Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:21:27 (11200): wrapper (7.7.26015): starting
12:21:27 (11200): wrapper: running run_atlas (--nthreads 8)
[2026-05-04 12:21:27] Arguments: --nthreads 8
[2026-05-04 12:21:27] Threads: 8
[2026-05-04 12:21:27] Checking for CVMFS
[2026-05-04 12:21:28] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-04 12:21:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-04 12:21:31] Running cvmfs_config stat atlas.cern.ch
[2026-05-04 12:21:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-04 12:21:32] 2.11.2.0 15381 26957 99052 159202 1 53 17658595 25165825 96 130560 0 10354000 99.931 6777896 8988 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-04 12:21:32] CVMFS is ok
[2026-05-04 12:21:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-04 12:21:32] Checking for apptainer binary...
[2026-05-04 12:21:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-04 12:21:32] Running /usr/bin/apptainer --version
[2026-05-04 12:21:33] apptainer version 1.3.2-1.el7
[2026-05-04 12:21:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-04 12:21:50] cg-vwn426.simple-grid.lan
[2026-05-04 12:21:50] apptainer works
[2026-05-04 12:21:50] Set ATHENA_PROC_NUMBER=8
[2026-05-04 12:21:50] Set ATHENA_CORE_NUMBER=8
[2026-05-04 12:21:50] Starting ATLAS job with PandaID=7128314632
[2026-05-04 12:21:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-04 16:12:48]  *** The last 200 lines of the pilot log: ***
[2026-05-04 16:12:49] 2026-05-04 14:11:43,385 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-04 16:12:49] 2026-05-04 14:11:43,385 | INFO     | log transfer has been attempted: DONE
[2026-05-04 16:12:49] 2026-05-04 14:11:43,385 | INFO     | job 7128314632 has finished - writing final server update
[2026-05-04 16:12:49] 2026-05-04 14:11:43,386 | INFO     | total number of processed events: 400 (read)
[2026-05-04 16:12:49] 2026-05-04 14:11:43,388 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-7128314632/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 16:12:49] 2026-05-04 14:11:43,388 | INFO     | extracted standard info from prmon json
[2026-05-04 16:12:49] 2026-05-04 14:11:43,389 | INFO     | extracted standard memory fields from prmon json
[2026-05-04 16:12:49] 2026-05-04 14:11:43,389 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-04 16:12:49] 2026-05-04 14:11:43,389 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-04 16:12:49] 2026-05-04 14:11:43,394 | INFO     | fitting pss+swap vs Time
[2026-05-04 16:12:49] 2026-05-04 14:11:43,394 | INFO     | sum of square deviations: 3081657780.0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,396 | INFO     | sum of deviations: 104031092079.00002
[2026-05-04 16:12:49] 2026-05-04 14:11:43,396 | INFO     | mean x (centered): 0.0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,396 | INFO     | mean y: 2426427.930232558
[2026-05-04 16:12:49] 2026-05-04 14:11:43,397 | INFO     | intersect: 2426427.930232558
[2026-05-04 16:12:49] 2026-05-04 14:11:43,397 | INFO     | chi2: 9.589943336018857
[2026-05-04 16:12:49] 2026-05-04 14:11:43,397 | INFO     | sum of square deviations: 2871616632.5
[2026-05-04 16:12:49] 2026-05-04 14:11:43,402 | INFO     | sum of deviations: 115676928795.0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,402 | INFO     | mean x (centered): 0.0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,403 | INFO     | mean y: 2434687.761904762
