Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:38:13 (118267): wrapper (7.7.26015): starting
18:38:13 (118267): wrapper: running run_atlas (--nthreads 8)
[2026-05-03 18:38:13] Arguments: --nthreads 8
[2026-05-03 18:38:13] Threads: 8
[2026-05-03 18:38:13] Checking for CVMFS
[2026-05-03 18:38:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-03 18:38:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-03 18:38:15] Running cvmfs_config stat atlas.cern.ch
[2026-05-03 18:38:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-03 18:38:16] 2.13.3.0 12373 4848 141664 159184 2 479 29676429 32935936 23913 16776704 0 17819513 99.567 19070908 29882 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-05-03 18:38:16] CVMFS is ok
[2026-05-03 18:38:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 18:38:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 18:38:17] Further information can be found at the LHC@home message board.
[2026-05-03 18:38:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 18:38:17] Checking for apptainer binary...
[2026-05-03 18:38:17] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-03 18:38:17] Running /usr/bin/apptainer --version
[2026-05-03 18:38:17] apptainer version 1.4.5-3.el9
[2026-05-03 18:38:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 18:38:18] c-8-16.aglt2.org
[2026-05-03 18:38:18] apptainer works
[2026-05-03 18:38:18] Set ATHENA_PROC_NUMBER=8
[2026-05-03 18:38:18] Set ATHENA_CORE_NUMBER=8
[2026-05-03 18:38:18] Starting ATLAS job with PandaID=7127757373
[2026-05-03 18:38:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-04 04:55:54]  *** The last 200 lines of the pilot log: ***
[2026-05-04 04:55:54] 2026-05-04 06:38:37,734 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-04 04:55:54] 2026-05-04 06:38:37,734 | INFO     | log transfer has been attempted: DONE
[2026-05-04 04:55:54] 2026-05-04 06:38:37,735 | INFO     | job 7127757373 has finished - writing final server update
[2026-05-04 04:55:54] 2026-05-04 06:38:37,735 | INFO     | total number of processed events: 400 (read)
[2026-05-04 04:55:54] 2026-05-04 06:38:37,839 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7127757373/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 04:55:54] 2026-05-04 06:38:37,840 | INFO     | extracted standard info from prmon json
[2026-05-04 04:55:54] 2026-05-04 06:38:37,841 | INFO     | extracted standard memory fields from prmon json
[2026-05-04 04:55:54] 2026-05-04 06:38:37,866 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-04 04:55:54] 2026-05-04 06:38:37,867 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-04 04:55:54] 2026-05-04 06:38:37,971 | INFO     | fitting pss+swap vs Time
[2026-05-04 04:55:54] 2026-05-04 06:38:37,973 | INFO     | sum of square deviations: 31586566140.62961
[2026-05-04 04:55:54] 2026-05-04 06:38:37,979 | INFO     | sum of deviations: 109518645712.46698
[2026-05-04 04:55:54] 2026-05-04 06:38:37,979 | INFO     | mean x (centered): 0.0
[2026-05-04 04:55:54] 2026-05-04 06:38:37,979 | INFO     | mean y: 2461021.528907923
[2026-05-04 04:55:54] 2026-05-04 06:38:37,979 | INFO     | intersect: 2461021.528907923
[2026-05-04 04:55:54] 2026-05-04 06:38:37,980 | INFO     | chi2: 9.316914790063102
[2026-05-04 04:55:54] 2026-05-04 06:38:37,981 | INFO     | sum of square deviations: 30583157521.991398
[2026-05-04 04:55:54] 2026-05-04 06:38:37,986 | INFO     | sum of deviations: 255070291255.2338
