Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:58:45 (201560): wrapper (7.7.26015): starting
00:58:45 (201560): wrapper: running run_atlas (--nthreads 12)
[2026-05-05 00:58:45] Arguments: --nthreads 12
[2026-05-05 00:58:45] Threads: 12
[2026-05-05 00:58:45] Checking for CVMFS
[2026-05-05 00:58:45] No cvmfs_config command found, will try listing directly
[2026-05-05 00:58:45] CVMFS is ok
[2026-05-05 00:58:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-05 00:58:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-05 00:58:45] Further information can be found at the LHC@home message board.
[2026-05-05 00:58:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-05 00:58:45] Checking for apptainer binary...
[2026-05-05 00:58:45] which: no apptainer in ((null))
[2026-05-05 00:58:45] apptainer is not installed, using version from CVMFS
[2026-05-05 00:58:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-05 00:58:45] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot108/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-05-05 00:58:45] apptainer works
[2026-05-05 00:58:45] Set ATHENA_PROC_NUMBER=12
[2026-05-05 00:58:45] Set ATHENA_CORE_NUMBER=12
[2026-05-05 00:58:45] Starting ATLAS job with PandaID=7128584208
[2026-05-05 00:58:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot108/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-05 01:20:11]  *** The last 200 lines of the pilot log: ***
[2026-05-05 01:20:11]  guid=8ff05387-eabe-4f85-b978-eb1f7de462eb
[2026-05-05 01:20:11]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-05 01:20:11]  is_altstaged=None
[2026-05-05 01:20:11]  is_tar=False
[2026-05-05 01:20:11]  lfn=log.50010997._001235.job.log.tgz.1
[2026-05-05 01:20:11]  mtime=0
[2026-05-05 01:20:11]  protocol_id=None
[2026-05-05 01:20:11]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-05 01:20:11]  replicas=None
[2026-05-05 01:20:11]  scope=mc23_13p6TeV
[2026-05-05 01:20:11]  status=None
[2026-05-05 01:20:11]  status_code=0
[2026-05-05 01:20:11]  storage_token=
[2026-05-05 01:20:11]  surl=/var/lib/boinc/var/slot108/slots/1/PanDA_Pilot-7128584208/log.50010997._001235.job.log.tgz.1
[2026-05-05 01:20:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d0/dc/log.50010997._001235.job.log.tgz.1
[2026-05-05 01:20:11]  workdir=None
[2026-05-05 01:20:11] ]
[2026-05-05 01:20:11] 2026-05-04 23:19:47,617 | INFO     | transferring file log.50010997._001235.job.log.tgz.1 from /var/lib/boinc/var/slot108/slots/1/PanDA_Pilot-7128584208/log.50010997._001235.job.log.tgz.1 to /var/lib/
[2026-05-05 01:20:11] 2026-05-04 23:19:47,617 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot108/slots/1/PanDA_Pilot-7128584208/log.50010997._001235.job.log.tgz.1 /var/lib/boinc/var/slot108/slots/1/
[2026-05-05 01:20:11] 2026-05-04 23:19:47,633 | INFO     | adding to output.list: log.50010997._001235.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d0/dc/log.50010997._001235.job.log.tg
[2026-05-05 01:20:11] 2026-05-04 23:19:47,634 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-05 01:20:11] 2026-05-04 23:19:47,634 | INFO     | summary of transferred files:
[2026-05-05 01:20:11] 2026-05-04 23:19:47,634 | INFO     |  -- lfn=log.50010997._001235.job.log.tgz.1, status_code=0, status=transferred
[2026-05-05 01:20:11] 2026-05-04 23:19:47,634 | INFO     | stage-out finished correctly
