Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:18:00 (825602): wrapper (7.7.26015): starting
02:18:00 (825602): wrapper: running run_atlas (--nthreads 4)
[2026-05-05 02:18:00] Arguments: --nthreads 4
[2026-05-05 02:18:00] Threads: 4
[2026-05-05 02:18:00] Checking for CVMFS
[2026-05-05 02:18:00] No cvmfs_config command found, will try listing directly
[2026-05-05 02:18:00] CVMFS is ok
[2026-05-05 02:18:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-05 02:18:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-05 02:18:00] Further information can be found at the LHC@home message board.
[2026-05-05 02:18:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-05 02:18:00] Checking for apptainer binary...
[2026-05-05 02:18:00] which: no apptainer in ((null))
[2026-05-05 02:18:00] apptainer is not installed, using version from CVMFS
[2026-05-05 02:18:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-05 02:18:00] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-05-05 02:18:00] apptainer works
[2026-05-05 02:18:00] Set ATHENA_PROC_NUMBER=4
[2026-05-05 02:18:00] Set ATHENA_CORE_NUMBER=4
[2026-05-05 02:18:00] Starting ATLAS job with PandaID=7128622209
[2026-05-05 02:18:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-05 04:36:34]  *** The last 200 lines of the pilot log: ***
[2026-05-05 04:36:34] 2026-05-05 02:35:37,605 | INFO     | preparing for final server update for job 7128622209 in state='finished'
[2026-05-05 04:36:34] 2026-05-05 02:35:37,605 | INFO     | reading metadata from: /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7128622209/jobReport.json
[2026-05-05 04:36:34] 2026-05-05 02:35:37,608 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot52/slots/0/workernode_map.json
[2026-05-05 04:36:34] 2026-05-05 02:35:37,609 | INFO     | this job has now completed (state=finished)
[2026-05-05 04:36:34] 2026-05-05 02:35:37,609 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-05 04:36:34] 2026-05-05 02:35:37,609 | INFO     | log transfer has been attempted: DONE
[2026-05-05 04:36:34] 2026-05-05 02:35:37,609 | INFO     | job 7128622209 has finished - writing final server update
[2026-05-05 04:36:34] 2026-05-05 02:35:37,610 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2779929/.job.ad'
[2026-05-05 04:36:34] 2026-05-05 02:35:37,610 | INFO     | total number of processed events: 400 (read)
[2026-05-05 04:36:34] 2026-05-05 02:35:37,622 | INFO     | using path: /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7128622209/memory_monitor_summary.json (trf name=prmon)
[2026-05-05 04:36:34] 2026-05-05 02:35:37,623 | INFO     | extracted standard info from prmon json
[2026-05-05 04:36:34] 2026-05-05 02:35:37,623 | INFO     | extracted standard memory fields from prmon json
[2026-05-05 04:36:34] 2026-05-05 02:35:37,623 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-05 04:36:34] 2026-05-05 02:35:37,624 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-05 04:36:34] 2026-05-05 02:35:37,626 | INFO     | fitting pss+swap vs Time
[2026-05-05 04:36:34] 2026-05-05 02:35:37,627 | INFO     | sum of square deviations: 762879420.0
[2026-05-05 04:36:34] 2026-05-05 02:35:37,627 | INFO     | sum of deviations: -23811102218.00001
[2026-05-05 04:36:34] 2026-05-05 02:35:37,627 | INFO     | mean x (centered): 0.0
