Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:58:44 (2484982): wrapper (7.7.26015): starting
04:58:44 (2484982): wrapper: running run_atlas (--nthreads 4)
[2026-05-04 04:58:44] Arguments: --nthreads 4
[2026-05-04 04:58:44] Threads: 4
[2026-05-04 04:58:44] Checking for CVMFS
[2026-05-04 04:58:44] No cvmfs_config command found, will try listing directly
[2026-05-04 04:58:44] CVMFS is ok
[2026-05-04 04:58:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-04 04:58:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-04 04:58:44] Further information can be found at the LHC@home message board.
[2026-05-04 04:58:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-04 04:58:44] Checking for apptainer binary...
[2026-05-04 04:58:44] which: no apptainer in ((null))
[2026-05-04 04:58:44] apptainer is not installed, using version from CVMFS
[2026-05-04 04:58:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-04 04:58:44] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot28/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2026-05-04 04:58:44] apptainer works
[2026-05-04 04:58:44] Set ATHENA_PROC_NUMBER=4
[2026-05-04 04:58:44] Set ATHENA_CORE_NUMBER=4
[2026-05-04 04:58:44] Starting ATLAS job with PandaID=7127811347
[2026-05-04 04:58:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot28/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-04 07:41:26]  *** The last 200 lines of the pilot log: ***
[2026-05-04 07:41:26] 2026-05-04 05:40:44,902 | INFO     | reading metadata from: /var/lib/boinc/var/slot28/slots/2/PanDA_Pilot-7127811347/jobReport.json
[2026-05-04 07:41:26] 2026-05-04 05:40:44,905 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot28/slots/2/workernode_map.json
[2026-05-04 07:41:26] 2026-05-04 05:40:44,905 | INFO     | this job has now completed (state=finished)
[2026-05-04 07:41:26] 2026-05-04 05:40:44,905 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-04 07:41:26] 2026-05-04 05:40:44,905 | INFO     | log transfer has been attempted: DONE
[2026-05-04 07:41:26] 2026-05-04 05:40:44,905 | INFO     | job 7127811347 has finished - writing final server update
[2026-05-04 07:41:26] 2026-05-04 05:40:44,906 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1339057/.job.ad'
[2026-05-04 07:41:26] 2026-05-04 05:40:44,906 | INFO     | total number of processed events: 400 (read)
[2026-05-04 07:41:26] 2026-05-04 05:40:44,919 | INFO     | using path: /var/lib/boinc/var/slot28/slots/2/PanDA_Pilot-7127811347/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 07:41:26] 2026-05-04 05:40:44,919 | INFO     | extracted standard info from prmon json
[2026-05-04 07:41:26] 2026-05-04 05:40:44,920 | INFO     | extracted standard memory fields from prmon json
[2026-05-04 07:41:26] 2026-05-04 05:40:44,920 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-04 07:41:26] 2026-05-04 05:40:44,920 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-04 07:41:26] 2026-05-04 05:40:44,923 | INFO     | fitting pss+swap vs Time
[2026-05-04 07:41:26] 2026-05-04 05:40:44,924 | INFO     | sum of square deviations: 1246386160.0
[2026-05-04 07:41:26] 2026-05-04 05:40:44,925 | INFO     | sum of deviations: 19314987784.000004
[2026-05-04 07:41:26] 2026-05-04 05:40:44,925 | INFO     | mean x (centered): 0.0