[2026-05-04 04:55:54] 2026-05-04 06:38:37,986 | INFO     | mean x (centered): 0.0
[2026-05-04 04:55:54] 2026-05-04 06:38:37,987 | INFO     | mean y: 2483142.116883117
[2026-05-04 04:55:54] 2026-05-04 06:38:37,987 | INFO     | intersect: 2483142.116883117
[2026-05-04 04:55:54] 2026-05-04 06:38:37,987 | INFO     | chi2: 5.7764391510712585
[2026-05-04 04:55:54] 2026-05-04 06:38:37,988 | INFO     | current chi2=5.7764391510712585 (change=38.00051539344243 %)
[2026-05-04 04:55:54] 2026-05-04 06:38:37,988 | INFO     | sum of square deviations: 29601012710.205627
[2026-05-04 04:55:54] 2026-05-04 06:38:37,994 | INFO     | sum of deviations: 284513310713.6124
[2026-05-04 04:55:54] 2026-05-04 06:38:37,994 | INFO     | mean x (centered): 0.0
[2026-05-04 04:55:54] 2026-05-04 06:38:37,994 | INFO     | mean y: 2487671.2472647703
[2026-05-04 04:55:54] 2026-05-04 06:38:37,994 | INFO     | intersect: 2487671.2472647703
[2026-05-04 04:55:54] 2026-05-04 06:38:37,995 | INFO     | chi2: 4.967859089084021
[2026-05-04 04:55:54] 2026-05-04 06:38:37,995 | INFO     | current chi2=4.967859089084021 (change=13.99789802749474 %)
[2026-05-04 04:55:54] 2026-05-04 06:38:37,995 | INFO     | right removable region: 456
[2026-05-04 04:55:54] 2026-05-04 06:38:37,996 | INFO     | sum of square deviations: 30582820006.99777
[2026-05-04 04:55:54] 2026-05-04 06:38:38,002 | INFO     | sum of deviations: -35060288191.64507
[2026-05-04 04:55:54] 2026-05-04 06:38:38,002 | INFO     | mean x (centered): 0.0
[2026-05-04 04:55:54] 2026-05-04 06:38:38,002 | INFO     | mean y: 2482967.354978355
[2026-05-04 04:55:54] 2026-05-04 06:38:38,002 | INFO     | intersect: 2482967.354978355
[2026-05-04 04:55:54] 2026-05-04 06:38:38,003 | INFO     | chi2: 5.761438315079211
[2026-05-04 04:55:54] 2026-05-04 06:38:38,003 | INFO     | current chi2=5.761438315079211 (change=38.16152186747444 %)
[2026-05-04 04:55:54] 2026-05-04 06:38:38,004 | INFO     | sum of square deviations: 29600675870.24516
[2026-05-04 04:55:54] 2026-05-04 06:38:38,009 | INFO     | sum of deviations: -102055411317.85999
[2026-05-04 04:55:54] 2026-05-04 06:38:38,010 | INFO     | mean x (centered): 0.0
[2026-05-04 04:55:54] 2026-05-04 06:38:38,010 | INFO     | mean y: 2493345.5733041577
[2026-05-04 04:55:54] 2026-05-04 06:38:38,010 | INFO     | intersect: 2493345.5733041577
[2026-05-04 04:55:54] 2026-05-04 06:38:38,011 | INFO     | chi2: 4.92445921468873
[2026-05-04 04:55:54] 2026-05-04 06:38:38,011 | INFO     | current chi2=4.92445921468873 (change=14.527259594186493 %)
[2026-05-04 04:55:54] 2026-05-04 06:38:38,011 | INFO     | left removable region: 10
[2026-05-04 04:55:54] 2026-05-04 06:38:38,011 | INFO     | sum of square deviations: 27514653820.97974
[2026-05-04 04:55:54] 2026-05-04 06:38:38,016 | INFO     | sum of deviations: 73617264745.68375
[2026-05-04 04:55:54] 2026-05-04 06:38:38,017 | INFO     | mean x (centered): 0.0
[2026-05-04 04:55:54] 2026-05-04 06:38:38,017 | INFO     | mean y: 2521296.105381166
[2026-05-04 04:55:54] 2026-05-04 06:38:38,017 | INFO     | intersect: 2521296.105381166
[2026-05-04 04:55:54] 2026-05-04 06:38:38,018 | INFO     | chi2: 0.4531567348781245
[2026-05-04 04:55:54] 2026-05-04 06:38:38,018 | INFO     | current memory leak: 2.68 B/s (using 446 data points, chi2=0.45)
[2026-05-04 04:55:54] 2026-05-04 06:38:38,019 | INFO     | could have reported an average CPU frequency of 2600 MHz (19 samples)
[2026-05-04 04:55:54] 2026-05-04 06:38:38,019 | INFO     | ..............................