[2026-05-05 04:36:34] 2026-05-05 02:35:37,628 | INFO     | mean y: 2425144.696296296
[2026-05-05 04:36:34] 2026-05-05 02:35:37,628 | INFO     | intersect: 2425144.696296296
[2026-05-05 04:36:34] 2026-05-05 02:35:37,628 | INFO     | chi2: 1.4706591235522135
[2026-05-05 04:36:34] 2026-05-05 02:35:37,628 | INFO     | sum of square deviations: 681212772.5
[2026-05-05 04:36:34] 2026-05-05 02:35:37,629 | INFO     | sum of deviations: -22230674385.000004
[2026-05-05 04:36:34] 2026-05-05 02:35:37,629 | INFO     | mean x (centered): 0.0
[2026-05-05 04:36:34] 2026-05-05 02:35:37,629 | INFO     | mean y: 2428097.2153846156
[2026-05-05 04:36:34] 2026-05-05 02:35:37,629 | INFO     | intersect: 2428097.2153846156
[2026-05-05 04:36:34] 2026-05-05 02:35:37,629 | INFO     | chi2: 1.4642573249051372
[2026-05-05 04:36:34] 2026-05-05 02:35:37,629 | INFO     | current chi2=1.4642573249051372 (change=0.4353013247293852 %)
[2026-05-05 04:36:34] 2026-05-05 02:35:37,629 | INFO     | right removable region: 129
[2026-05-05 04:36:34] 2026-05-05 02:35:37,630 | INFO     | sum of square deviations: 681212772.5
[2026-05-05 04:36:34] 2026-05-05 02:35:37,630 | INFO     | sum of deviations: -39250815725.5
[2026-05-05 04:36:34] 2026-05-05 02:35:37,630 | INFO     | mean x (centered): 0.0
[2026-05-05 04:36:34] 2026-05-05 02:35:37,630 | INFO     | mean y: 2453302.7153846156
[2026-05-05 04:36:34] 2026-05-05 02:35:37,631 | INFO     | intersect: 2453302.7153846156
[2026-05-05 04:36:34] 2026-05-05 02:35:37,631 | INFO     | chi2: 0.15103255563453016
[2026-05-05 04:36:34] 2026-05-05 02:35:37,631 | INFO     | current chi2=0.15103255563453016 (change=89.7302812585334 %)
[2026-05-05 04:36:34] 2026-05-05 02:35:37,631 | INFO     | sum of square deviations: 605592750.0
[2026-05-05 04:36:34] 2026-05-05 02:35:37,632 | INFO     | sum of deviations: -34079358610.0
[2026-05-05 04:36:34] 2026-05-05 02:35:37,632 | INFO     | mean x (centered): 0.0
[2026-05-05 04:36:34] 2026-05-05 02:35:37,632 | INFO     | mean y: 2442858.16
[2026-05-05 04:36:34] 2026-05-05 02:35:37,632 | INFO     | intersect: 2442858.16
[2026-05-05 04:36:34] 2026-05-05 02:35:37,632 | INFO     | chi2: 0.14878329271745314
[2026-05-05 04:36:34] 2026-05-05 02:35:37,632 | INFO     | current chi2=0.14878329271745314 (change=1.4892570066283009 %)
[2026-05-05 04:36:34] 2026-05-05 02:35:37,632 | INFO     | left removable region: 10
[2026-05-05 04:36:34] 2026-05-05 02:35:37,633 | INFO     | sum of square deviations: 522502820.0
[2026-05-05 04:36:34] 2026-05-05 02:35:37,633 | INFO     | sum of deviations: -31918964309.99999
[2026-05-05 04:36:34] 2026-05-05 02:35:37,633 | INFO     | mean x (centered): 0.0
[2026-05-05 04:36:34] 2026-05-05 02:35:37,633 | INFO     | mean y: 2447619.899159664
[2026-05-05 04:36:34] 2026-05-05 02:35:37,633 | INFO     | intersect: 2447619.899159664
[2026-05-05 04:36:34] 2026-05-05 02:35:37,634 | INFO     | chi2: 0.13459652251477053
[2026-05-05 04:36:34] 2026-05-05 02:35:37,634 | INFO     | current memory leak: -61.09 B/s (using 119 data points, chi2=0.13)
[2026-05-05 04:36:34] 2026-05-05 02:35:37,634 | INFO     | could have reported an average CPU frequency of 2539 MHz (8 samples)
[2026-05-05 04:36:34] 2026-05-05 02:35:37,634 | INFO     | ..............................
