5838: 2307989, 5841: 2308045, 5844: 2308367}
[2026-05-05 12:40:41] 2026-05-05 10:34:06,545 | INFO     | --------------------------------------------------
[2026-05-05 12:40:41] 2026-05-05 10:34:06,545 | INFO     | 
[2026-05-05 12:40:41] 2026-05-05 10:34:06,545 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot64/slots/0
[2026-05-05 12:40:41] 2026-05-05 10:34:06,571 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,571 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,571 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,571 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,571 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,571 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,571 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,572 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,572 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,572 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,572 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,572 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,572 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,572 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,572 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,572 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,572 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,572 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-05 12:40:41] 2026-05-05 10:34:06,572 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,573 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-05 12:40:41] 2026-05-05 10:34:06,573 | INFO     | job 7128755776 has completed (purged errors)
[2026-05-05 12:40:41] 2026-05-05 10:34:06,573 | INFO     | overall cleanup function is called
[2026-05-05 12:40:41] 2026-05-05 10:34:07,582 | INFO     | --- collectZombieJob: --- 10, [3520779]
[2026-05-05 12:40:41] 2026-05-05 10:34:07,582 | INFO     | zombie collector waiting for pid 3520779
[2026-05-05 12:40:41] 2026-05-05 10:34:07,582 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-05 12:40:41] 2026-05-05 10:34:07,582 | INFO     | collected zombie processes
[2026-05-05 12:40:41] 2026-05-05 10:34:07,582 | INFO     | will attempt to kill all subprocesses of pid=3520779
[2026-05-05 12:40:41] 2026-05-05 10:34:07,914 | INFO     | process IDs to be killed: [3520779] (in reverse order)
[2026-05-05 12:40:41] 2026-05-05 10:34:08,081 | WARNING  | found no corresponding commands to process id(s)
[2026-05-05 12:40:41] 2026-05-05 10:34:08,082 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-05 12:40:41] 2026-05-05 10:34:08,101 | INFO     | did not find any defunct processes belonging to 3520779
[2026-05-05 12:40:41] 2026-05-05 10:34:08,114 | INFO     | did not find any defunct processes belonging to 3520779
[2026-05-05 12:40:41] 2026-05-05 10:34:08,114 | INFO     | Ready for new job
[2026-05-05 12:40:41] 2026-05-05 10:34:08,116 | INFO     | ***************************************
[2026-05-05 12:40:41] 2026-05-05 10:34:08,116 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-05 12:40:41] 2026-05-05 10:34:08,116 | INFO     | ***************************************
[2026-05-05 12:40:41] 2026-05-05 10:34:08,116 | INFO     | 
[2026-05-05 12:40:41] 2026-05-05 10:34:08,121 | INFO     | architecture information:
[2026-05-05 12:40:41] 2026-05-05 10:34:08,122 | INFO     | executing command: cat /etc/os-release
[2026-05-05 12:40:41] 2026-05-05 10:34:08,138 | INFO     | cat /etc/os-release:
[2026-05-05 12:40:41] NAME="CentOS Linux"
[2026-05-05 12:40:41] VERSION="7 (Core)"
[2026-05-05 12:40:41] ID="centos"
[2026-05-05 12:40:41] ID_LIKE="rhel fedora"
[2026-05-05 12:40:41] VERSION_ID="7"
[2026-05-05 12:40:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-05 12:40:41] ANSI_COLOR="0;31"
[2026-05-05 12:40:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-05 12:40:41] HOME_URL="https://www.centos.org/"
[2026-05-05 12:40:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-05 12:40:41] 
[2026-05-05 12:40:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-05 12:40:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-05 12:40:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-05 12:40:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-05 12:40:41] 
[2026-05-05 12:40:41] 2026-05-05 10:34:08,138 | INFO     | ***************************************
[2026-05-05 12:40:41] 2026-05-05 10:34:08,641 | INFO     | executing command: df -mP /var/lib/boinc/var/slot64/slots/0
[2026-05-05 12:40:41] 2026-05-05 10:34:08,662 | INFO     | sufficient remaining disk space (261458231296 B)