[2026-05-04 16:12:49] 2026-05-04 14:11:43,403 | INFO     | intersect: 2434687.761904762
[2026-05-04 16:12:49] 2026-05-04 14:11:43,403 | INFO     | chi2: 8.927878544000496
[2026-05-04 16:12:49] 2026-05-04 14:11:43,403 | INFO     | current chi2=8.927878544000496 (change=6.903740395750961 %)
[2026-05-04 16:12:49] 2026-05-04 14:11:43,403 | INFO     | right removable region: 209
[2026-05-04 16:12:49] 2026-05-04 14:11:43,404 | INFO     | sum of square deviations: 2871616632.5
[2026-05-04 16:12:49] 2026-05-04 14:11:43,406 | INFO     | sum of deviations: 25026519013.499996
[2026-05-04 16:12:49] 2026-05-04 14:11:43,406 | INFO     | mean x (centered): 0.0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,406 | INFO     | mean y: 2483795.6428571427
[2026-05-04 16:12:49] 2026-05-04 14:11:43,406 | INFO     | intersect: 2483795.6428571427
[2026-05-04 16:12:49] 2026-05-04 14:11:43,406 | INFO     | chi2: 3.7732502101697523
[2026-05-04 16:12:49] 2026-05-04 14:11:43,407 | INFO     | current chi2=3.7732502101697523 (change=60.65409275154102 %)
[2026-05-04 16:12:49] 2026-05-04 14:11:43,407 | INFO     | sum of square deviations: 2671343110.0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,409 | INFO     | sum of deviations: -31518838957.999992
[2026-05-04 16:12:49] 2026-05-04 14:11:43,409 | INFO     | mean x (centered): 0.0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,409 | INFO     | mean y: 2526766.741463415
[2026-05-04 16:12:49] 2026-05-04 14:11:43,409 | INFO     | intersect: 2526766.741463415
[2026-05-04 16:12:49] 2026-05-04 14:11:43,409 | INFO     | chi2: 1.0113805337443726
[2026-05-04 16:12:49] 2026-05-04 14:11:43,410 | INFO     | current chi2=1.0113805337443726 (change=73.19603849703695 %)
[2026-05-04 16:12:49] 2026-05-04 14:11:43,410 | INFO     | sum of square deviations: 2480604650.0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,412 | INFO     | sum of deviations: -36191663041.5
[2026-05-04 16:12:49] 2026-05-04 14:11:43,412 | INFO     | mean x (centered): 0.0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,412 | INFO     | mean y: 2530405.675
[2026-05-04 16:12:49] 2026-05-04 14:11:43,412 | INFO     | intersect: 2530405.675
[2026-05-04 16:12:49] 2026-05-04 14:11:43,413 | INFO     | chi2: 0.9162209449108998
[2026-05-04 16:12:49] 2026-05-04 14:11:43,413 | INFO     | current chi2=0.9162209449108998 (change=9.408880797929669 %)
[2026-05-04 16:12:49] 2026-05-04 14:11:43,413 | INFO     | left removable region: 15
[2026-05-04 16:12:49] 2026-05-04 14:11:43,413 | INFO     | sum of square deviations: 2263977332.5
[2026-05-04 16:12:49] 2026-05-04 14:11:43,415 | INFO     | sum of deviations: -22057706780.5
[2026-05-04 16:12:49] 2026-05-04 14:11:43,415 | INFO     | mean x (centered): 0.0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,415 | INFO     | mean y: 2542062.62371134
[2026-05-04 16:12:49] 2026-05-04 14:11:43,415 | INFO     | intersect: 2542062.62371134
[2026-05-04 16:12:49] 2026-05-04 14:11:43,416 | INFO     | chi2: 0.12518303735622907
[2026-05-04 16:12:49] 2026-05-04 14:11:43,416 | INFO     | current memory leak: -9.74 B/s (using 194 data points, chi2=0.13)
[2026-05-04 16:12:49] 2026-05-04 14:11:43,416 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-05-04 16:12:49] 2026-05-04 14:11:43,417 | INFO     | ..............................