[2026-05-04 07:41:26] 2026-05-04 05:40:44,925 | INFO     | mean y: 2310965.2955974843
[2026-05-04 07:41:26] 2026-05-04 05:40:44,925 | INFO     | intersect: 2310965.2955974843
[2026-05-04 07:41:26] 2026-05-04 05:40:44,925 | INFO     | chi2: 1.4094833363590953
[2026-05-04 07:41:26] 2026-05-04 05:40:44,926 | INFO     | sum of square deviations: 1132458442.5
[2026-05-04 07:41:26] 2026-05-04 05:40:44,927 | INFO     | sum of deviations: 18521496733.999996
[2026-05-04 07:41:26] 2026-05-04 05:40:44,927 | INFO     | mean x (centered): 0.0
[2026-05-04 07:41:26] 2026-05-04 05:40:44,927 | INFO     | mean y: 2309902.7922077924
[2026-05-04 07:41:26] 2026-05-04 05:40:44,927 | INFO     | intersect: 2309902.7922077924
[2026-05-04 07:41:26] 2026-05-04 05:40:44,927 | INFO     | chi2: 1.4108845526374216
[2026-05-04 07:41:26] 2026-05-04 05:40:44,927 | INFO     | current chi2=1.4108845526374216 (change=-0.09941346890598185 %)
[2026-05-04 07:41:26] 2026-05-04 05:40:44,927 | INFO     | right removable region: 153
[2026-05-04 07:41:26] 2026-05-04 05:40:44,928 | INFO     | sum of square deviations: 1132458442.5
[2026-05-04 07:41:26] 2026-05-04 05:40:44,928 | INFO     | sum of deviations: -2260249744.4999995
[2026-05-04 07:41:26] 2026-05-04 05:40:44,929 | INFO     | mean x (centered): 0.0
[2026-05-04 07:41:26] 2026-05-04 05:40:44,929 | INFO     | mean y: 2339411.7077922076
[2026-05-04 07:41:26] 2026-05-04 05:40:44,929 | INFO     | intersect: 2339411.7077922076
[2026-05-04 07:41:26] 2026-05-04 05:40:44,929 | INFO     | chi2: 0.012866076864174727
[2026-05-04 07:41:26] 2026-05-04 05:40:44,929 | INFO     | current chi2=0.012866076864174727 (change=99.0871777954176 %)
[2026-05-04 07:41:26] 2026-05-04 05:40:44,929 | INFO     | sum of square deviations: 1025693650.0
[2026-05-04 07:41:26] 2026-05-04 05:40:44,930 | INFO     | sum of deviations: -1245180861.0000002
[2026-05-04 07:41:26] 2026-05-04 05:40:44,930 | INFO     | mean x (centered): 0.0
[2026-05-04 07:41:26] 2026-05-04 05:40:44,931 | INFO     | mean y: 2337951.536912752
[2026-05-04 07:41:26] 2026-05-04 05:40:44,931 | INFO     | intersect: 2337951.536912752
[2026-05-04 07:41:26] 2026-05-04 05:40:44,931 | INFO     | chi2: 0.011417895019609154
[2026-05-04 07:41:26] 2026-05-04 05:40:44,931 | INFO     | current chi2=0.011417895019609154 (change=11.255815271848716 %)
[2026-05-04 07:41:26] 2026-05-04 05:40:44,931 | INFO     | left removable region: 10
[2026-05-04 07:41:26] 2026-05-04 05:40:44,931 | INFO     | sum of square deviations: 906703512.0
[2026-05-04 07:41:26] 2026-05-04 05:40:44,932 | INFO     | sum of deviations: -1401474085.0000007
[2026-05-04 07:41:26] 2026-05-04 05:40:44,932 | INFO     | mean x (centered): 0.0
[2026-05-04 07:41:26] 2026-05-04 05:40:44,932 | INFO     | mean y: 2337711.027972028
[2026-05-04 07:41:26] 2026-05-04 05:40:44,933 | INFO     | intersect: 2337711.027972028
[2026-05-04 07:41:26] 2026-05-04 05:40:44,933 | INFO     | chi2: 0.011253561822434265
[2026-05-04 07:41:26] 2026-05-04 05:40:44,933 | INFO     | current memory leak: -1.55 B/s (using 143 data points, chi2=0.01)
[2026-05-04 07:41:26] 2026-05-04 05:40:44,933 | INFO     | could have reported an average CPU frequency of 2518 MHz (9 samples)
[2026-05-04 07:41:26] 2026-05-04 05:40:44,934 | INFO     | ..............................
