Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:11:09 (1142895): wrapper (7.7.26015): starting
09:11:09 (1142895): wrapper: running run_atlas (--nthreads 12)
[2026-05-04 09:11:09] Arguments: --nthreads 12
[2026-05-04 09:11:09] Threads: 12
[2026-05-04 09:11:09] Checking for CVMFS
[2026-05-04 09:11:09] No cvmfs_config command found, will try listing directly
[2026-05-04 09:11:09] CVMFS is ok
[2026-05-04 09:11:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-04 09:11:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-04 09:11:09] Further information can be found at the LHC@home message board.
[2026-05-04 09:11:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-04 09:11:09] Checking for apptainer binary...
[2026-05-04 09:11:09] which: no apptainer in ((null))
[2026-05-04 09:11:09] apptainer is not installed, using version from CVMFS
[2026-05-04 09:11:09] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-04 09:11:09] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot36/slots/9/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-05-04 09:11:09] apptainer works
[2026-05-04 09:11:09] Set ATHENA_PROC_NUMBER=12
[2026-05-04 09:11:09] Set ATHENA_CORE_NUMBER=12
[2026-05-04 09:11:09] Starting ATLAS job with PandaID=7128347252
[2026-05-04 09:11:09] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot36/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-04 09:30:40]  *** The last 200 lines of the pilot log: ***
[2026-05-04 09:30:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-04 09:30:40]  replicas=None
[2026-05-04 09:30:40]  scope=mc23_13p6TeV
[2026-05-04 09:30:40]  status=None
[2026-05-04 09:30:40]  status_code=0
[2026-05-04 09:30:40]  storage_token=
[2026-05-04 09:30:40]  surl=/var/lib/boinc/var/slot36/slots/9/PanDA_Pilot-7128347252/log.50011096._001265.job.log.tgz.1
[2026-05-04 09:30:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/9d/log.50011096._001265.job.log.tgz.1
[2026-05-04 09:30:40]  workdir=None
[2026-05-04 09:30:40] ]
[2026-05-04 09:30:40] 2026-05-04 07:30:06,559 | INFO     | transferring file log.50011096._001265.job.log.tgz.1 from /var/lib/boinc/var/slot36/slots/9/PanDA_Pilot-7128347252/log.50011096._001265.job.log.tgz.1 to /var/lib/b
[2026-05-04 09:30:40] 2026-05-04 07:30:06,559 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot36/slots/9/PanDA_Pilot-7128347252/log.50011096._001265.job.log.tgz.1 /var/lib/boinc/var/slot36/slots/9/lo
[2026-05-04 09:30:40] 2026-05-04 07:30:06,570 | INFO     | adding to output.list: log.50011096._001265.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ff/9d/log.50011096._001265.job.log.tg
[2026-05-04 09:30:40] 2026-05-04 07:30:06,570 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-04 09:30:40] 2026-05-04 07:30:06,571 | INFO     | summary of transferred files:
[2026-05-04 09:30:40] 2026-05-04 07:30:06,571 | INFO     |  -- lfn=log.50011096._001265.job.log.tgz.1, status_code=0, status=transferred
[2026-05-04 09:30:40] 2026-05-04 07:30:06,571 | INFO     | stage-out finished correctly
[2026-05-04 09:30:40] 2026-05-04 07:30:06,595 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-04 09:30:40] 2026-05-04 07:30:06,635 | INFO     | job 7128347252 has state=finished
[2026-05-04 09:30:40] 2026-05-04 07:30:06,635 | INFO     | preparing for final server update for job 7128347252 in state='finished'
[2026-05-04 09:30:40] 2026-05-04 07:30:06,635 | INFO     | reading metadata from: /var/lib/boinc/var/slot36/slots/9/PanDA_Pilot-7128347252/jobReport.json
[2026-05-04 09:30:40] 2026-05-04 07:30:06,637 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot36/slots/9/workernode_map.json
[2026-05-04 09:30:40] 2026-05-04 07:30:06,637 | INFO     | this job has now completed (state=finished)
[2026-05-04 09:30:40] 2026-05-04 07:30:06,637 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-04 09:30:40] 2026-05-04 07:30:06,637 | INFO     | log transfer has been attempted: DONE
[2026-05-04 09:30:40] 2026-05-04 07:30:06,637 | INFO     | job 7128347252 has finished - writing final server update
[2026-05-04 09:30:40] 2026-05-04 07:30:06,637 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_600481/.job.ad'
[2026-05-04 09:30:40] 2026-05-04 07:30:06,637 | INFO     | total number of processed events: 400 (read)
[2026-05-04 09:30:40] 2026-05-04 07:30:06,653 | INFO     | using path: /var/lib/boinc/var/slot36/slots/9/PanDA_Pilot-7128347252/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 09:30:40] 2026-05-04 07:30:06,653 | INFO     | extracted standard info from prmon json