[2026-05-04 16:12:49] 2026-05-04 14:11:43,417 | INFO     | . Timing measurements:
[2026-05-04 16:12:49] 2026-05-04 14:11:43,417 | INFO     | . get job = 0 s
[2026-05-04 16:12:49] 2026-05-04 14:11:43,417 | INFO     | . initial setup = 116 s
[2026-05-04 16:12:49] 2026-05-04 14:11:43,417 | INFO     | . payload setup = 179 s
[2026-05-04 16:12:49] 2026-05-04 14:11:43,417 | INFO     | . stage-in = 0 s
[2026-05-04 16:12:49] 2026-05-04 14:11:43,417 | INFO     | . payload execution = 13204 s
[2026-05-04 16:12:49] 2026-05-04 14:11:43,418 | INFO     | . stage-out = 3 s
[2026-05-04 16:12:49] 2026-05-04 14:11:43,418 | INFO     | . log creation = 1 s
[2026-05-04 16:12:49] 2026-05-04 14:11:43,418 | INFO     | ..............................
[2026-05-04 16:12:49] 2026-05-04 14:11:43,553 | INFO     | 
[2026-05-04 16:12:49] 2026-05-04 14:11:43,553 | INFO     | job summary report
[2026-05-04 16:12:49] 2026-05-04 14:11:43,553 | INFO     | --------------------------------------------------
[2026-05-04 16:12:49] 2026-05-04 14:11:43,553 | INFO     | PanDA job id: 7128314632
[2026-05-04 16:12:49] 2026-05-04 14:11:43,553 | INFO     | task id: 50010972
[2026-05-04 16:12:49] 2026-05-04 14:11:43,553 | INFO     | errors: (none)
[2026-05-04 16:12:49] 2026-05-04 14:11:43,553 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-04 16:12:49] 2026-05-04 14:11:43,553 | INFO     | pilot state: finished 
[2026-05-04 16:12:49] 2026-05-04 14:11:43,554 | INFO     | transexitcode: 0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,554 | INFO     | exeerrorcode: 0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,554 | INFO     | exeerrordiag: 
[2026-05-04 16:12:49] 2026-05-04 14:11:43,554 | INFO     | exitcode: 0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,554 | INFO     | exitmsg: OK
[2026-05-04 16:12:49] 2026-05-04 14:11:43,554 | INFO     | cpuconsumptiontime: 49402 s
[2026-05-04 16:12:49] 2026-05-04 14:11:43,554 | INFO     | nevents: 400
[2026-05-04 16:12:49] 2026-05-04 14:11:43,554 | INFO     | neventsw: 0
[2026-05-04 16:12:49] 2026-05-04 14:11:43,554 | INFO     | pid: 19695
[2026-05-04 16:12:49] 2026-05-04 14:11:43,554 | INFO     | pgrp: 19695
[2026-05-04 16:12:49] 2026-05-04 14:11:43,554 | INFO     | corecount: 8
[2026-05-04 16:12:49] 2026-05-04 14:11:43,554 | INFO     | event service: False
[2026-05-04 16:12:49] 2026-05-04 14:11:43,555 | INFO     | sizes: {0: 2269694, 1: 2270379, 2: 2270780, 3: 2272208, 13: 2272236, 13387: 2302387, 13388: 2302514, 13391: 2311563, 13392: 2311619, 13394: 2311813}
[2026-05-04 16:12:49] 2026-05-04 14:11:43,555 | INFO     | --------------------------------------------------
[2026-05-04 16:12:49] 2026-05-04 14:11:43,555 | INFO     | 
[2026-05-04 16:12:49] 2026-05-04 14:11:43,555 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2026-05-04 16:12:49] 2026-05-04 14:11:44,020 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,020 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,020 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,020 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,021 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,021 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,021 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,021 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,021 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,021 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,021 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,021 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,021 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,021 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,022 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,022 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,022 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,022 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-04 16:12:49] 2026-05-04 14:11:44,022 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,022 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-04 16:12:49] 2026-05-04 14:11:44,022 | INFO     | job 7128314632 has completed (purged errors)
