Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:24:23 (29501): wrapper (7.7.26015): starting
00:24:23 (29501): wrapper: running run_atlas (--nthreads 8)
[2026-05-04 00:24:23] Arguments: --nthreads 8
[2026-05-04 00:24:23] Threads: 8
[2026-05-04 00:24:23] Checking for CVMFS
[2026-05-04 00:24:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-04 00:24:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-04 00:24:28] Running cvmfs_config stat atlas.cern.ch
[2026-05-04 00:24:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-04 00:24:29] 2.11.2.0 15381 26240 97848 159184 1 11 17539647 25165824 96 130560 0 10148001 99.930 6752850 9176 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-04 00:24:29] CVMFS is ok
[2026-05-04 00:24:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-04 00:24:29] Checking for apptainer binary...
[2026-05-04 00:24:29] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-04 00:24:29] Running /usr/bin/apptainer --version
[2026-05-04 00:24:29] apptainer version 1.3.2-1.el7
[2026-05-04 00:24:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-04 00:24:44] cg-vwn426.simple-grid.lan
[2026-05-04 00:24:44] apptainer works
[2026-05-04 00:24:44] Set ATHENA_PROC_NUMBER=8
[2026-05-04 00:24:44] Set ATHENA_CORE_NUMBER=8
[2026-05-04 00:24:44] Starting ATLAS job with PandaID=7128163161
[2026-05-04 00:24:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-04 04:05:24]  *** The last 200 lines of the pilot log: ***
[2026-05-04 04:05:24] 2026-05-04 02:04:19,111 | INFO     | log transfer has been attempted: DONE
[2026-05-04 04:05:24] 2026-05-04 02:04:19,111 | INFO     | job 7128163161 has finished - writing final server update
[2026-05-04 04:05:24] 2026-05-04 02:04:19,111 | INFO     | total number of processed events: 400 (read)
[2026-05-04 04:05:24] 2026-05-04 02:04:19,113 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-7128163161/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 04:05:24] 2026-05-04 02:04:19,114 | INFO     | extracted standard info from prmon json
[2026-05-04 04:05:24] 2026-05-04 02:04:19,114 | INFO     | extracted standard memory fields from prmon json
[2026-05-04 04:05:24] 2026-05-04 02:04:19,114 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-04 04:05:24] 2026-05-04 02:04:19,114 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-04 04:05:24] 2026-05-04 02:04:19,119 | INFO     | fitting pss+swap vs Time
[2026-05-04 04:05:24] 2026-05-04 02:04:19,119 | INFO     | sum of square deviations: 2593916542.0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,121 | INFO     | sum of deviations: 90687140779.00002
[2026-05-04 04:05:24] 2026-05-04 02:04:19,121 | INFO     | mean x (centered): 0.0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,121 | INFO     | mean y: 2423213.78817734
[2026-05-04 04:05:24] 2026-05-04 02:04:19,121 | INFO     | intersect: 2423213.78817734
[2026-05-04 04:05:24] 2026-05-04 02:04:19,122 | INFO     | chi2: 9.691340505225439
[2026-05-04 04:05:24] 2026-05-04 02:04:19,122 | INFO     | sum of square deviations: 2406926989.5
[2026-05-04 04:05:24] 2026-05-04 02:04:19,124 | INFO     | sum of deviations: 101782419982.0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,124 | INFO     | mean x (centered): 0.0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,124 | INFO     | mean y: 2432042.5454545454
[2026-05-04 04:05:24] 2026-05-04 02:04:19,124 | INFO     | intersect: 2432042.5454545454
[2026-05-04 04:05:24] 2026-05-04 02:04:19,124 | INFO     | chi2: 9.035472795060317
[2026-05-04 04:05:24] 2026-05-04 02:04:19,125 | INFO     | current chi2=9.035472795060317 (change=6.767564402586898 %)
[2026-05-04 04:05:24] 2026-05-04 02:04:19,125 | INFO     | right removable region: 197