[2026-05-04 09:30:40] 2026-05-04 07:30:06,653 | INFO     | extracted standard memory fields from prmon json
[2026-05-04 09:30:40] 2026-05-04 07:30:06,653 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-04 09:30:40] 2026-05-04 07:30:06,654 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-04 09:30:40] 2026-05-04 07:30:06,654 | INFO     | fitting pss+swap vs Time
[2026-05-04 09:30:40] 2026-05-04 07:30:06,654 | INFO     | sum of square deviations: 532103.0
[2026-05-04 09:30:40] 2026-05-04 07:30:06,654 | INFO     | sum of deviations: 6491833.5
[2026-05-04 09:30:40] 2026-05-04 07:30:06,654 | INFO     | mean x (centered): 0.0
[2026-05-04 09:30:40] 2026-05-04 07:30:06,654 | INFO     | mean y: 2698928.4166666665
[2026-05-04 09:30:40] 2026-05-04 07:30:06,654 | INFO     | intersect: 2698928.4166666665
[2026-05-04 09:30:40] 2026-05-04 07:30:06,654 | INFO     | chi2: 2.280354597085896e-05
[2026-05-04 09:30:40] 2026-05-04 07:30:06,654 | INFO     | current memory leak: 12.20 B/s (using 12 data points, chi2=0.00)
[2026-05-04 09:30:40] 2026-05-04 07:30:06,655 | INFO     | could have reported an average CPU frequency of 3672 MHz (4 samples)
[2026-05-04 09:30:40] 2026-05-04 07:30:06,655 | INFO     | ..............................
[2026-05-04 09:30:40] 2026-05-04 07:30:06,655 | INFO     | . Timing measurements:
[2026-05-04 09:30:40] 2026-05-04 07:30:06,655 | INFO     | . get job = 0 s
[2026-05-04 09:30:40] 2026-05-04 07:30:06,655 | INFO     | . initial setup = 3 s
[2026-05-04 09:30:40] 2026-05-04 07:30:06,655 | INFO     | . payload setup = 5 s
[2026-05-04 09:30:40] 2026-05-04 07:30:06,655 | INFO     | . stage-in = 0 s
[2026-05-04 09:30:40] 2026-05-04 07:30:06,655 | INFO     | . payload execution = 1108 s
[2026-05-04 09:30:40] 2026-05-04 07:30:06,655 | INFO     | . stage-out = 0 s
[2026-05-04 09:30:40] 2026-05-04 07:30:06,655 | INFO     | . log creation = 0 s
[2026-05-04 09:30:40] 2026-05-04 07:30:06,655 | INFO     | ..............................
[2026-05-04 09:30:40] 2026-05-04 07:30:07,071 | INFO     | 
[2026-05-04 09:30:40] 2026-05-04 07:30:07,071 | INFO     | job summary report
[2026-05-04 09:30:40] 2026-05-04 07:30:07,071 | INFO     | --------------------------------------------------
[2026-05-04 09:30:40] 2026-05-04 07:30:07,071 | INFO     | PanDA job id: 7128347252
[2026-05-04 09:30:40] 2026-05-04 07:30:07,071 | INFO     | task id: 50011096
[2026-05-04 09:30:40] 2026-05-04 07:30:07,071 | INFO     | errors: (none)
[2026-05-04 09:30:40] 2026-05-04 07:30:07,071 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-04 09:30:40] 2026-05-04 07:30:07,071 | INFO     | pilot state: finished 
[2026-05-04 09:30:40] 2026-05-04 07:30:07,071 | INFO     | transexitcode: 0
[2026-05-04 09:30:40] 2026-05-04 07:30:07,071 | INFO     | exeerrorcode: 0
[2026-05-04 09:30:40] 2026-05-04 07:30:07,071 | INFO     | exeerrordiag: 
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | exitcode: 0
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | exitmsg: OK
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | cpuconsumptiontime: 11672 s
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | nevents: 400
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | neventsw: 0
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | pid: 1153282
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | pgrp: 1153282
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | corecount: 12
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | event service: False
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | sizes: {0: 2275338, 1: 2277110, 11: 2277110, 1117: 2310833}
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | --------------------------------------------------
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | 
[2026-05-04 09:30:40] 2026-05-04 07:30:07,072 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot36/slots/9
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,085 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,086 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,086 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-04 09:30:40] 2026-05-04 07:30:07,086 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,086 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-04 09:30:40] 2026-05-04 07:30:07,086 | INFO     | job 7128347252 has completed (purged errors)
[2026-05-04 09:30:40] 2026-05-04 07:30:07,086 | INFO     | overall cleanup function is called
[2026-05-04 09:30:40] 2026-05-04 07:30:08,092 | INFO     | --- collectZombieJob: --- 10, [1153282]