[2026-05-04 16:12:49] 2026-05-04 14:11:44,022 | INFO     | overall cleanup function is called
[2026-05-04 16:12:49] 2026-05-04 14:11:45,030 | INFO     | --- collectZombieJob: --- 10, [19695]
[2026-05-04 16:12:49] 2026-05-04 14:11:45,031 | INFO     | zombie collector waiting for pid 19695
[2026-05-04 16:12:49] 2026-05-04 14:11:45,031 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-04 16:12:49] 2026-05-04 14:11:45,031 | INFO     | collected zombie processes
[2026-05-04 16:12:49] 2026-05-04 14:11:45,031 | INFO     | will attempt to kill all subprocesses of pid=19695
[2026-05-04 16:12:49] 2026-05-04 14:11:45,084 | INFO     | process IDs to be killed: [19695] (in reverse order)
[2026-05-04 16:12:49] 2026-05-04 14:11:46,199 | WARNING  | found no corresponding commands to process id(s)
[2026-05-04 16:12:49] 2026-05-04 14:11:46,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-04 16:12:49] 2026-05-04 14:11:46,201 | INFO     | did not find any defunct processes belonging to 19695
[2026-05-04 16:12:49] 2026-05-04 14:11:46,203 | INFO     | did not find any defunct processes belonging to 19695
[2026-05-04 16:12:49] 2026-05-04 14:11:46,203 | INFO     | Ready for new job
[2026-05-04 16:12:49] 2026-05-04 14:11:46,205 | INFO     | ***************************************
[2026-05-04 16:12:49] 2026-05-04 14:11:46,205 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-04 16:12:49] 2026-05-04 14:11:46,205 | INFO     | ***************************************
[2026-05-04 16:12:49] 2026-05-04 14:11:46,205 | INFO     | 
[2026-05-04 16:12:49] 2026-05-04 14:11:46,206 | INFO     | pilot is running in a VM
[2026-05-04 16:12:49] 2026-05-04 14:11:46,206 | INFO     | architecture information:
[2026-05-04 16:12:49] 2026-05-04 14:11:46,216 | INFO     | executing command: cat /etc/os-release
[2026-05-04 16:12:49] 2026-05-04 14:11:46,499 | INFO     | cat /etc/os-release:
[2026-05-04 16:12:49] NAME="CentOS Linux"
[2026-05-04 16:12:49] VERSION="7 (Core)"
[2026-05-04 16:12:49] ID="centos"
[2026-05-04 16:12:49] ID_LIKE="rhel fedora"
[2026-05-04 16:12:49] VERSION_ID="7"
[2026-05-04 16:12:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-04 16:12:49] ANSI_COLOR="0;31"
[2026-05-04 16:12:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-04 16:12:49] HOME_URL="https://www.centos.org/"
[2026-05-04 16:12:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-04 16:12:49] 
[2026-05-04 16:12:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-04 16:12:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-04 16:12:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-04 16:12:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-04 16:12:49] 
[2026-05-04 16:12:49] 2026-05-04 14:11:46,499 | INFO     | ***************************************
[2026-05-04 16:12:49] 2026-05-04 14:11:47,003 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2026-05-04 16:12:49] 2026-05-04 14:11:47,214 | INFO     | sufficient remaining disk space (496260612096 B)
[2026-05-04 16:12:49] 2026-05-04 14:11:47,214 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-04 16:12:49] 2026-05-04 14:11:47,215 | INFO     | current server update state: UPDATING_FINAL
[2026-05-04 16:12:49] 2026-05-04 14:11:47,215 | INFO     | update_server=False
[2026-05-04 16:12:49] 2026-05-04 14:11:47,215 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-04 16:12:49] 2026-05-04 14:11:47,433 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-04 16:12:49] 2026-05-04 14:11:48,046 | INFO     | all payload control threads have been joined
[2026-05-04 16:12:49] 2026-05-04 14:11:48,149 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-04 16:12:49] 2026-05-04 14:11:48,150 | INFO     | aborting loop
[2026-05-04 16:12:49] 2026-05-04 14:11:48,203 | INFO     | all data control threads have been joined
[2026-05-04 16:12:49] 2026-05-04 14:11:48,221 | INFO     | [job] retrieve thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:48,259 | INFO     | [job] validate thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:48,505 | INFO     | all job control threads have been joined