[2026-05-04 04:55:54] 2026-05-04 06:38:38,019 | INFO     | . Timing measurements:
[2026-05-04 04:55:54] 2026-05-04 06:38:38,019 | INFO     | . get job = 0 s
[2026-05-04 04:55:54] 2026-05-04 06:38:38,019 | INFO     | . initial setup = 59 s
[2026-05-04 04:55:54] 2026-05-04 06:38:38,019 | INFO     | . payload setup = 88 s
[2026-05-04 04:55:54] 2026-05-04 06:38:38,019 | INFO     | . stage-in = 0 s
[2026-05-04 04:55:54] 2026-05-04 06:38:38,019 | INFO     | . payload execution = 28524 s
[2026-05-04 04:55:54] 2026-05-04 06:38:38,020 | INFO     | . stage-out = 15 s
[2026-05-04 04:55:54] 2026-05-04 06:38:38,020 | INFO     | . log creation = 3 s
[2026-05-04 04:55:54] 2026-05-04 06:38:38,020 | INFO     | ..............................
[2026-05-04 04:55:54] 2026-05-04 06:38:40,322 | INFO     | 
[2026-05-04 04:55:54] 2026-05-04 06:38:40,323 | INFO     | job summary report
[2026-05-04 04:55:54] 2026-05-04 06:38:40,324 | INFO     | --------------------------------------------------
[2026-05-04 04:55:54] 2026-05-04 06:38:40,324 | INFO     | PanDA job id: 7127757373
[2026-05-04 04:55:54] 2026-05-04 06:38:40,324 | INFO     | task id: 50011124
[2026-05-04 04:55:54] 2026-05-04 06:38:40,324 | INFO     | errors: (none)
[2026-05-04 04:55:54] 2026-05-04 06:38:40,324 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-04 04:55:54] 2026-05-04 06:38:40,324 | INFO     | pilot state: finished 
[2026-05-04 04:55:54] 2026-05-04 06:38:40,324 | INFO     | transexitcode: 0
[2026-05-04 04:55:54] 2026-05-04 06:38:40,324 | INFO     | exeerrorcode: 0
[2026-05-04 04:55:54] 2026-05-04 06:38:40,324 | INFO     | exeerrordiag: 
[2026-05-04 04:55:54] 2026-05-04 06:38:40,325 | INFO     | exitcode: 0
[2026-05-04 04:55:54] 2026-05-04 06:38:40,325 | INFO     | exitmsg: OK
[2026-05-04 04:55:54] 2026-05-04 06:38:40,325 | INFO     | cpuconsumptiontime: 47276 s
[2026-05-04 04:55:54] 2026-05-04 06:38:40,325 | INFO     | nevents: 400
[2026-05-04 04:55:54] 2026-05-04 06:38:40,325 | INFO     | neventsw: 0
[2026-05-04 04:55:54] 2026-05-04 06:38:40,325 | INFO     | pid: 135894
[2026-05-04 04:55:54] 2026-05-04 06:38:40,325 | INFO     | pgrp: 135894
[2026-05-04 04:55:54] 2026-05-04 06:38:40,325 | INFO     | corecount: 8
[2026-05-04 04:55:54] 2026-05-04 06:38:40,325 | INFO     | event service: False
[2026-05-04 04:55:54] 2026-05-04 06:38:40,325 | INFO     | sizes: {0: 2274671, 1: 2275272, 2: 2275356, 3: 2275412, 4: 2275785, 5: 2277425, 17: 2277425, 28617: 2314303, 28618: 2314302, 28636: 2323356, 28637: 2323412, 28639:
[2026-05-04 04:55:54] 2026-05-04 06:38:40,326 | INFO     | --------------------------------------------------
[2026-05-04 04:55:54] 2026-05-04 06:38:40,326 | INFO     | 
[2026-05-04 04:55:54] 2026-05-04 06:38:40,326 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-05-04 04:55:54] 2026-05-04 06:38:40,567 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,568 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,568 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,568 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,568 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,568 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,568 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,569 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,569 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,569 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,569 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,569 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,569 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,569 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,569 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,570 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,570 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,570 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-04 04:55:54] 2026-05-04 06:38:40,570 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,570 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-04 04:55:54] 2026-05-04 06:38:40,604 | INFO     | job 7127757373 has completed (purged errors)