[2026-05-04 04:05:24] 2026-05-04 02:04:19,125 | INFO     | sum of square deviations: 2406926989.5
[2026-05-04 04:05:24] 2026-05-04 02:04:19,130 | INFO     | sum of deviations: 17663495316.999992
[2026-05-04 04:05:24] 2026-05-04 02:04:19,130 | INFO     | mean x (centered): 0.0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,130 | INFO     | mean y: 2482751.8080808083
[2026-05-04 04:05:24] 2026-05-04 02:04:19,130 | INFO     | intersect: 2482751.8080808083
[2026-05-04 04:05:24] 2026-05-04 02:04:19,130 | INFO     | chi2: 4.00935774781466
[2026-05-04 04:05:24] 2026-05-04 02:04:19,131 | INFO     | current chi2=4.00935774781466 (change=58.6294822098876 %)
[2026-05-04 04:05:24] 2026-05-04 02:04:19,131 | INFO     | sum of square deviations: 2229146912.0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,132 | INFO     | sum of deviations: -37062605578.0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,132 | INFO     | mean x (centered): 0.0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,133 | INFO     | mean y: 2529617.487046632
[2026-05-04 04:05:24] 2026-05-04 02:04:19,133 | INFO     | intersect: 2529617.487046632
[2026-05-04 04:05:24] 2026-05-04 02:04:19,133 | INFO     | chi2: 1.080911277747842
[2026-05-04 04:05:24] 2026-05-04 02:04:19,133 | INFO     | current chi2=1.080911277747842 (change=73.04028860140996 %)
[2026-05-04 04:05:24] 2026-05-04 02:04:19,134 | INFO     | sum of square deviations: 2060343747.0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,135 | INFO     | sum of deviations: -44235663471.0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,135 | INFO     | mean x (centered): 0.0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,135 | INFO     | mean y: 2536002.8829787234
[2026-05-04 04:05:24] 2026-05-04 02:04:19,136 | INFO     | intersect: 2536002.8829787234
[2026-05-04 04:05:24] 2026-05-04 02:04:19,136 | INFO     | chi2: 0.9536189439967276
[2026-05-04 04:05:24] 2026-05-04 02:04:19,136 | INFO     | current chi2=0.9536189439967276 (change=11.776390567072008 %)
[2026-05-04 04:05:24] 2026-05-04 02:04:19,136 | INFO     | left removable region: 15
[2026-05-04 04:05:24] 2026-05-04 02:04:19,137 | INFO     | sum of square deviations: 1869302025.5
[2026-05-04 04:05:24] 2026-05-04 02:04:19,138 | INFO     | sum of deviations: -30541161152.999996
[2026-05-04 04:05:24] 2026-05-04 02:04:19,138 | INFO     | mean x (centered): 0.0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,138 | INFO     | mean y: 2548799.714285714
[2026-05-04 04:05:24] 2026-05-04 02:04:19,138 | INFO     | intersect: 2548799.714285714
[2026-05-04 04:05:24] 2026-05-04 02:04:19,139 | INFO     | chi2: 0.15890807778663962
[2026-05-04 04:05:24] 2026-05-04 02:04:19,139 | INFO     | current memory leak: -16.34 B/s (using 182 data points, chi2=0.16)
[2026-05-04 04:05:24] 2026-05-04 02:04:19,140 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-05-04 04:05:24] 2026-05-04 02:04:19,140 | INFO     | ..............................
[2026-05-04 04:05:24] 2026-05-04 02:04:19,140 | INFO     | . Timing measurements:
[2026-05-04 04:05:24] 2026-05-04 02:04:19,140 | INFO     | . get job = 0 s
[2026-05-04 04:05:24] 2026-05-04 02:04:19,140 | INFO     | . initial setup = 119 s
[2026-05-04 04:05:24] 2026-05-04 02:04:19,140 | INFO     | . payload setup = 244 s
[2026-05-04 04:05:24] 2026-05-04 02:04:19,140 | INFO     | . stage-in = 0 s
[2026-05-04 04:05:24] 2026-05-04 02:04:19,143 | INFO     | . payload execution = 12477 s
[2026-05-04 04:05:24] 2026-05-04 02:04:19,144 | INFO     | . stage-out = 3 s
[2026-05-04 04:05:24] 2026-05-04 02:04:19,144 | INFO     | . log creation = 1 s
[2026-05-04 04:05:24] 2026-05-04 02:04:19,144 | INFO     | ..............................