[2026-05-04 09:30:40] 2026-05-04 07:30:08,092 | INFO     | zombie collector waiting for pid 1153282
[2026-05-04 09:30:40] 2026-05-04 07:30:08,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-04 09:30:40] 2026-05-04 07:30:08,092 | INFO     | collected zombie processes
[2026-05-04 09:30:40] 2026-05-04 07:30:08,092 | INFO     | will attempt to kill all subprocesses of pid=1153282
[2026-05-04 09:30:40] 2026-05-04 07:30:08,272 | INFO     | process IDs to be killed: [1153282] (in reverse order)
[2026-05-04 09:30:40] 2026-05-04 07:30:08,363 | WARNING  | found no corresponding commands to process id(s)
[2026-05-04 09:30:40] 2026-05-04 07:30:08,363 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-04 09:30:40] 2026-05-04 07:30:08,382 | INFO     | did not find any defunct processes belonging to 1153282
[2026-05-04 09:30:40] 2026-05-04 07:30:08,393 | INFO     | did not find any defunct processes belonging to 1153282
[2026-05-04 09:30:40] 2026-05-04 07:30:08,393 | INFO     | Ready for new job
[2026-05-04 09:30:40] 2026-05-04 07:30:08,394 | INFO     | ***************************************
[2026-05-04 09:30:40] 2026-05-04 07:30:08,394 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-04 09:30:40] 2026-05-04 07:30:08,394 | INFO     | ***************************************
[2026-05-04 09:30:40] 2026-05-04 07:30:08,394 | INFO     | 
[2026-05-04 09:30:40] 2026-05-04 07:30:08,399 | INFO     | architecture information:
[2026-05-04 09:30:40] 2026-05-04 07:30:08,399 | INFO     | executing command: cat /etc/os-release
[2026-05-04 09:30:40] 2026-05-04 07:30:08,407 | INFO     | cat /etc/os-release:
[2026-05-04 09:30:40] NAME="CentOS Linux"
[2026-05-04 09:30:40] VERSION="7 (Core)"
[2026-05-04 09:30:40] ID="centos"
[2026-05-04 09:30:40] ID_LIKE="rhel fedora"
[2026-05-04 09:30:40] VERSION_ID="7"
[2026-05-04 09:30:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-04 09:30:40] ANSI_COLOR="0;31"
[2026-05-04 09:30:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-04 09:30:40] HOME_URL="https://www.centos.org/"
[2026-05-04 09:30:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-04 09:30:40] 
[2026-05-04 09:30:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-04 09:30:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-04 09:30:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-04 09:30:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-04 09:30:40] 
[2026-05-04 09:30:40] 2026-05-04 07:30:08,408 | INFO     | ***************************************
[2026-05-04 09:30:40] 2026-05-04 07:30:08,910 | INFO     | executing command: df -mP /var/lib/boinc/var/slot36/slots/9
[2026-05-04 09:30:40] 2026-05-04 07:30:08,923 | INFO     | sufficient remaining disk space (258212888576 B)
[2026-05-04 09:30:40] 2026-05-04 07:30:08,923 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-04 09:30:40] 2026-05-04 07:30:08,923 | INFO     | current server update state: UPDATING_FINAL
[2026-05-04 09:30:40] 2026-05-04 07:30:08,923 | INFO     | update_server=False
[2026-05-04 09:30:40] 2026-05-04 07:30:08,923 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-04 09:30:40] 2026-05-04 07:30:08,924 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-04 09:30:40] 2026-05-04 07:30:09,020 | INFO     | all payload control threads have been joined
[2026-05-04 09:30:40] 2026-05-04 07:30:09,154 | INFO     | all data control threads have been joined
[2026-05-04 09:30:40] 2026-05-04 07:30:09,597 | INFO     | job.realtimelogging is not enabled
[2026-05-04 09:30:40] 2026-05-04 07:30:09,600 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-04 09:30:40] 2026-05-04 07:30:09,863 | INFO     | all job control threads have been joined
[2026-05-04 09:30:40] 2026-05-04 07:30:09,928 | INFO     | [job] retrieve thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:09,944 | INFO     | [data] copytool_in thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:10,026 | INFO     | [payload] control thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:10,159 | INFO     | [data] control thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:10,206 | INFO     | [payload] execute_payloads thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:10,444 | INFO     | [payload] validate_post thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:10,600 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:10,787 | INFO     | [payload] failed_post thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:10,868 | INFO     | [job] control thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:11,116 | INFO     | [job] validate thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:11,231 | INFO     | [job] create_data_payload thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:11,318 | WARNING  | process 1153282 can no longer be monitored (due to stat problems) - aborting