[2026-05-05 04:36:34] 2026-05-05 02:35:37,634 | INFO     | . Timing measurements:
[2026-05-05 04:36:34] 2026-05-05 02:35:37,635 | INFO     | . get job = 0 s
[2026-05-05 04:36:34] 2026-05-05 02:35:37,635 | INFO     | . initial setup = 5 s
[2026-05-05 04:36:34] 2026-05-05 02:35:37,635 | INFO     | . payload setup = 9 s
[2026-05-05 04:36:34] 2026-05-05 02:35:37,635 | INFO     | . stage-in = 0 s
[2026-05-05 04:36:34] 2026-05-05 02:35:37,635 | INFO     | . payload execution = 8212 s
[2026-05-05 04:36:34] 2026-05-05 02:35:37,635 | INFO     | . stage-out = 0 s
[2026-05-05 04:36:34] 2026-05-05 02:35:37,636 | INFO     | . log creation = 0 s
[2026-05-05 04:36:34] 2026-05-05 02:35:37,636 | INFO     | ..............................
[2026-05-05 04:36:34] 2026-05-05 02:35:38,208 | INFO     | 
[2026-05-05 04:36:34] 2026-05-05 02:35:38,209 | INFO     | job summary report
[2026-05-05 04:36:34] 2026-05-05 02:35:38,209 | INFO     | --------------------------------------------------
[2026-05-05 04:36:34] 2026-05-05 02:35:38,209 | INFO     | PanDA job id: 7128622209
[2026-05-05 04:36:34] 2026-05-05 02:35:38,209 | INFO     | task id: 50010700
[2026-05-05 04:36:34] 2026-05-05 02:35:38,209 | INFO     | errors: (none)
[2026-05-05 04:36:34] 2026-05-05 02:35:38,209 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-05 04:36:34] 2026-05-05 02:35:38,209 | INFO     | pilot state: finished 
[2026-05-05 04:36:34] 2026-05-05 02:35:38,209 | INFO     | transexitcode: 0
[2026-05-05 04:36:34] 2026-05-05 02:35:38,209 | INFO     | exeerrorcode: 0
[2026-05-05 04:36:34] 2026-05-05 02:35:38,209 | INFO     | exeerrordiag: 
[2026-05-05 04:36:34] 2026-05-05 02:35:38,209 | INFO     | exitcode: 0
[2026-05-05 04:36:34] 2026-05-05 02:35:38,210 | INFO     | exitmsg: OK
[2026-05-05 04:36:34] 2026-05-05 02:35:38,210 | INFO     | cpuconsumptiontime: 31561 s
[2026-05-05 04:36:34] 2026-05-05 02:35:38,210 | INFO     | nevents: 400
[2026-05-05 04:36:34] 2026-05-05 02:35:38,210 | INFO     | neventsw: 0
[2026-05-05 04:36:34] 2026-05-05 02:35:38,210 | INFO     | pid: 834614
[2026-05-05 04:36:34] 2026-05-05 02:35:38,210 | INFO     | pgrp: 834614
[2026-05-05 04:36:34] 2026-05-05 02:35:38,210 | INFO     | corecount: 4
[2026-05-05 04:36:34] 2026-05-05 02:35:38,210 | INFO     | event service: False
[2026-05-05 04:36:34] 2026-05-05 02:35:38,210 | INFO     | sizes: {0: 2270415, 1: 2272187, 11: 2272187, 8226: 2299924, 8227: 2309000, 8230: 2309138}
[2026-05-05 04:36:34] 2026-05-05 02:35:38,210 | INFO     | --------------------------------------------------
[2026-05-05 04:36:34] 2026-05-05 02:35:38,210 | INFO     | 
[2026-05-05 04:36:34] 2026-05-05 02:35:38,210 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot52/slots/0
[2026-05-05 04:36:34] 2026-05-05 02:35:38,232 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,232 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,232 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,232 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,232 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,232 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,232 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,233 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,233 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,233 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,233 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,233 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,233 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,233 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,233 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,233 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,233 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,233 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-05 04:36:34] 2026-05-05 02:35:38,234 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,234 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-05 04:36:34] 2026-05-05 02:35:38,234 | INFO     | job 7128622209 has completed (purged errors)
[2026-05-05 04:36:34] 2026-05-05 02:35:38,234 | INFO     | overall cleanup function is called