[2026-05-04 04:05:24] 2026-05-04 02:04:19,283 | INFO     | 
[2026-05-04 04:05:24] 2026-05-04 02:04:19,284 | INFO     | job summary report
[2026-05-04 04:05:24] 2026-05-04 02:04:19,284 | INFO     | --------------------------------------------------
[2026-05-04 04:05:24] 2026-05-04 02:04:19,284 | INFO     | PanDA job id: 7128163161
[2026-05-04 04:05:24] 2026-05-04 02:04:19,284 | INFO     | task id: 50011096
[2026-05-04 04:05:24] 2026-05-04 02:04:19,284 | INFO     | errors: (none)
[2026-05-04 04:05:24] 2026-05-04 02:04:19,284 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-04 04:05:24] 2026-05-04 02:04:19,285 | INFO     | pilot state: finished 
[2026-05-04 04:05:24] 2026-05-04 02:04:19,285 | INFO     | transexitcode: 0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,285 | INFO     | exeerrorcode: 0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,285 | INFO     | exeerrordiag: 
[2026-05-04 04:05:24] 2026-05-04 02:04:19,285 | INFO     | exitcode: 0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,285 | INFO     | exitmsg: OK
[2026-05-04 04:05:24] 2026-05-04 02:04:19,285 | INFO     | cpuconsumptiontime: 46114 s
[2026-05-04 04:05:24] 2026-05-04 02:04:19,285 | INFO     | nevents: 400
[2026-05-04 04:05:24] 2026-05-04 02:04:19,285 | INFO     | neventsw: 0
[2026-05-04 04:05:24] 2026-05-04 02:04:19,286 | INFO     | pid: 5612
[2026-05-04 04:05:24] 2026-05-04 02:04:19,286 | INFO     | pgrp: 5612
[2026-05-04 04:05:24] 2026-05-04 02:04:19,286 | INFO     | corecount: 8
[2026-05-04 04:05:24] 2026-05-04 02:04:19,286 | INFO     | event service: False
[2026-05-04 04:05:24] 2026-05-04 02:04:19,286 | INFO     | sizes: {0: 2274558, 1: 2275243, 2: 2277072, 13: 2277072, 12726: 2307031, 12730: 2316029, 12733: 2316213, 12735: 2316407}
[2026-05-04 04:05:24] 2026-05-04 02:04:19,286 | INFO     | --------------------------------------------------
[2026-05-04 04:05:24] 2026-05-04 02:04:19,286 | INFO     | 
[2026-05-04 04:05:24] 2026-05-04 02:04:19,286 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2026-05-04 04:05:24] 2026-05-04 02:04:19,648 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,649 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,649 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,649 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,649 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,650 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,650 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,650 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,650 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,650 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,650 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,651 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,651 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-04 04:05:24] 2026-05-04 02:04:19,651 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,651 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-04 04:05:24] 2026-05-04 02:04:19,651 | INFO     | job 7128163161 has completed (purged errors)
[2026-05-04 04:05:24] 2026-05-04 02:04:19,651 | INFO     | overall cleanup function is called
[2026-05-04 04:05:24] 2026-05-04 02:04:20,660 | INFO     | --- collectZombieJob: --- 10, [5612]
[2026-05-04 04:05:24] 2026-05-04 02:04:20,660 | INFO     | zombie collector waiting for pid 5612
[2026-05-04 04:05:24] 2026-05-04 02:04:20,660 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-04 04:05:24] 2026-05-04 02:04:20,660 | INFO     | collected zombie processes
[2026-05-04 04:05:24] 2026-05-04 02:04:20,660 | INFO     | will attempt to kill all subprocesses of pid=5612
[2026-05-04 04:05:24] 2026-05-04 02:04:20,723 | INFO     | process IDs to be killed: [5612] (in reverse order)
[2026-05-04 04:05:24] 2026-05-04 02:04:21,550 | WARNING  | found no corresponding commands to process id(s)
[2026-05-04 04:05:24] 2026-05-04 02:04:21,551 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-04 04:05:24] 2026-05-04 02:04:21,553 | INFO     | did not find any defunct processes belonging to 5612
[2026-05-04 04:05:24] 2026-05-04 02:04:21,554 | INFO     | did not find any defunct processes belonging to 5612
[2026-05-04 04:05:24] 2026-05-04 02:04:21,555 | INFO     | Ready for new job
[2026-05-04 04:05:24] 2026-05-04 02:04:21,556 | INFO     | ***************************************
[2026-05-04 04:05:24] 2026-05-04 02:04:21,557 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-04 04:05:24] 2026-05-04 02:04:21,557 | INFO     | ***************************************
[2026-05-04 04:05:24] 2026-05-04 02:04:21,557 | INFO     | 
[2026-05-04 04:05:24] 2026-05-04 02:04:21,557 | INFO     | pilot is running in a VM
[2026-05-04 04:05:24] 2026-05-04 02:04:21,558 | INFO     | architecture information:
[2026-05-04 04:05:24] 2026-05-04 02:04:21,558 | INFO     | executing command: cat /etc/os-release
[2026-05-04 04:05:24] 2026-05-04 02:04:21,783 | INFO     | cat /etc/os-release:
[2026-05-04 04:05:24] NAME="CentOS Linux"
[2026-05-04 04:05:24] VERSION="7 (Core)"
[2026-05-04 04:05:24] ID="centos"
[2026-05-04 04:05:24] ID_LIKE="rhel fedora"