[2026-05-04 09:30:40] 2026-05-04 07:30:11,344 | INFO     | [payload] validate_pre thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:11,472 | INFO     | using path: /var/lib/boinc/var/slot36/slots/9/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 09:30:40] 2026-05-04 07:30:11,472 | INFO     | using path: /var/lib/boinc/var/slot36/slots/9/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 09:30:40] 2026-05-04 07:30:11,472 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-05-04 09:30:40] 2026-05-04 07:30:11,473 | WARNING  | maxPSS not found in memory monitor output
[2026-05-04 09:30:40] 2026-05-04 07:30:11,473 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot36/slots/9/PanDA_Pilot-7128347252/payload.stdout) since it has not been created yet
[2026-05-04 09:30:40] 2026-05-04 07:30:11,473 | INFO     | executing command: df -mP /var/lib/boinc/var/slot36/slots/9
[2026-05-04 09:30:40] 2026-05-04 07:30:11,485 | INFO     | sufficient remaining disk space (258211840000 B)
[2026-05-04 09:30:40] 2026-05-04 07:30:11,485 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-05-04 09:30:40] 2026-05-04 07:30:11,486 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot36/slots/9/PanDA_Pilot-7128347252/HITS.50011096._001265.pool.root.1 since it does not exist
[2026-05-04 09:30:40] 2026-05-04 07:30:11,605 | INFO     | [data] copytool_out thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:11,674 | INFO     | number of running child processes to parent process 1153282: 1
[2026-05-04 09:30:40] 2026-05-04 07:30:11,674 | INFO     | maximum number of monitored processes: 6
[2026-05-04 09:30:40] 2026-05-04 07:30:11,674 | INFO     | aborting job monitoring since job object (job id=7128347252) has expired
[2026-05-04 09:30:40] 2026-05-04 07:30:11,674 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-04 09:30:40] 2026-05-04 07:30:11,674 | INFO     | will abort loop
[2026-05-04 09:30:40] 2026-05-04 07:30:11,708 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-04 09:30:40] 2026-05-04 07:30:12,680 | INFO     | [job] job monitor thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:12,713 | INFO     | [job] queue monitor thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:12,930 | INFO     | [data] queue_monitor thread has finished
[2026-05-04 09:30:40] 2026-05-04 07:30:19,563 | INFO     | [monitor] cgroup control has ended
[2026-05-04 09:30:40] 2026-05-04 07:30:20,561 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23058454353728)>', '<ExcThread(monitor, started 23058221123328)>']
[2026-05-04 09:30:40] 2026-05-04 07:30:25,586 | INFO     | all workflow threads have been joined
[2026-05-04 09:30:40] 2026-05-04 07:30:25,586 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-04 09:30:40] 2026-05-04 07:30:25,586 | INFO     | traces error code: 0
[2026-05-04 09:30:40] 2026-05-04 07:30:25,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-04 09:30:40] 2026-05-04 07:30:39,818 | INFO     | PID=1147442 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-04 09:30:40] 2026-05-04 07:30:39,819 | INFO     | .. there are 11 such processes running
[2026-05-04 09:30:40] 2026-05-04 07:30:39,820 | INFO     | found 0 job(s) in 20 queues
[2026-05-04 09:30:40] 2026-05-04 07:30:39,820 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-04 09:30:40] 2026-05-04 07:30:39,820 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-04 09:30:40] 2026-05-04 07:30:39,820 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-04 09:30:40] 2026-05-04 07:30:39,820 | INFO     | [monitor] control thread has ended
[2026-05-04 09:30:40] 2026-05-04 07:30:40,062 [wrapper] ==== pilot stdout END ====
[2026-05-04 09:30:40] 2026-05-04 07:30:40,064 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-04 09:30:40] 2026-05-04 07:30:40,066 [wrapper] pilotpid: 1147442
[2026-05-04 09:30:40] 2026-05-04 07:30:40,067 [wrapper] Pilot exit status: 0
[2026-05-04 09:30:40] 2026-05-04 07:30:40,073 [wrapper] pandaids: 7128347252
[2026-05-04 09:30:40] 2026-05-04 07:30:40,151 [wrapper] cleanup supervisor_pilot 1300697 1147443
[2026-05-04 09:30:40] 2026-05-04 07:30:40,153 [wrapper] Test setup, not cleaning
[2026-05-04 09:30:40] 2026-05-04 07:30:40,154 [wrapper] apfmon messages muted