[2026-05-05 12:40:41] 2026-05-05 10:34:08,663 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-05 12:40:41] 2026-05-05 10:34:08,663 | INFO     | current server update state: UPDATING_FINAL
[2026-05-05 12:40:41] 2026-05-05 10:34:08,663 | INFO     | update_server=False
[2026-05-05 12:40:41] 2026-05-05 10:34:08,663 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-05 12:40:41] 2026-05-05 10:34:08,703 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-05 12:40:41] 2026-05-05 10:34:08,703 | INFO     | aborting loop
[2026-05-05 12:40:41] 2026-05-05 10:34:08,948 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-05 12:40:41] 2026-05-05 10:34:08,954 | INFO     | all payload control threads have been joined
[2026-05-05 12:40:41] 2026-05-05 10:34:09,272 | INFO     | all data control threads have been joined
[2026-05-05 12:40:41] 2026-05-05 10:34:09,656 | INFO     | all job control threads have been joined
[2026-05-05 12:40:41] 2026-05-05 10:34:09,668 | INFO     | [job] retrieve thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:09,701 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-05 12:40:41] 2026-05-05 10:34:09,708 | INFO     | [job] job monitor thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:09,915 | INFO     | [payload] execute_payloads thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:09,960 | INFO     | [payload] control thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:10,197 | INFO     | [job] validate thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:10,277 | INFO     | [data] control thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:10,402 | INFO     | [payload] failed_post thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:10,420 | INFO     | [job] create_data_payload thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:10,661 | INFO     | [job] control thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:10,680 | INFO     | [payload] validate_pre thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:10,934 | INFO     | [payload] validate_post thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:10,954 | INFO     | [data] copytool_out thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:10,962 | INFO     | [data] copytool_in thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:11,554 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-05 12:40:41] 2026-05-05 10:34:12,560 | INFO     | [job] queue monitor thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:13,702 | INFO     | [data] queue_monitor thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:19,315 | INFO     | job.realtimelogging is not enabled
[2026-05-05 12:40:41] 2026-05-05 10:34:20,320 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-05 12:40:41] 2026-05-05 10:34:39,741 | INFO     | PID=3515279 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-05 12:40:41] 2026-05-05 10:34:39,743 | INFO     | .. there are 8 such processes running
[2026-05-05 12:40:41] 2026-05-05 10:34:39,744 | INFO     | found 0 job(s) in 20 queues
[2026-05-05 12:40:41] 2026-05-05 10:34:39,744 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-05 12:40:41] 2026-05-05 10:34:39,744 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-05 12:40:41] 2026-05-05 10:34:39,751 | INFO     | [monitor] cgroup control has ended
[2026-05-05 12:40:41] 2026-05-05 10:34:40,794 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23126310016832)>', '<ExcThread(monitor, started 23126070269696)>']
[2026-05-05 12:40:41] 2026-05-05 10:34:41,754 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-05 12:40:41] 2026-05-05 10:34:41,754 | INFO     | [monitor] control thread has ended
[2026-05-05 12:40:41] 2026-05-05 10:34:45,819 | INFO     | all workflow threads have been joined
[2026-05-05 12:40:41] 2026-05-05 10:34:45,820 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-05 12:40:41] 2026-05-05 10:34:45,820 | INFO     | traces error code: 0
[2026-05-05 12:40:41] 2026-05-05 10:34:45,820 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-05 12:40:41] 2026-05-05 10:34:45,946 [wrapper] ==== pilot stdout END ====
[2026-05-05 12:40:41] 2026-05-05 10:34:45,948 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-05 12:40:41] 2026-05-05 10:34:45,950 [wrapper] pilotpid: 3515279
[2026-05-05 12:40:41] 2026-05-05 10:34:45,953 [wrapper] Pilot exit status: 0
[2026-05-05 12:40:41] 2026-05-05 10:34:45,962 [wrapper] pandaids: 7128755776
[2026-05-05 12:40:41] 2026-05-05 10:34:46,077 [wrapper] cleanup supervisor_pilot 3676084 3515280
[2026-05-05 12:40:41] 2026-05-05 10:34:46,080 [wrapper] Test setup, not cleaning