[2026-05-05 04:36:34] 2026-05-05 02:35:39,099 | INFO     | PID=829778 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-05 04:36:34] 2026-05-05 02:35:39,099 | INFO     | .. there are 8 such processes running
[2026-05-05 04:36:34] 2026-05-05 02:35:39,238 | INFO     | --- collectZombieJob: --- 10, [834614]
[2026-05-05 04:36:34] 2026-05-05 02:35:39,238 | INFO     | zombie collector waiting for pid 834614
[2026-05-05 04:36:34] 2026-05-05 02:35:39,238 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-05 04:36:34] 2026-05-05 02:35:39,238 | INFO     | collected zombie processes
[2026-05-05 04:36:34] 2026-05-05 02:35:39,238 | INFO     | will attempt to kill all subprocesses of pid=834614
[2026-05-05 04:36:34] 2026-05-05 02:35:39,502 | INFO     | process IDs to be killed: [834614] (in reverse order)
[2026-05-05 04:36:34] 2026-05-05 02:35:39,608 | WARNING  | found no corresponding commands to process id(s)
[2026-05-05 04:36:34] 2026-05-05 02:35:39,608 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-05 04:36:34] 2026-05-05 02:35:39,619 | INFO     | did not find any defunct processes belonging to 834614
[2026-05-05 04:36:34] 2026-05-05 02:35:39,629 | INFO     | did not find any defunct processes belonging to 834614
[2026-05-05 04:36:34] 2026-05-05 02:35:39,629 | INFO     | Ready for new job
[2026-05-05 04:36:34] 2026-05-05 02:35:39,631 | INFO     | ***************************************
[2026-05-05 04:36:34] 2026-05-05 02:35:39,631 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-05 04:36:34] 2026-05-05 02:35:39,631 | INFO     | ***************************************
[2026-05-05 04:36:34] 2026-05-05 02:35:39,632 | INFO     | 
[2026-05-05 04:36:34] 2026-05-05 02:35:39,635 | INFO     | architecture information:
[2026-05-05 04:36:34] 2026-05-05 02:35:39,635 | INFO     | executing command: cat /etc/os-release
[2026-05-05 04:36:34] 2026-05-05 02:35:39,650 | INFO     | cat /etc/os-release:
[2026-05-05 04:36:34] NAME="CentOS Linux"
[2026-05-05 04:36:34] VERSION="7 (Core)"
[2026-05-05 04:36:34] ID="centos"
[2026-05-05 04:36:34] ID_LIKE="rhel fedora"
[2026-05-05 04:36:34] VERSION_ID="7"
[2026-05-05 04:36:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-05 04:36:34] ANSI_COLOR="0;31"
[2026-05-05 04:36:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-05 04:36:34] HOME_URL="https://www.centos.org/"
[2026-05-05 04:36:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-05 04:36:34] 
[2026-05-05 04:36:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-05 04:36:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-05 04:36:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-05 04:36:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-05 04:36:34] 
[2026-05-05 04:36:34] 2026-05-05 02:35:39,651 | INFO     | ***************************************
[2026-05-05 04:36:34] 2026-05-05 02:35:40,154 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/0
[2026-05-05 04:36:34] 2026-05-05 02:35:40,170 | INFO     | sufficient remaining disk space (51331989504 B)
[2026-05-05 04:36:34] 2026-05-05 02:35:40,171 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-05 04:36:34] 2026-05-05 02:35:40,171 | INFO     | current server update state: UPDATING_FINAL
[2026-05-05 04:36:34] 2026-05-05 02:35:40,171 | INFO     | update_server=False
[2026-05-05 04:36:34] 2026-05-05 02:35:40,171 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-05 04:36:34] 2026-05-05 02:35:40,541 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-05 04:36:34] 2026-05-05 02:35:40,613 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-05 04:36:34] 2026-05-05 02:35:40,613 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-05 04:36:34] 2026-05-05 02:35:40,614 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-05 04:36:34] 2026-05-05 02:35:40,614 | INFO     | will abort loop
[2026-05-05 04:36:34] 2026-05-05 02:35:40,827 | INFO     | all payload control threads have been joined
[2026-05-05 04:36:34] 2026-05-05 02:35:41,124 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-05 04:36:34] 2026-05-05 02:35:41,176 | INFO     | [job] retrieve thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:41,193 | INFO     | all data control threads have been joined