[2026-05-05 01:20:11] 2026-05-04 23:19:48,395 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-05 01:20:11] 2026-05-04 23:19:50,586 | INFO     | job 7128584208 has state=finished
[2026-05-05 01:20:11] 2026-05-04 23:19:50,586 | INFO     | preparing for final server update for job 7128584208 in state='finished'
[2026-05-05 01:20:11] 2026-05-04 23:19:50,587 | INFO     | reading metadata from: /var/lib/boinc/var/slot108/slots/1/PanDA_Pilot-7128584208/jobReport.json
[2026-05-05 01:20:11] 2026-05-04 23:19:50,588 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot108/slots/1/workernode_map.json
[2026-05-05 01:20:11] 2026-05-04 23:19:50,588 | INFO     | this job has now completed (state=finished)
[2026-05-05 01:20:11] 2026-05-04 23:19:50,588 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-05 01:20:11] 2026-05-04 23:19:50,588 | INFO     | log transfer has been attempted: DONE
[2026-05-05 01:20:11] 2026-05-04 23:19:50,588 | INFO     | job 7128584208 has finished - writing final server update
[2026-05-05 01:20:11] 2026-05-04 23:19:50,589 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1358776/.job.ad'
[2026-05-05 01:20:11] 2026-05-04 23:19:50,589 | INFO     | total number of processed events: 400 (read)
[2026-05-05 01:20:11] 2026-05-04 23:19:50,605 | INFO     | using path: /var/lib/boinc/var/slot108/slots/1/PanDA_Pilot-7128584208/memory_monitor_summary.json (trf name=prmon)
[2026-05-05 01:20:11] 2026-05-04 23:19:50,605 | INFO     | extracted standard info from prmon json
[2026-05-05 01:20:11] 2026-05-04 23:19:50,606 | INFO     | extracted standard memory fields from prmon json
[2026-05-05 01:20:11] 2026-05-04 23:19:50,606 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-05 01:20:11] 2026-05-04 23:19:50,606 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-05 01:20:11] 2026-05-04 23:19:50,606 | INFO     | fitting pss+swap vs Time
[2026-05-05 01:20:11] 2026-05-04 23:19:50,606 | INFO     | sum of square deviations: 846527.5
[2026-05-05 01:20:11] 2026-05-04 23:19:50,606 | INFO     | sum of deviations: -43750938.5
[2026-05-05 01:20:11] 2026-05-04 23:19:50,606 | INFO     | mean x (centered): 0.0
[2026-05-05 01:20:11] 2026-05-04 23:19:50,606 | INFO     | mean y: 2727541.9285714286
[2026-05-05 01:20:11] 2026-05-04 23:19:50,606 | INFO     | intersect: 2727541.9285714286
[2026-05-05 01:20:11] 2026-05-04 23:19:50,606 | INFO     | chi2: 0.0003939197953653508
[2026-05-05 01:20:11] 2026-05-04 23:19:50,607 | INFO     | current memory leak: -51.68 B/s (using 14 data points, chi2=0.00)
[2026-05-05 01:20:11] 2026-05-04 23:19:50,607 | INFO     | could have reported an average CPU frequency of 3625 MHz (4 samples)
[2026-05-05 01:20:11] 2026-05-04 23:19:50,607 | INFO     | ..............................
[2026-05-05 01:20:11] 2026-05-04 23:19:50,607 | INFO     | . Timing measurements:
[2026-05-05 01:20:11] 2026-05-04 23:19:50,607 | INFO     | . get job = 0 s
[2026-05-05 01:20:11] 2026-05-04 23:19:50,607 | INFO     | . initial setup = 3 s
[2026-05-05 01:20:11] 2026-05-04 23:19:50,607 | INFO     | . payload setup = 5 s
[2026-05-05 01:20:11] 2026-05-04 23:19:50,607 | INFO     | . stage-in = 0 s
[2026-05-05 01:20:11] 2026-05-04 23:19:50,607 | INFO     | . payload execution = 1233 s
[2026-05-05 01:20:11] 2026-05-04 23:19:50,607 | INFO     | . stage-out = 0 s
[2026-05-05 01:20:11] 2026-05-04 23:19:50,607 | INFO     | . log creation = 0 s
[2026-05-05 01:20:11] 2026-05-04 23:19:50,607 | INFO     | ..............................