[2026-05-05 12:40:41] 2026-05-05 10:34:46,083 [wrapper] apfmon messages muted
[2026-05-05 12:40:41] 2026-05-05 10:34:46,085 [wrapper] ==== wrapper stdout END ====
[2026-05-05 12:40:41] 2026-05-05 10:34:46,087 [wrapper] ==== wrapper stderr END ====
[2026-05-05 12:40:41]  *** Error codes and diagnostics ***
[2026-05-05 12:40:41]     "exeErrorCode": 0,
[2026-05-05 12:40:41]     "pilotErrorCode": 0,
[2026-05-05 12:40:41]  *** Listing of results directory ***
[2026-05-05 12:40:41] total 405296
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc    683926 May  4 12:59 pilot3.tar.gz
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc      5631 May  4 13:17 queuedata.json
[2026-05-05 12:40:41] -rwx------. 1 boinc boinc     36322 May  4 13:20 runpilot2-wrapper.sh
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc       100 May  5 10:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-05 12:40:41] -rwxr-xr-x. 1 boinc boinc      7986 May  5 10:12 run_atlas
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc       105 May  5 10:12 job.xml
[2026-05-05 12:40:41] -rw-r--r--. 2 boinc boinc 244358295 May  5 10:56 EVNT.50010670._000008.pool.root.1
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc      6540 May  5 10:56 init_data.xml
[2026-05-05 12:40:41] -rw-r--r--. 2 boinc boinc     15667 May  5 10:56 start_atlas.sh
[2026-05-05 12:40:41] drwxrwx--x. 2 boinc boinc      4096 May  5 10:56 shared
[2026-05-05 12:40:41] -rw-r--r--. 2 boinc boinc    697394 May  5 10:56 input.tar.gz
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc         0 May  5 10:56 boinc_lockfile
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc      2503 May  5 10:56 pandaJob.out
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc   1001076 May  5 10:56 agis_schedconf.cvmfs.json
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc   1505918 May  5 10:56 agis_ddmendpoints.agis.ALL.json
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc       440 May  5 10:56 workernode_map.json
[2026-05-05 12:40:41] drwx------. 5 boinc boinc      4096 May  5 10:56 pilot3
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc 164886501 May  5 12:33 HITS.50010673._000191.pool.root.1
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc      1026 May  5 12:33 memory_monitor_summary.json
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc    261289 May  5 12:34 log.50010673._000191.job.log.tgz.1
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc        95 May  5 12:34 pilot_heartbeat.json
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc       487 May  5 12:34 boinc_task_state.xml
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc      6351 May  5 12:34 heartbeat_new.json
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc      6242 May  5 12:34 heartbeat.json
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc      4904 May  5 12:34 pilotlog.txt
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc    563016 May  5 12:34 log.50010673._000191.job.log.1
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc       357 May  5 12:34 output.list
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc       410 May  5 12:34 runtime_log
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc    839680 May  5 12:34 result.tar.gz
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc      8827 May  5 12:34 runtime_log.err
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc       662 May  5 12:34 80eedb41a021.diag
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc        27 May  5 12:40 wrapper_checkpoint.txt
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc      8192 May  5 12:40 boinc_mmap_file
[2026-05-05 12:40:41] -rw-r--r--. 1 boinc boinc     21028 May  5 12:40 stderr.txt
[2026-05-05 12:40:41] HITS file was successfully produced:
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc 164886501 May  5 12:33 shared/HITS.pool.root.1
[2026-05-05 12:40:41]  *** Contents of shared directory: ***
[2026-05-05 12:40:41] total 401184
[2026-05-05 12:40:41] -rw-r--r--. 2 boinc boinc 244358295 May  5 10:56 ATLAS.root_0
[2026-05-05 12:40:41] -rw-r--r--. 2 boinc boinc     15667 May  5 10:56 start_atlas.sh
[2026-05-05 12:40:41] -rw-r--r--. 2 boinc boinc    697394 May  5 10:56 input.tar.gz
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc 164886501 May  5 12:33 HITS.pool.root.1
[2026-05-05 12:40:41] -rw-------. 1 boinc boinc    839680 May  5 12:34 result.tar.gz
12:40:42 (3511115): run_atlas exited; CPU time 22437.228773
12:40:42 (3511115): called boinc_finish(0)

</stderr_txt>
]]>

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