[2026-05-04 16:12:49] 2026-05-04 14:11:48,521 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-04 16:12:49] 2026-05-04 14:11:48,536 | INFO     | [payload] failed_post thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:48,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-04 16:12:49] 2026-05-04 14:11:48,784 | INFO     | [payload] validate_pre thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:48,815 | INFO     | [job] create_data_payload thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:48,990 | INFO     | [payload] validate_post thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:49,053 | INFO     | [payload] control thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:49,156 | INFO     | [job] job monitor thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:49,210 | INFO     | [data] control thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:49,249 | INFO     | [data] copytool_in thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:49,512 | INFO     | [job] control thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:49,574 | INFO     | [job] queue monitor thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:49,593 | INFO     | [payload] execute_payloads thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:50,531 | INFO     | [data] copytool_out thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:51,442 | INFO     | [data] queue_monitor thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:11:58,039 | INFO     | job.realtimelogging is not enabled
[2026-05-04 16:12:49] 2026-05-04 14:11:59,046 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-04 16:12:49] 2026-05-04 14:12:16,849 | INFO     | PID=15211 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-04 16:12:49] 2026-05-04 14:12:16,849 | INFO     | .. there are 2 such processes running
[2026-05-04 16:12:49] 2026-05-04 14:12:16,856 | INFO     | found 0 job(s) in 20 queues
[2026-05-04 16:12:49] 2026-05-04 14:12:16,856 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-04 16:12:49] 2026-05-04 14:12:16,856 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-04 16:12:49] 2026-05-04 14:12:38,279 | INFO     | [monitor] cgroup control has ended
[2026-05-04 16:12:49] 2026-05-04 14:12:39,328 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139936751216448)>', '<ExcThread(monitor, started 139936292378368)>']
[2026-05-04 16:12:49] 2026-05-04 14:12:39,993 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-04 16:12:49] 2026-05-04 14:12:39,994 | INFO     | [monitor] control thread has ended
[2026-05-04 16:12:49] 2026-05-04 14:12:44,353 | INFO     | all workflow threads have been joined
[2026-05-04 16:12:49] 2026-05-04 14:12:44,354 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-04 16:12:49] 2026-05-04 14:12:44,354 | INFO     | traces error code: 0
[2026-05-04 16:12:49] 2026-05-04 14:12:44,354 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-04 16:12:49] 2026-05-04 14:12:44,904 [wrapper] ==== pilot stdout END ====
[2026-05-04 16:12:49] 2026-05-04 14:12:45,034 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-04 16:12:49] 2026-05-04 14:12:45,117 [wrapper] pilotpid: 15211
[2026-05-04 16:12:49] 2026-05-04 14:12:45,207 [wrapper] Pilot exit status: 0
[2026-05-04 16:12:49] 2026-05-04 14:12:45,630 [wrapper] pandaids: 7128314632
[2026-05-04 16:12:49] 2026-05-04 14:12:46,580 [wrapper] cleanup supervisor_pilot 26672 15212
[2026-05-04 16:12:49] 2026-05-04 14:12:46,664 [wrapper] Test setup, not cleaning
[2026-05-04 16:12:49] 2026-05-04 14:12:46,759 [wrapper] apfmon messages muted
[2026-05-04 16:12:49] 2026-05-04 14:12:46,857 [wrapper] ==== wrapper stdout END ====
[2026-05-04 16:12:49] 2026-05-04 14:12:46,914 [wrapper] ==== wrapper stderr END ====
[2026-05-04 16:12:49]  *** Error codes and diagnostics ***
[2026-05-04 16:12:49]     "exeErrorCode": 0,
[2026-05-04 16:12:49]     "pilotErrorCode": 0,
[2026-05-04 16:12:49]  *** Listing of results directory ***
[2026-05-04 16:12:49] total 415672