[2026-05-04 04:05:24] VERSION_ID="7"
[2026-05-04 04:05:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-04 04:05:24] ANSI_COLOR="0;31"
[2026-05-04 04:05:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-04 04:05:24] HOME_URL="https://www.centos.org/"
[2026-05-04 04:05:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-04 04:05:24] 
[2026-05-04 04:05:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-04 04:05:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-04 04:05:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-04 04:05:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-04 04:05:24] 
[2026-05-04 04:05:24] 2026-05-04 02:04:21,784 | INFO     | ***************************************
[2026-05-04 04:05:24] 2026-05-04 02:04:22,288 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2026-05-04 04:05:24] 2026-05-04 02:04:22,544 | INFO     | sufficient remaining disk space (497659412480 B)
[2026-05-04 04:05:24] 2026-05-04 02:04:22,544 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-04 04:05:24] 2026-05-04 02:04:22,544 | INFO     | current server update state: UPDATING_FINAL
[2026-05-04 04:05:24] 2026-05-04 02:04:22,544 | INFO     | update_server=False
[2026-05-04 04:05:24] 2026-05-04 02:04:22,545 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-04 04:05:24] 2026-05-04 02:04:22,546 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-04 04:05:24] 2026-05-04 02:04:22,907 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-04 04:05:24] 2026-05-04 02:04:22,908 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-04 04:05:24] 2026-05-04 02:04:22,908 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-04 04:05:24] 2026-05-04 02:04:22,908 | INFO     | will abort loop
[2026-05-04 04:05:24] 2026-05-04 02:04:22,936 | INFO     | all payload control threads have been joined
[2026-05-04 04:05:24] 2026-05-04 02:04:22,982 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-04 04:05:24] 2026-05-04 02:04:23,107 | INFO     | all job control threads have been joined
[2026-05-04 04:05:24] 2026-05-04 02:04:23,551 | INFO     | [job] retrieve thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:23,596 | INFO     | all data control threads have been joined
[2026-05-04 04:05:24] 2026-05-04 02:04:23,763 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:23,914 | INFO     | [job] job monitor thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:23,943 | INFO     | [payload] control thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:23,976 | INFO     | [payload] validate_post thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:24,114 | INFO     | [job] control thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:24,303 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-04 04:05:24] 2026-05-04 02:04:24,354 | INFO     | [data] copytool_in thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:24,489 | INFO     | [payload] execute_payloads thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:24,553 | INFO     | [data] copytool_out thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:24,603 | INFO     | [data] control thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:24,802 | INFO     | [payload] validate_pre thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:24,866 | INFO     | [job] validate thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:24,958 | INFO     | [job] create_data_payload thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:24,979 | INFO     | [payload] failed_post thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:25,309 | INFO     | [job] queue monitor thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:26,994 | INFO     | [data] queue_monitor thread has finished
[2026-05-04 04:05:24] 2026-05-04 02:04:52,503 | INFO     | PID=1145 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-05-04 04:05:24] 2026-05-04 02:04:52,503 | INFO     | .. there are 2 such processes running
[2026-05-04 04:05:24] 2026-05-04 02:04:52,503 | INFO     | found 0 job(s) in 20 queues
[2026-05-04 04:05:24] 2026-05-04 02:04:52,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-04 04:05:24] 2026-05-04 02:04:52,504 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-04 04:05:24] 2026-05-04 02:05:12,353 | INFO     | [monitor] cgroup control has ended
[2026-05-04 04:05:24] 2026-05-04 02:05:13,935 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140659913131840)>', '<ExcThread(monitor, started 140659457496832)>']
[2026-05-04 04:05:24] 2026-05-04 02:05:14,635 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-04 04:05:24] 2026-05-04 02:05:14,636 | INFO     | [monitor] control thread has ended
[2026-05-04 04:05:24] 2026-05-04 02:05:18,960 | INFO     | all workflow threads have been joined
[2026-05-04 04:05:24] 2026-05-04 02:05:18,961 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-04 04:05:24] 2026-05-04 02:05:18,961 | INFO     | traces error code: 0
[2026-05-04 04:05:24] 2026-05-04 02:05:18,961 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-04 04:05:24] 2026-05-04 02:05:19,507 [wrapper] ==== pilot stdout END ====