[2026-05-04 07:41:26] 2026-05-04 05:40:44,934 | INFO     | . Timing measurements:
[2026-05-04 07:41:26] 2026-05-04 05:40:44,934 | INFO     | . get job = 0 s
[2026-05-04 07:41:26] 2026-05-04 05:40:44,934 | INFO     | . initial setup = 6 s
[2026-05-04 07:41:26] 2026-05-04 05:40:44,934 | INFO     | . payload setup = 10 s
[2026-05-04 07:41:26] 2026-05-04 05:40:44,934 | INFO     | . stage-in = 0 s
[2026-05-04 07:41:26] 2026-05-04 05:40:44,934 | INFO     | . payload execution = 9672 s
[2026-05-04 07:41:26] 2026-05-04 05:40:44,934 | INFO     | . stage-out = 0 s
[2026-05-04 07:41:26] 2026-05-04 05:40:44,934 | INFO     | . log creation = 0 s
[2026-05-04 07:41:26] 2026-05-04 05:40:44,934 | INFO     | ..............................
[2026-05-04 07:41:26] 2026-05-04 05:40:45,032 | INFO     | 
[2026-05-04 07:41:26] 2026-05-04 05:40:45,032 | INFO     | job summary report
[2026-05-04 07:41:26] 2026-05-04 05:40:45,032 | INFO     | --------------------------------------------------
[2026-05-04 07:41:26] 2026-05-04 05:40:45,032 | INFO     | PanDA job id: 7127811347
[2026-05-04 07:41:26] 2026-05-04 05:40:45,032 | INFO     | task id: 50010719
[2026-05-04 07:41:26] 2026-05-04 05:40:45,032 | INFO     | errors: (none)
[2026-05-04 07:41:26] 2026-05-04 05:40:45,032 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-04 07:41:26] 2026-05-04 05:40:45,032 | INFO     | pilot state: finished 
[2026-05-04 07:41:26] 2026-05-04 05:40:45,032 | INFO     | transexitcode: 0
[2026-05-04 07:41:26] 2026-05-04 05:40:45,032 | INFO     | exeerrorcode: 0
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | exeerrordiag: 
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | exitcode: 0
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | exitmsg: OK
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | cpuconsumptiontime: 37136 s
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | nevents: 400
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | neventsw: 0
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | pid: 2493958
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | pgrp: 2493958
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | corecount: 4
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | event service: False
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | sizes: {0: 2275281, 1: 2277110, 12: 2277110, 9686: 2305508, 9687: 2314584, 9690: 2314786}
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | --------------------------------------------------
[2026-05-04 07:41:26] 2026-05-04 05:40:45,033 | INFO     | 
[2026-05-04 07:41:26] 2026-05-04 05:40:45,034 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot28/slots/2
[2026-05-04 07:41:26] 2026-05-04 05:40:45,057 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,057 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,058 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,058 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,058 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,058 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,058 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,058 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,058 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,058 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,058 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,058 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,058 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,059 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,059 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,059 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,059 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,059 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-04 07:41:26] 2026-05-04 05:40:45,059 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,059 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-04 07:41:26] 2026-05-04 05:40:45,059 | INFO     | job 7127811347 has completed (purged errors)
[2026-05-04 07:41:26] 2026-05-04 05:40:45,059 | INFO     | overall cleanup function is called