[2026-05-05 04:36:34] 2026-05-05 02:35:41,243 | INFO     | [payload] validate_pre thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:41,304 | INFO     | all job control threads have been joined
[2026-05-05 04:36:34] 2026-05-05 02:35:41,569 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:41,578 | INFO     | [payload] validate_post thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:41,590 | INFO     | [data] copytool_in thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:41,615 | INFO     | [job] job monitor thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:41,833 | INFO     | [payload] control thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:41,976 | INFO     | [payload] failed_post thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:42,166 | INFO     | [job] validate thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:42,198 | INFO     | [data] control thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:42,310 | INFO     | [job] control thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:42,547 | INFO     | [data] copytool_out thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:42,567 | INFO     | [job] create_data_payload thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:42,591 | INFO     | [payload] execute_payloads thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:42,735 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-05 04:36:34] 2026-05-05 02:35:43,740 | INFO     | [job] queue monitor thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:35:45,130 | INFO     | [data] queue_monitor thread has finished
[2026-05-05 04:36:34] 2026-05-05 02:36:11,603 | INFO     | PID=829778 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-05 04:36:34] 2026-05-05 02:36:11,603 | INFO     | .. there are 8 such processes running
[2026-05-05 04:36:34] 2026-05-05 02:36:11,603 | INFO     | found 0 job(s) in 20 queues
[2026-05-05 04:36:34] 2026-05-05 02:36:11,604 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-05 04:36:34] 2026-05-05 02:36:11,604 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-05 04:36:34] 2026-05-05 02:36:29,128 | INFO     | [monitor] cgroup control has ended
[2026-05-05 04:36:34] 2026-05-05 02:36:29,373 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23051057792832)>', '<ExcThread(monitor, started 23050753931008)>']
[2026-05-05 04:36:34] 2026-05-05 02:36:29,684 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-05 04:36:34] 2026-05-05 02:36:29,684 | INFO     | [monitor] control thread has ended
[2026-05-05 04:36:34] 2026-05-05 02:36:34,398 | INFO     | all workflow threads have been joined
[2026-05-05 04:36:34] 2026-05-05 02:36:34,398 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-05 04:36:34] 2026-05-05 02:36:34,399 | INFO     | traces error code: 0
[2026-05-05 04:36:34] 2026-05-05 02:36:34,399 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-05 04:36:34] 2026-05-05 02:36:34,535 [wrapper] ==== pilot stdout END ====
[2026-05-05 04:36:34] 2026-05-05 02:36:34,538 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-05 04:36:34] 2026-05-05 02:36:34,540 [wrapper] pilotpid: 829778
[2026-05-05 04:36:34] 2026-05-05 02:36:34,543 [wrapper] Pilot exit status: 0
[2026-05-05 04:36:34] 2026-05-05 02:36:34,553 [wrapper] pandaids: 7128622209
[2026-05-05 04:36:34] 2026-05-05 02:36:34,623 [wrapper] cleanup supervisor_pilot 1003249 829779
[2026-05-05 04:36:34] 2026-05-05 02:36:34,626 [wrapper] Test setup, not cleaning
[2026-05-05 04:36:34] 2026-05-05 02:36:34,629 [wrapper] apfmon messages muted
[2026-05-05 04:36:34] 2026-05-05 02:36:34,631 [wrapper] ==== wrapper stdout END ====
[2026-05-05 04:36:34] 2026-05-05 02:36:34,634 [wrapper] ==== wrapper stderr END ====
[2026-05-05 04:36:34]  *** Error codes and diagnostics ***
[2026-05-05 04:36:34]     "exeErrorCode": 0,
[2026-05-05 04:36:34]     "pilotErrorCode": 0,
[2026-05-05 04:36:34]  *** Listing of results directory ***
[2026-05-05 04:36:34] total 412612