[2026-05-04 04:55:54] 2026-05-04 06:38:40,605 | INFO     | overall cleanup function is called
[2026-05-04 04:55:54] 2026-05-04 06:38:41,697 | INFO     | --- collectZombieJob: --- 10, [135894]
[2026-05-04 04:55:54] 2026-05-04 06:38:41,697 | INFO     | zombie collector waiting for pid 135894
[2026-05-04 04:55:54] 2026-05-04 06:38:41,698 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-04 04:55:54] 2026-05-04 06:38:41,698 | INFO     | collected zombie processes
[2026-05-04 04:55:54] 2026-05-04 06:38:41,698 | INFO     | will attempt to kill all subprocesses of pid=135894
[2026-05-04 04:55:54] 2026-05-04 06:38:49,995 | INFO     | process IDs to be killed: [135894] (in reverse order)
[2026-05-04 04:55:54] 2026-05-04 06:38:50,148 | INFO     | PID=126054 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-04 04:55:54] 2026-05-04 06:38:50,148 | INFO     | .. there are 29 such processes running
[2026-05-04 04:55:54] 2026-05-04 06:38:50,427 | WARNING  | found no corresponding commands to process id(s)
[2026-05-04 04:55:54] 2026-05-04 06:38:50,427 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-04 04:55:54] 2026-05-04 06:38:50,453 | INFO     | did not find any defunct processes belonging to 135894
[2026-05-04 04:55:54] 2026-05-04 06:38:50,481 | INFO     | did not find any defunct processes belonging to 135894
[2026-05-04 04:55:54] 2026-05-04 06:38:50,481 | INFO     | Ready for new job
[2026-05-04 04:55:54] 2026-05-04 06:38:50,491 | INFO     | ***************************************
[2026-05-04 04:55:54] 2026-05-04 06:38:50,491 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-04 04:55:54] 2026-05-04 06:38:50,491 | INFO     | ***************************************
[2026-05-04 04:55:54] 2026-05-04 06:38:50,491 | INFO     | 
[2026-05-04 04:55:54] 2026-05-04 06:38:50,493 | INFO     | architecture information:
[2026-05-04 04:55:54] 2026-05-04 06:38:50,493 | INFO     | executing command: cat /etc/os-release
[2026-05-04 04:55:54] 2026-05-04 06:38:50,643 | INFO     | cat /etc/os-release:
[2026-05-04 04:55:54] NAME="CentOS Linux"
[2026-05-04 04:55:54] VERSION="7 (Core)"
[2026-05-04 04:55:54] ID="centos"
[2026-05-04 04:55:54] ID_LIKE="rhel fedora"
[2026-05-04 04:55:54] VERSION_ID="7"
[2026-05-04 04:55:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-04 04:55:54] ANSI_COLOR="0;31"
[2026-05-04 04:55:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-04 04:55:54] HOME_URL="https://www.centos.org/"
[2026-05-04 04:55:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-04 04:55:54] 
[2026-05-04 04:55:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-04 04:55:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-04 04:55:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-04 04:55:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-04 04:55:54] 
[2026-05-04 04:55:54] 2026-05-04 06:38:50,644 | INFO     | ***************************************
[2026-05-04 04:55:54] 2026-05-04 06:38:51,147 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-05-04 04:55:54] 2026-05-04 06:38:51,550 | INFO     | sufficient remaining disk space (75353817088 B)
[2026-05-04 04:55:54] 2026-05-04 06:38:51,551 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-04 04:55:54] 2026-05-04 06:38:51,551 | INFO     | current server update state: UPDATING_FINAL
[2026-05-04 04:55:54] 2026-05-04 06:38:51,551 | INFO     | update_server=False
[2026-05-04 04:55:54] 2026-05-04 06:38:51,551 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-04 04:55:54] 2026-05-04 06:38:51,563 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-04 04:55:54] 2026-05-04 06:38:51,563 | INFO     | aborting loop
[2026-05-04 04:55:54] 2026-05-04 06:38:51,932 | INFO     | all data control threads have been joined
[2026-05-04 04:55:54] 2026-05-04 06:38:52,150 | INFO     | all job control threads have been joined
[2026-05-04 04:55:54] 2026-05-04 06:38:52,484 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-04 04:55:54] 2026-05-04 06:38:52,557 | INFO     | [job] retrieve thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:52,581 | INFO     | [job] job monitor thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:52,972 | INFO     | [data] control thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:53,038 | INFO     | all payload control threads have been joined