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc    683926 May  4 04:11 pilot3.tar.gz
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc      5631 May  4 04:34 queuedata.json
[2026-05-04 16:12:49] -rwx------. 1 boinc boinc     36322 May  4 04:36 runpilot2-wrapper.sh
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc       100 May  4 12:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-04 16:12:49] -rwxr-xr-x. 1 boinc boinc      7986 May  4 12:21 run_atlas
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc       105 May  4 12:21 job.xml
[2026-05-04 16:12:49] -rw-r--r--. 2 boinc boinc 245924088 May  4 12:21 EVNT.50010969._000072.pool.root.1
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc      6306 May  4 12:21 init_data.xml
[2026-05-04 16:12:49] -rw-r--r--. 2 boinc boinc     15667 May  4 12:21 start_atlas.sh
[2026-05-04 16:12:49] drwxrwx--x. 2 boinc boinc        68 May  4 12:21 shared
[2026-05-04 16:12:49] -rw-r--r--. 2 boinc boinc    697399 May  4 12:21 input.tar.gz
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc         0 May  4 12:21 boinc_lockfile
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc      2511 May  4 12:21 pandaJob.out
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc       415 May  4 12:28 workernode_map.json
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc   1002664 May  4 12:28 agis_schedconf.cvmfs.json
[2026-05-04 16:12:49] drwx------. 5 boinc boinc      4096 May  4 12:28 pilot3
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc 172332675 May  4 16:10 HITS.50010972._001805.pool.root.1
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc       488 May  4 16:10 boinc_task_state.xml
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc      1012 May  4 16:11 memory_monitor_summary.json
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc   1505918 May  4 16:11 agis_ddmendpoints.agis.ALL.json
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc    382280 May  4 16:11 log.50010972._001805.job.log.tgz.1
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc      6330 May  4 16:11 heartbeat_new.json
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc      6221 May  4 16:11 heartbeat.json
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc        95 May  4 16:12 pilot_heartbeat.json
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc      8192 May  4 16:12 boinc_mmap_file
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc        28 May  4 16:12 wrapper_checkpoint.txt
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc      4955 May  4 16:12 pilotlog.txt
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc   1250649 May  4 16:12 log.50010972._001805.job.log.1
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc       357 May  4 16:12 output.list
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc       410 May  4 16:12 runtime_log
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc   1648640 May  4 16:12 result.tar.gz
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc      8439 May  4 16:12 runtime_log.err
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc       655 May  4 16:12 0625066cb77d.diag
[2026-05-04 16:12:49] -rw-r--r--. 1 boinc boinc     20639 May  4 16:12 stderr.txt
[2026-05-04 16:12:49] HITS file was successfully produced:
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc 172332675 May  4 16:10 shared/HITS.pool.root.1
[2026-05-04 16:12:49]  *** Contents of shared directory: ***
[2026-05-04 16:12:49] total 410772
[2026-05-04 16:12:49] -rw-r--r--. 2 boinc boinc 245924088 May  4 12:21 ATLAS.root_0
[2026-05-04 16:12:49] -rw-r--r--. 2 boinc boinc     15667 May  4 12:21 start_atlas.sh
[2026-05-04 16:12:49] -rw-r--r--. 2 boinc boinc    697399 May  4 12:21 input.tar.gz
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc 172332675 May  4 16:10 HITS.pool.root.1
[2026-05-04 16:12:49] -rw-------. 1 boinc boinc   1648640 May  4 16:12 result.tar.gz
16:12:50 (11200): run_atlas exited; CPU time 49527.103808
16:12:50 (11200): called boinc_finish(0)

</stderr_txt>
]]>

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