[2026-05-04 07:41:26] 2026-05-04 05:40:45,375 | WARNING  | process 2493958 can no longer be monitored (due to stat problems) - aborting
[2026-05-04 07:41:26] 2026-05-04 05:40:45,667 | INFO     | using path: /var/lib/boinc/var/slot28/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 07:41:26] 2026-05-04 05:40:45,962 | INFO     | number of running child processes to parent process 2493958: 1
[2026-05-04 07:41:26] 2026-05-04 05:40:45,963 | INFO     | maximum number of monitored processes: 6
[2026-05-04 07:41:26] 2026-05-04 05:40:45,963 | INFO     | aborting job monitoring since job object (job id=7127811347) has expired
[2026-05-04 07:41:26] 2026-05-04 05:40:46,068 | INFO     | --- collectZombieJob: --- 10, [2493958]
[2026-05-04 07:41:26] 2026-05-04 05:40:46,068 | INFO     | zombie collector waiting for pid 2493958
[2026-05-04 07:41:26] 2026-05-04 05:40:46,068 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-04 07:41:26] 2026-05-04 05:40:46,068 | INFO     | collected zombie processes
[2026-05-04 07:41:26] 2026-05-04 05:40:46,069 | INFO     | will attempt to kill all subprocesses of pid=2493958
[2026-05-04 07:41:26] 2026-05-04 05:40:46,370 | INFO     | process IDs to be killed: [2493958] (in reverse order)
[2026-05-04 07:41:26] 2026-05-04 05:40:46,499 | WARNING  | found no corresponding commands to process id(s)
[2026-05-04 07:41:26] 2026-05-04 05:40:46,499 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-04 07:41:26] 2026-05-04 05:40:46,511 | INFO     | did not find any defunct processes belonging to 2493958
[2026-05-04 07:41:26] 2026-05-04 05:40:46,523 | INFO     | did not find any defunct processes belonging to 2493958
[2026-05-04 07:41:26] 2026-05-04 05:40:46,523 | INFO     | Ready for new job
[2026-05-04 07:41:26] 2026-05-04 05:40:46,525 | INFO     | ***************************************
[2026-05-04 07:41:26] 2026-05-04 05:40:46,525 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-04 07:41:26] 2026-05-04 05:40:46,525 | INFO     | ***************************************
[2026-05-04 07:41:26] 2026-05-04 05:40:46,525 | INFO     | 
[2026-05-04 07:41:26] 2026-05-04 05:40:46,529 | INFO     | architecture information:
[2026-05-04 07:41:26] 2026-05-04 05:40:46,530 | INFO     | executing command: cat /etc/os-release
[2026-05-04 07:41:26] 2026-05-04 05:40:46,549 | INFO     | cat /etc/os-release:
[2026-05-04 07:41:26] NAME="CentOS Linux"
[2026-05-04 07:41:26] VERSION="7 (Core)"
[2026-05-04 07:41:26] ID="centos"
[2026-05-04 07:41:26] ID_LIKE="rhel fedora"
[2026-05-04 07:41:26] VERSION_ID="7"
[2026-05-04 07:41:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-04 07:41:26] ANSI_COLOR="0;31"
[2026-05-04 07:41:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-04 07:41:26] HOME_URL="https://www.centos.org/"
[2026-05-04 07:41:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-04 07:41:26] 
[2026-05-04 07:41:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-04 07:41:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-04 07:41:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-04 07:41:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-04 07:41:26] 
[2026-05-04 07:41:26] 2026-05-04 05:40:46,549 | INFO     | ***************************************
[2026-05-04 07:41:26] 2026-05-04 05:40:47,052 | INFO     | executing command: df -mP /var/lib/boinc/var/slot28/slots/2
[2026-05-04 07:41:26] 2026-05-04 05:40:47,070 | INFO     | sufficient remaining disk space (49379540992 B)
[2026-05-04 07:41:26] 2026-05-04 05:40:47,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-04 07:41:26] 2026-05-04 05:40:47,070 | INFO     | current server update state: UPDATING_FINAL
[2026-05-04 07:41:26] 2026-05-04 05:40:47,070 | INFO     | update_server=False
[2026-05-04 07:41:26] 2026-05-04 05:40:47,071 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-04 07:41:26] 2026-05-04 05:40:47,071 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-04 07:41:26] 2026-05-04 05:40:47,071 | INFO     | aborting loop
[2026-05-04 07:41:26] 2026-05-04 05:40:47,914 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-04 07:41:26] 2026-05-04 05:40:47,962 | INFO     | all data control threads have been joined