[2026-05-04 04:05:24] 2026-05-04 02:05:19,607 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-04 04:05:24] 2026-05-04 02:05:19,696 [wrapper] pilotpid: 1145
[2026-05-04 04:05:24] 2026-05-04 02:05:19,803 [wrapper] Pilot exit status: 0
[2026-05-04 04:05:24] 2026-05-04 02:05:20,238 [wrapper] pandaids: 7128163161
[2026-05-04 04:05:24] 2026-05-04 02:05:21,436 [wrapper] cleanup supervisor_pilot 12412 1146
[2026-05-04 04:05:24] 2026-05-04 02:05:21,572 [wrapper] Test setup, not cleaning
[2026-05-04 04:05:24] 2026-05-04 02:05:21,679 [wrapper] apfmon messages muted
[2026-05-04 04:05:24] 2026-05-04 02:05:21,820 [wrapper] ==== wrapper stdout END ====
[2026-05-04 04:05:24] 2026-05-04 02:05:21,953 [wrapper] ==== wrapper stderr END ====
[2026-05-04 04:05:24]  *** Error codes and diagnostics ***
[2026-05-04 04:05:24]     "exeErrorCode": 0,
[2026-05-04 04:05:24]     "pilotErrorCode": 0,
[2026-05-04 04:05:24]  *** Listing of results directory ***
[2026-05-04 04:05:24] total 409600
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc    683926 May  4 00:04 pilot3.tar.gz
[2026-05-04 04:05:24] -rwx------. 1 boinc boinc     36322 May  4 00:23 runpilot2-wrapper.sh
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc      5631 May  4 00:23 queuedata.json
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc       100 May  4 00:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-04 04:05:24] -rwxr-xr-x. 1 boinc boinc      7986 May  4 00:24 run_atlas
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc       105 May  4 00:24 job.xml
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc      6306 May  4 00:24 init_data.xml
[2026-05-04 04:05:24] -rw-r--r--. 2 boinc boinc 247544695 May  4 00:24 EVNT.50011094._000016.pool.root.1
[2026-05-04 04:05:24] -rw-r--r--. 2 boinc boinc     15667 May  4 00:24 start_atlas.sh
[2026-05-04 04:05:24] drwxrwx--x. 2 boinc boinc        68 May  4 00:24 shared
[2026-05-04 04:05:24] -rw-r--r--. 2 boinc boinc    697397 May  4 00:24 input.tar.gz
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc         0 May  4 00:24 boinc_lockfile
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc      2512 May  4 00:24 pandaJob.out
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc       415 May  4 00:31 workernode_map.json
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc   1003017 May  4 00:31 agis_schedconf.cvmfs.json
[2026-05-04 04:05:24] drwx------. 5 boinc boinc      4096 May  4 00:31 pilot3
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc 164609267 May  4 04:02 HITS.50011096._001146.pool.root.1
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc       489 May  4 04:03 boinc_task_state.xml
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc      1025 May  4 04:04 memory_monitor_summary.json
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc        95 May  4 04:04 pilot_heartbeat.json
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc   1508687 May  4 04:04 agis_ddmendpoints.agis.ALL.json
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc    385418 May  4 04:04 log.50011096._001146.job.log.tgz.1
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc      6332 May  4 04:04 heartbeat_new.json
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc      6223 May  4 04:04 heartbeat.json
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc      8192 May  4 04:05 boinc_mmap_file
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc        28 May  4 04:05 wrapper_checkpoint.txt
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc      5068 May  4 04:05 pilotlog.txt
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc   1191162 May  4 04:05 log.50011096._001146.job.log.1
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc       357 May  4 04:05 output.list
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc       410 May  4 04:05 runtime_log
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc   1597440 May  4 04:05 result.tar.gz
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc      8439 May  4 04:05 runtime_log.err
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc       656 May  4 04:05 caf570fe7c79.diag
[2026-05-04 04:05:24] -rw-r--r--. 1 boinc boinc     20611 May  4 04:05 stderr.txt
[2026-05-04 04:05:24] HITS file was successfully produced:
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc 164609267 May  4 04:02 shared/HITS.pool.root.1
[2026-05-04 04:05:24]  *** Contents of shared directory: ***
[2026-05-04 04:05:24] total 404756
[2026-05-04 04:05:24] -rw-r--r--. 2 boinc boinc 247544695 May  4 00:24 ATLAS.root_0
[2026-05-04 04:05:24] -rw-r--r--. 2 boinc boinc     15667 May  4 00:24 start_atlas.sh
[2026-05-04 04:05:24] -rw-r--r--. 2 boinc boinc    697397 May  4 00:24 input.tar.gz
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc 164609267 May  4 04:02 HITS.pool.root.1
[2026-05-04 04:05:24] -rw-------. 1 boinc boinc   1597440 May  4 04:05 result.tar.gz
04:05:26 (29501): run_atlas exited; CPU time 46225.037361
04:05:26 (29501): called boinc_finish(0)

</stderr_txt>
]]>

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