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc      5631 May  4 10:27 queuedata.json
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc    683926 May  4 10:27 pilot3.tar.gz
[2026-05-05 04:36:34] -rwx------. 1 boinc boinc     36322 May  4 10:30 runpilot2-wrapper.sh
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc       100 May  5 02:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-05 04:36:34] -rwxr-xr-x. 1 boinc boinc      7986 May  5 02:17 run_atlas
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc       105 May  5 02:17 job.xml
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc      6482 May  5 02:18 init_data.xml
[2026-05-05 04:36:34] -rw-r--r--. 2 boinc boinc 246155015 May  5 02:18 EVNT.50010698._000019.pool.root.1
[2026-05-05 04:36:34] -rw-r--r--. 2 boinc boinc     15667 May  5 02:18 start_atlas.sh
[2026-05-05 04:36:34] drwxrwx--x. 2 boinc boinc      4096 May  5 02:18 shared
[2026-05-05 04:36:34] -rw-r--r--. 2 boinc boinc    697400 May  5 02:18 input.tar.gz
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc         0 May  5 02:18 boinc_lockfile
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc      2514 May  5 02:18 pandaJob.out
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc   1002597 May  5 02:18 agis_schedconf.cvmfs.json
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc   1505918 May  5 02:18 agis_ddmendpoints.agis.ALL.json
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc       448 May  5 02:18 workernode_map.json
[2026-05-05 04:36:34] drwx------. 5 boinc boinc      4096 May  5 02:18 pilot3
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc 170067403 May  5 04:34 HITS.50010700._000465.pool.root.1
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc       487 May  5 04:35 boinc_task_state.xml
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc        95 May  5 04:35 pilot_heartbeat.json
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc      1034 May  5 04:35 memory_monitor_summary.json
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc    283755 May  5 04:35 log.50010700._000465.job.log.tgz.1
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc      6415 May  5 04:35 heartbeat_new.json
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc      6306 May  5 04:35 heartbeat.json
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc      8192 May  5 04:36 boinc_mmap_file
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc        27 May  5 04:36 wrapper_checkpoint.txt
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc      5016 May  5 04:36 pilotlog.txt
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc    792631 May  5 04:36 log.50010700._000465.job.log.1
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc       357 May  5 04:36 output.list
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc       410 May  5 04:36 runtime_log
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc   1095680 May  5 04:36 result.tar.gz
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc      8827 May  5 04:36 runtime_log.err
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc       662 May  5 04:36 5919e0e6d62f.diag
[2026-05-05 04:36:34] -rw-r--r--. 1 boinc boinc     21117 May  5 04:36 stderr.txt
[2026-05-05 04:36:34] HITS file was successfully produced:
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc 170067403 May  5 04:34 shared/HITS.pool.root.1
[2026-05-05 04:36:34]  *** Contents of shared directory: ***
[2026-05-05 04:36:34] total 408252
[2026-05-05 04:36:34] -rw-r--r--. 2 boinc boinc 246155015 May  5 02:18 ATLAS.root_0
[2026-05-05 04:36:34] -rw-r--r--. 2 boinc boinc     15667 May  5 02:18 start_atlas.sh
[2026-05-05 04:36:34] -rw-r--r--. 2 boinc boinc    697400 May  5 02:18 input.tar.gz
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc 170067403 May  5 04:34 HITS.pool.root.1
[2026-05-05 04:36:34] -rw-------. 1 boinc boinc   1095680 May  5 04:36 result.tar.gz
04:36:35 (825602): run_atlas exited; CPU time 31855.541538
04:36:35 (825602): called boinc_finish(0)

</stderr_txt>
]]>

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