[2026-05-04 07:41:26] 2026-05-04 05:40:48,075 | INFO     | [job] retrieve thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:48,076 | INFO     | [job] job monitor thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:48,090 | INFO     | all payload control threads have been joined
[2026-05-04 07:41:26] 2026-05-04 05:40:48,138 | INFO     | [job] validate thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:48,246 | INFO     | [payload] failed_post thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:48,294 | INFO     | all job control threads have been joined
[2026-05-04 07:41:26] 2026-05-04 05:40:48,380 | INFO     | [payload] execute_payloads thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:48,491 | INFO     | [job] create_data_payload thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:48,513 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-04 07:41:26] 2026-05-04 05:40:48,581 | INFO     | [payload] validate_pre thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:48,845 | INFO     | [data] copytool_in thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:48,878 | INFO     | [payload] validate_post thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:48,967 | INFO     | [data] control thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:49,095 | INFO     | [payload] control thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:49,300 | INFO     | [job] control thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:49,320 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:49,920 | INFO     | [data] copytool_out thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:50,041 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-04 07:41:26] 2026-05-04 05:40:51,044 | INFO     | [job] queue monitor thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:40:52,518 | INFO     | [data] queue_monitor thread has finished
[2026-05-04 07:41:26] 2026-05-04 05:41:16,790 | INFO     | PID=2489092 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-04 07:41:26] 2026-05-04 05:41:16,790 | INFO     | .. there are 12 such processes running
[2026-05-04 07:41:26] 2026-05-04 05:41:16,790 | INFO     | found 0 job(s) in 20 queues
[2026-05-04 07:41:26] 2026-05-04 05:41:16,790 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-04 07:41:26] 2026-05-04 05:41:16,790 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-04 07:41:26] 2026-05-04 05:41:18,573 | INFO     | [monitor] cgroup control has ended
[2026-05-04 07:41:26] 2026-05-04 05:41:20,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22994419410752)>', '<ExcThread(monitor, started 22994114049792)>']
[2026-05-04 07:41:26] 2026-05-04 05:41:20,810 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-04 07:41:26] 2026-05-04 05:41:20,811 | INFO     | [monitor] control thread has ended
[2026-05-04 07:41:26] 2026-05-04 05:41:25,678 | INFO     | all workflow threads have been joined
[2026-05-04 07:41:26] 2026-05-04 05:41:25,678 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-04 07:41:26] 2026-05-04 05:41:25,679 | INFO     | traces error code: 0
[2026-05-04 07:41:26] 2026-05-04 05:41:25,679 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-04 07:41:26] 2026-05-04 05:41:25,829 [wrapper] ==== pilot stdout END ====
[2026-05-04 07:41:26] 2026-05-04 05:41:25,832 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-04 07:41:26] 2026-05-04 05:41:25,834 [wrapper] pilotpid: 2489092
[2026-05-04 07:41:26] 2026-05-04 05:41:25,837 [wrapper] Pilot exit status: 0
[2026-05-04 07:41:26] 2026-05-04 05:41:25,848 [wrapper] pandaids: 7127811347
[2026-05-04 07:41:26] 2026-05-04 05:41:25,927 [wrapper] cleanup supervisor_pilot 2718534 2489093
[2026-05-04 07:41:26] 2026-05-04 05:41:25,930 [wrapper] Test setup, not cleaning
[2026-05-04 07:41:26] 2026-05-04 05:41:25,933 [wrapper] apfmon messages muted
[2026-05-04 07:41:26] 2026-05-04 05:41:25,937 [wrapper] ==== wrapper stdout END ====
[2026-05-04 07:41:26] 2026-05-04 05:41:25,940 [wrapper] ==== wrapper stderr END ====
[2026-05-04 07:41:26]  *** Error codes and diagnostics ***
[2026-05-04 07:41:26]     "exeErrorCode": 0,
[2026-05-04 07:41:26]     "pilotErrorCode": 0,
[2026-05-04 07:41:26]  *** Listing of results directory ***