[2026-05-04 09:30:40] 2026-05-04 07:30:40,156 [wrapper] ==== wrapper stdout END ====
[2026-05-04 09:30:40] 2026-05-04 07:30:40,157 [wrapper] ==== wrapper stderr END ====
[2026-05-04 09:30:40]  *** Error codes and diagnostics ***
[2026-05-04 09:30:40]     "exeErrorCode": 0,
[2026-05-04 09:30:40]     "pilotErrorCode": 0,
[2026-05-04 09:30:40]  *** Listing of results directory ***
[2026-05-04 09:30:40] total 399204
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc    683926 May  4 05:03 pilot3.tar.gz
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc      5631 May  4 05:21 queuedata.json
[2026-05-04 09:30:40] -rwx------. 1 boinc boinc     36322 May  4 05:21 runpilot2-wrapper.sh
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc       100 May  4 09:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-04 09:30:40] -rwxr-xr-x. 1 boinc boinc      7986 May  4 09:11 run_atlas
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc       105 May  4 09:11 job.xml
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc      6626 May  4 09:11 init_data.xml
[2026-05-04 09:30:40] -rw-r--r--. 2 boinc boinc 244226247 May  4 09:11 EVNT.50011094._000043.pool.root.1
[2026-05-04 09:30:40] -rw-r--r--. 2 boinc boinc     15667 May  4 09:11 start_atlas.sh
[2026-05-04 09:30:40] drwxrwx--x. 2 boinc boinc      4096 May  4 09:11 shared
[2026-05-04 09:30:40] -rw-r--r--. 2 boinc boinc    697403 May  4 09:11 input.tar.gz
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc         0 May  4 09:11 boinc_lockfile
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc      2515 May  4 09:11 pandaJob.out
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc   1003025 May  4 09:11 agis_schedconf.cvmfs.json
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc   1508687 May  4 09:11 agis_ddmendpoints.agis.ALL.json
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc       444 May  4 09:11 workernode_map.json
[2026-05-04 09:30:40] drwx------. 5 boinc boinc      4096 May  4 09:11 pilot3
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc       487 May  4 09:29 boinc_task_state.xml
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc 159436285 May  4 09:29 HITS.50011096._001265.pool.root.1
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc      1032 May  4 09:30 memory_monitor_summary.json
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc    339243 May  4 09:30 log.50011096._001265.job.log.tgz.1
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc      6378 May  4 09:30 heartbeat_new.json
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc      6269 May  4 09:30 heartbeat.json
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc        27 May  4 09:30 wrapper_checkpoint.txt
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc       823 May  4 09:30 pilotlog.txt
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc        95 May  4 09:30 pilot_heartbeat.json
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc      8192 May  4 09:30 boinc_mmap_file
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc    157198 May  4 09:30 log.50011096._001265.job.log.1
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc       357 May  4 09:30 output.list
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc       410 May  4 09:30 runtime_log
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc    512000 May  4 09:30 result.tar.gz
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc       659 May  4 09:30 10d01194cbcf.diag
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc      8829 May  4 09:30 runtime_log.err
[2026-05-04 09:30:40] -rw-r--r--. 1 boinc boinc     21863 May  4 09:30 stderr.txt
[2026-05-04 09:30:40] HITS file was successfully produced:
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc 159436285 May  4 09:29 shared/HITS.pool.root.1
[2026-05-04 09:30:40]  *** Contents of shared directory: ***
[2026-05-04 09:30:40] total 395412
[2026-05-04 09:30:40] -rw-r--r--. 2 boinc boinc 244226247 May  4 09:11 ATLAS.root_0
[2026-05-04 09:30:40] -rw-r--r--. 2 boinc boinc     15667 May  4 09:11 start_atlas.sh
[2026-05-04 09:30:40] -rw-r--r--. 2 boinc boinc    697403 May  4 09:11 input.tar.gz
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc 159436285 May  4 09:29 HITS.pool.root.1
[2026-05-04 09:30:40] -rw-------. 1 boinc boinc    512000 May  4 09:30 result.tar.gz
09:30:41 (1142895): run_atlas exited; CPU time 11689.288301
09:30:41 (1142895): called boinc_finish(0)

</stderr_txt>
]]>

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