[2026-05-05 01:20:11] 2026-05-04 23:19:50,862 | INFO     | 
[2026-05-05 01:20:11] 2026-05-04 23:19:50,862 | INFO     | job summary report
[2026-05-05 01:20:11] 2026-05-04 23:19:50,862 | INFO     | --------------------------------------------------
[2026-05-05 01:20:11] 2026-05-04 23:19:50,862 | INFO     | PanDA job id: 7128584208
[2026-05-05 01:20:11] 2026-05-04 23:19:50,862 | INFO     | task id: 50010997
[2026-05-05 01:20:11] 2026-05-04 23:19:50,862 | INFO     | errors: (none)
[2026-05-05 01:20:11] 2026-05-04 23:19:50,862 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-05 01:20:11] 2026-05-04 23:19:50,862 | INFO     | pilot state: finished 
[2026-05-05 01:20:11] 2026-05-04 23:19:50,862 | INFO     | transexitcode: 0
[2026-05-05 01:20:11] 2026-05-04 23:19:50,862 | INFO     | exeerrorcode: 0
[2026-05-05 01:20:11] 2026-05-04 23:19:50,862 | INFO     | exeerrordiag: 
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | exitcode: 0
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | exitmsg: OK
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | cpuconsumptiontime: 12860 s
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | nevents: 400
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | neventsw: 0
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | pid: 212027
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | pgrp: 212027
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | corecount: 12
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | event service: False
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | sizes: {0: 2270405, 1: 2272234, 11: 2272234, 1242: 2305910, 1243: 2305910, 1245: 2306104}
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | --------------------------------------------------
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | 
[2026-05-05 01:20:11] 2026-05-04 23:19:50,863 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot108/slots/1
[2026-05-05 01:20:11] 2026-05-04 23:19:50,880 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,880 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,880 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,880 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,880 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,880 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | job 7128584208 has completed (purged errors)
[2026-05-05 01:20:11] 2026-05-04 23:19:50,881 | INFO     | overall cleanup function is called
[2026-05-05 01:20:11] 2026-05-04 23:19:51,888 | INFO     | --- collectZombieJob: --- 10, [212027]
[2026-05-05 01:20:11] 2026-05-04 23:19:51,888 | INFO     | zombie collector waiting for pid 212027
[2026-05-05 01:20:11] 2026-05-04 23:19:51,888 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-05 01:20:11] 2026-05-04 23:19:51,888 | INFO     | collected zombie processes
[2026-05-05 01:20:11] 2026-05-04 23:19:51,888 | INFO     | will attempt to kill all subprocesses of pid=212027
[2026-05-05 01:20:11] 2026-05-04 23:19:53,384 | INFO     | process IDs to be killed: [212027] (in reverse order)
[2026-05-05 01:20:11] 2026-05-04 23:19:53,429 | INFO     | PID=206127 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-05 01:20:11] 2026-05-04 23:19:53,429 | INFO     | .. there are 9 such processes running
[2026-05-05 01:20:11] 2026-05-04 23:19:53,487 | WARNING  | found no corresponding commands to process id(s)
[2026-05-05 01:20:11] 2026-05-04 23:19:53,488 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-05 01:20:11] 2026-05-04 23:19:53,523 | INFO     | did not find any defunct processes belonging to 212027
[2026-05-05 01:20:11] 2026-05-04 23:19:53,555 | INFO     | did not find any defunct processes belonging to 212027
[2026-05-05 01:20:11] 2026-05-04 23:19:53,555 | INFO     | Ready for new job
[2026-05-05 01:20:11] 2026-05-04 23:19:53,557 | INFO     | ***************************************
[2026-05-05 01:20:11] 2026-05-04 23:19:53,557 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-05 01:20:11] 2026-05-04 23:19:53,557 | INFO     | ***************************************
[2026-05-05 01:20:11] 2026-05-04 23:19:53,557 | INFO     | 
[2026-05-05 01:20:11] 2026-05-04 23:19:53,566 | INFO     | architecture information:
[2026-05-05 01:20:11] 2026-05-04 23:19:53,566 | INFO     | executing command: cat /etc/os-release
[2026-05-05 01:20:11] 2026-05-04 23:19:53,578 | INFO     | cat /etc/os-release:
[2026-05-05 01:20:11] NAME="CentOS Linux"
[2026-05-05 01:20:11] VERSION="7 (Core)"
[2026-05-05 01:20:11] ID="centos"
[2026-05-05 01:20:11] ID_LIKE="rhel fedora"
[2026-05-05 01:20:11] VERSION_ID="7"
[2026-05-05 01:20:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-05 01:20:11] ANSI_COLOR="0;31"
[2026-05-05 01:20:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-05 01:20:11] HOME_URL="https://www.centos.org/"
[2026-05-05 01:20:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-05 01:20:11] 
[2026-05-05 01:20:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-05 01:20:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-05 01:20:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-05 01:20:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-05 01:20:11] 