[2026-05-04 04:55:54] 2026-05-04 06:38:53,119 | INFO     | [payload] validate_post thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:53,158 | INFO     | [job] control thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:53,224 | INFO     | [payload] failed_post thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:53,322 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-04 04:55:54] 2026-05-04 06:38:53,366 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:53,368 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-04 04:55:54] 2026-05-04 06:38:53,591 | INFO     | [payload] validate_pre thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:53,611 | INFO     | [payload] execute_payloads thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:53,654 | INFO     | [data] copytool_in thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:53,874 | INFO     | [job] create_data_payload thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:54,044 | INFO     | [payload] control thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:54,143 | INFO     | [job] validate thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:54,374 | INFO     | [job] queue monitor thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:54,493 | INFO     | [data] copytool_out thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:57,372 | INFO     | [data] queue_monitor thread has finished
[2026-05-04 04:55:54] 2026-05-04 06:38:59,820 | INFO     | [monitor] cgroup control has ended
[2026-05-04 04:55:54] 2026-05-04 06:39:01,310 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140110534645568)>', '<ExcThread(monitor, started 140110196623104)>']
[2026-05-04 04:55:54] 2026-05-04 06:39:06,338 | INFO     | all workflow threads have been joined
[2026-05-04 04:55:54] 2026-05-04 06:39:06,338 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-04 04:55:54] 2026-05-04 06:39:06,339 | INFO     | traces error code: 0
[2026-05-04 04:55:54] 2026-05-04 06:39:06,339 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-04 04:55:54] 2026-05-04 06:39:43,993 | INFO     | PID=126054 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-04 04:55:54] 2026-05-04 06:39:43,993 | INFO     | .. there are 29 such processes running
[2026-05-04 04:55:54] 2026-05-04 06:39:43,999 | INFO     | found 0 job(s) in 20 queues
[2026-05-04 04:55:54] 2026-05-04 06:39:43,999 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-04 04:55:54] 2026-05-04 06:39:43,999 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-04 04:55:54] 2026-05-04 06:39:44,000 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-04 04:55:54] 2026-05-04 06:39:44,000 | INFO     | [monitor] control thread has ended
[2026-05-04 04:55:54] 2026-05-04 06:39:45,875 [wrapper] ==== pilot stdout END ====
[2026-05-04 04:55:54] 2026-05-04 06:39:45,909 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-04 04:55:54] 2026-05-04 06:39:45,953 [wrapper] pilotpid: 126054
[2026-05-04 04:55:54] 2026-05-04 06:39:46,006 [wrapper] Pilot exit status: 0
[2026-05-04 04:55:54] 2026-05-04 06:39:46,196 [wrapper] pandaids: 7127757373
[2026-05-04 04:55:54] 2026-05-04 06:39:46,436 [wrapper] cleanup supervisor_pilot 1427524 126055
[2026-05-04 04:55:54] 2026-05-04 06:39:46,471 [wrapper] Test setup, not cleaning
[2026-05-04 04:55:54] 2026-05-04 06:39:46,496 [wrapper] apfmon messages muted
[2026-05-04 04:55:54] 2026-05-04 06:39:46,548 [wrapper] ==== wrapper stdout END ====
[2026-05-04 04:55:54] 2026-05-04 06:39:46,588 [wrapper] ==== wrapper stderr END ====
[2026-05-04 04:55:54]  *** Error codes and diagnostics ***
[2026-05-04 04:55:54]     "exeErrorCode": 0,
[2026-05-04 04:55:54]     "pilotErrorCode": 0,
[2026-05-04 04:55:54]  *** Listing of results directory ***
[2026-05-04 04:55:54] total 409788
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas    683926 May  3 07:53 pilot3.tar.gz
[2026-05-04 04:55:54] -rwx------. 1 boincer umatlas     36322 May  3 08:56 runpilot2-wrapper.sh