[2026-05-04 07:41:26] total 403088
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc    683926 May  3 16:06 pilot3.tar.gz
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc      5631 May  3 16:24 queuedata.json
[2026-05-04 07:41:26] -rwx------. 1 boinc boinc     36322 May  3 16:24 runpilot2-wrapper.sh
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc       100 May  4 04:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-04 07:41:26] -rwxr-xr-x. 1 boinc boinc      7986 May  4 04:58 run_atlas
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc       105 May  4 04:58 job.xml
[2026-05-04 07:41:26] -rw-r--r--. 2 boinc boinc 241818596 May  4 04:58 EVNT.50010716._000026.pool.root.1
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc      6483 May  4 04:58 init_data.xml
[2026-05-04 07:41:26] -rw-r--r--. 2 boinc boinc     15667 May  4 04:58 start_atlas.sh
[2026-05-04 07:41:26] drwxrwx--x. 2 boinc boinc      4096 May  4 04:58 shared
[2026-05-04 07:41:26] -rw-r--r--. 2 boinc boinc    697396 May  4 04:58 input.tar.gz
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc         0 May  4 04:58 boinc_lockfile
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc      2517 May  4 04:58 pandaJob.out
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc   1003025 May  4 04:58 agis_schedconf.cvmfs.json
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc   1508687 May  4 04:58 agis_ddmendpoints.agis.ALL.json
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc       452 May  4 04:59 workernode_map.json
[2026-05-04 07:41:26] drwx------. 5 boinc boinc      4096 May  4 04:59 pilot3
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc       487 May  4 07:40 boinc_task_state.xml
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc 164340956 May  4 07:40 HITS.50010719._000648.pool.root.1
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc        95 May  4 07:40 pilot_heartbeat.json
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc      1034 May  4 07:40 memory_monitor_summary.json
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc    304619 May  4 07:40 log.50010719._000648.job.log.tgz.1
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc      6427 May  4 07:40 heartbeat_new.json
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc      6318 May  4 07:40 heartbeat.json
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc      8192 May  4 07:41 boinc_mmap_file
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc        27 May  4 07:41 wrapper_checkpoint.txt
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc      4832 May  4 07:41 pilotlog.txt
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc    925814 May  4 07:41 log.50010719._000648.job.log.1
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc       357 May  4 07:41 output.list
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc       410 May  4 07:41 runtime_log
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc   1249280 May  4 07:41 result.tar.gz
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc      8827 May  4 07:41 runtime_log.err
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc       662 May  4 07:41 5aafad655cba.diag
[2026-05-04 07:41:26] -rw-r--r--. 1 boinc boinc     21125 May  4 07:41 stderr.txt
[2026-05-04 07:41:26] HITS file was successfully produced:
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc 164340956 May  4 07:40 shared/HITS.pool.root.1
[2026-05-04 07:41:26]  *** Contents of shared directory: ***
[2026-05-04 07:41:26] total 398572
[2026-05-04 07:41:26] -rw-r--r--. 2 boinc boinc 241818596 May  4 04:58 ATLAS.root_0
[2026-05-04 07:41:26] -rw-r--r--. 2 boinc boinc     15667 May  4 04:58 start_atlas.sh
[2026-05-04 07:41:26] -rw-r--r--. 2 boinc boinc    697396 May  4 04:58 input.tar.gz
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc 164340956 May  4 07:40 HITS.pool.root.1
[2026-05-04 07:41:26] -rw-------. 1 boinc boinc   1249280 May  4 07:41 result.tar.gz
07:41:27 (2484982): run_atlas exited; CPU time 37466.453106
07:41:27 (2484982): called boinc_finish(0)

</stderr_txt>
]]>

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