[2026-05-05 01:20:11] 2026-05-04 23:19:53,579 | INFO     | ***************************************
[2026-05-05 01:20:11] 2026-05-04 23:19:53,619 | WARNING  | process 212027 can no longer be monitored (due to stat problems) - aborting
[2026-05-05 01:20:11] 2026-05-04 23:19:53,790 | INFO     | using path: /var/lib/boinc/var/slot108/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-05-05 01:20:11] 2026-05-04 23:19:53,970 | INFO     | number of running child processes to parent process 212027: 1
[2026-05-05 01:20:11] 2026-05-04 23:19:53,972 | INFO     | maximum number of monitored processes: 6
[2026-05-05 01:20:11] 2026-05-04 23:19:53,972 | INFO     | aborting job monitoring since job object (job id=7128584208) has expired
[2026-05-05 01:20:11] 2026-05-04 23:19:54,082 | INFO     | executing command: df -mP /var/lib/boinc/var/slot108/slots/1
[2026-05-05 01:20:11] 2026-05-04 23:19:54,092 | INFO     | sufficient remaining disk space (297896247296 B)
[2026-05-05 01:20:11] 2026-05-04 23:19:54,093 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-05 01:20:11] 2026-05-04 23:19:54,093 | INFO     | current server update state: UPDATING_FINAL
[2026-05-05 01:20:11] 2026-05-04 23:19:54,093 | INFO     | update_server=False
[2026-05-05 01:20:11] 2026-05-04 23:19:54,093 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-05 01:20:11] 2026-05-04 23:19:54,093 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-05-05 01:20:11] 2026-05-04 23:19:54,093 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-05 01:20:11] 2026-05-04 23:19:54,093 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-05 01:20:11] 2026-05-04 23:19:54,094 | INFO     | found 0 job(s) in 20 queues
[2026-05-05 01:20:11] 2026-05-04 23:19:54,094 | INFO     | will abort loop
[2026-05-05 01:20:11] 2026-05-04 23:19:54,094 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-05 01:20:11] 2026-05-04 23:19:54,094 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-05 01:20:11] 2026-05-04 23:19:54,381 | INFO     | all data control threads have been joined
[2026-05-05 01:20:11] 2026-05-04 23:19:54,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-05 01:20:11] 2026-05-04 23:19:54,719 | INFO     | all payload control threads have been joined
[2026-05-05 01:20:11] 2026-05-04 23:19:55,098 | INFO     | [job] retrieve thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:55,099 | INFO     | [job] job monitor thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:55,150 | INFO     | [payload] failed_post thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:55,273 | INFO     | [data] copytool_in thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:55,386 | INFO     | [data] control thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:55,661 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-05 01:20:11] 2026-05-04 23:19:55,692 | INFO     | [payload] execute_payloads thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:55,694 | INFO     | [monitor] cgroup control has ended
[2026-05-05 01:20:11] 2026-05-04 23:19:55,724 | INFO     | all job control threads have been joined
[2026-05-05 01:20:11] 2026-05-04 23:19:55,724 | INFO     | [payload] control thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:56,099 | INFO     | [data] copytool_out thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:56,239 | INFO     | [payload] validate_post thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:56,448 | INFO     | [job] validate thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:56,571 | INFO     | [job] create_data_payload thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:56,597 | INFO     | [payload] validate_pre thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:56,666 | INFO     | [job] queue monitor thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:56,729 | INFO     | [job] control thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:19:58,450 | INFO     | [data] queue_monitor thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:20:04,795 | INFO     | job.realtimelogging is not enabled
[2026-05-05 01:20:11] 2026-05-04 23:20:05,800 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-05 01:20:11] 2026-05-04 23:20:06,440 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22539259811648)>', '<ExcThread(monitor, started 22538953697024)>']
[2026-05-05 01:20:11] 2026-05-04 23:20:07,160 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-05 01:20:11] 2026-05-04 23:20:07,160 | INFO     | [monitor] control thread has ended
[2026-05-05 01:20:11] 2026-05-04 23:20:11,465 | INFO     | all workflow threads have been joined
[2026-05-05 01:20:11] 2026-05-04 23:20:11,465 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-05 01:20:11] 2026-05-04 23:20:11,466 | INFO     | traces error code: 0
[2026-05-05 01:20:11] 2026-05-04 23:20:11,466 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-05 01:20:11] 2026-05-04 23:20:11,728 [wrapper] ==== pilot stdout END ====