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas      5631 May  3 08:56 queuedata.json
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas       100 May  3 18:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-04 04:55:54] -rwxr-xr-x. 1 boincer umatlas      7986 May  3 18:38 run_atlas
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas       105 May  3 18:38 job.xml
[2026-05-04 04:55:54] -rw-r--r--. 2 boincer umatlas 242232976 May  3 18:38 EVNT.50011119._000004.pool.root.1
[2026-05-04 04:55:54] drwxrwx--x. 2 boincer umatlas      4096 May  3 18:38 shared
[2026-05-04 04:55:54] -rw-r--r--. 2 boincer umatlas    697393 May  3 18:38 input.tar.gz
[2026-05-04 04:55:54] -rw-r--r--. 2 boincer umatlas     15667 May  3 18:38 start_atlas.sh
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas         0 May  3 18:38 boinc_lockfile
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas      2558 May  3 18:38 pandaJob.out
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas        57 May  3 18:38 setup.sh.local
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas   1003017 May  3 18:40 agis_schedconf.cvmfs.json
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas       440 May  3 18:40 workernode_map.json
[2026-05-04 04:55:54] drwx------. 5 boincer umatlas      4096 May  3 18:41 pilot3
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas 167744662 May  4 02:31 HITS.50011124._000164.pool.root.1
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas       489 May  4 02:32 boinc_task_state.xml
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas      1052 May  4 02:38 memory_monitor_summary.json
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas   1508687 May  4 02:38 agis_ddmendpoints.agis.ALL.json
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas    507031 May  4 02:38 log.50011124._000164.job.log.tgz.1
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas      6424 May  4 02:38 heartbeat_new.json
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas      6315 May  4 02:38 heartbeat.json
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas        95 May  4 02:39 pilot_heartbeat.json
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas       822 May  4 02:39 pilotlog.txt
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas   2245764 May  4 02:39 log.50011124._000164.job.log.1
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas       357 May  4 02:39 output.list
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas       410 May  4 02:39 runtime_log
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas   2775040 May  4 02:39 result.tar.gz
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas      8955 May  4 02:39 runtime_log.err
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas       661 May  4 02:39 45e97e0d0376.diag
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas      6573 May  4 04:55 init_data.xml
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas        28 May  4 04:55 wrapper_checkpoint.txt
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas      8192 May  4 04:55 boinc_mmap_file
[2026-05-04 04:55:54] -rw-r--r--. 1 boincer umatlas     21161 May  4 04:55 stderr.txt
[2026-05-04 04:55:54] HITS file was successfully produced:
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas 167744662 May  4 02:31 shared/HITS.pool.root.1
[2026-05-04 04:55:54]  *** Contents of shared directory: ***
[2026-05-04 04:55:54] total 403788
[2026-05-04 04:55:54] -rw-r--r--. 2 boincer umatlas 242232976 May  3 18:38 ATLAS.root_0
[2026-05-04 04:55:54] -rw-r--r--. 2 boincer umatlas    697393 May  3 18:38 input.tar.gz
[2026-05-04 04:55:54] -rw-r--r--. 2 boincer umatlas     15667 May  3 18:38 start_atlas.sh
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas 167744662 May  4 02:31 HITS.pool.root.1
[2026-05-04 04:55:54] -rw-------. 1 boincer umatlas   2775040 May  4 02:39 result.tar.gz
04:55:55 (118267): run_atlas exited; CPU time 48062.537172
04:55:55 (118267): called boinc_finish(0)

</stderr_txt>
]]>

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