[2026-05-05 01:20:11] 2026-05-04 23:20:11,729 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-05 01:20:11] 2026-05-04 23:20:11,730 [wrapper] pilotpid: 206127
[2026-05-05 01:20:11] 2026-05-04 23:20:11,732 [wrapper] Pilot exit status: 0
[2026-05-05 01:20:11] 2026-05-04 23:20:11,737 [wrapper] pandaids: 7128584208
[2026-05-05 01:20:11] 2026-05-04 23:20:11,808 [wrapper] cleanup supervisor_pilot  297900 206128
[2026-05-05 01:20:11] 2026-05-04 23:20:11,811 [wrapper] Test setup, not cleaning
[2026-05-05 01:20:11] 2026-05-04 23:20:11,812 [wrapper] apfmon messages muted
[2026-05-05 01:20:11] 2026-05-04 23:20:11,813 [wrapper] ==== wrapper stdout END ====
[2026-05-05 01:20:11] 2026-05-04 23:20:11,814 [wrapper] ==== wrapper stderr END ====
[2026-05-05 01:20:11]  *** Error codes and diagnostics ***
[2026-05-05 01:20:11]     "exeErrorCode": 0,
[2026-05-05 01:20:11]     "pilotErrorCode": 0,
[2026-05-05 01:20:11]  *** Listing of results directory ***
[2026-05-05 01:20:11] total 403372
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc    683926 May  4 09:56 pilot3.tar.gz
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc      5631 May  4 09:56 queuedata.json
[2026-05-05 01:20:11] -rwx------. 1 boinc boinc     36322 May  4 09:56 runpilot2-wrapper.sh
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc       100 May  5 00:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-05 01:20:11] -rwxr-xr-x. 1 boinc boinc      7986 May  5 00:58 run_atlas
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc       105 May  5 00:58 job.xml
[2026-05-05 01:20:11] -rw-r--r--. 2 boinc boinc     15667 May  5 00:58 start_atlas.sh
[2026-05-05 01:20:11] drwxrwx--x. 2 boinc boinc      4096 May  5 00:58 shared
[2026-05-05 01:20:11] -rw-r--r--. 2 boinc boinc    697402 May  5 00:58 input.tar.gz
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc      6631 May  5 00:58 init_data.xml
[2026-05-05 01:20:11] -rw-r--r--. 2 boinc boinc 244963136 May  5 00:58 EVNT.50010994._000074.pool.root.1
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc         0 May  5 00:58 boinc_lockfile
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc      2540 May  5 00:58 pandaJob.out
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc   1002597 May  5 00:58 agis_schedconf.cvmfs.json
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc   1505918 May  5 00:58 agis_ddmendpoints.agis.ALL.json
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc       444 May  5 00:58 workernode_map.json
[2026-05-05 01:20:11] drwx------. 5 boinc boinc      4096 May  5 00:58 pilot3
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc        95 May  5 01:19 pilot_heartbeat.json
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc 162973605 May  5 01:19 HITS.50010997._001235.pool.root.1
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc       487 May  5 01:19 boinc_task_state.xml
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc      1025 May  5 01:19 memory_monitor_summary.json
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc    321804 May  5 01:19 log.50010997._001235.job.log.tgz.1
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc      6371 May  5 01:19 heartbeat_new.json
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc      6262 May  5 01:19 heartbeat.json
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc      8192 May  5 01:20 boinc_mmap_file
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc        27 May  5 01:20 wrapper_checkpoint.txt
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc      5165 May  5 01:20 pilotlog.txt
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc    167615 May  5 01:20 log.50010997._001235.job.log.1
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc       357 May  5 01:20 output.list
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc       410 May  5 01:20 runtime_log
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc    512000 May  5 01:20 result.tar.gz
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc      8846 May  5 01:20 runtime_log.err
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc       659 May  5 01:20 512867bafb6f.diag
[2026-05-05 01:20:11] -rw-r--r--. 1 boinc boinc     21202 May  5 01:20 stderr.txt
[2026-05-05 01:20:11] HITS file was successfully produced:
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc 162973605 May  5 01:19 shared/HITS.pool.root.1
[2026-05-05 01:20:11]  *** Contents of shared directory: ***
[2026-05-05 01:20:11] total 399588
[2026-05-05 01:20:11] -rw-r--r--. 2 boinc boinc     15667 May  5 00:58 start_atlas.sh
[2026-05-05 01:20:11] -rw-r--r--. 2 boinc boinc    697402 May  5 00:58 input.tar.gz
[2026-05-05 01:20:11] -rw-r--r--. 2 boinc boinc 244963136 May  5 00:58 ATLAS.root_0
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc 162973605 May  5 01:19 HITS.pool.root.1
[2026-05-05 01:20:11] -rw-------. 1 boinc boinc    512000 May  5 01:20 result.tar.gz
01:20:13 (201560): run_atlas exited; CPU time 12884.026039
01:20:13 (201560): called boinc_finish(0)

</stderr_txt>
]]>

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