Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:28:58 (30009): wrapper (7.7.26015): starting
00:28:58 (30009): wrapper: running run_atlas (--nthreads 4)
[2026-05-04 00:28:58] Arguments: --nthreads 4
[2026-05-04 00:28:58] Threads: 4
[2026-05-04 00:28:58] Checking for CVMFS
[2026-05-04 00:28:58] No cvmfs_config command found, will try listing directly
[2026-05-04 00:28:58] CVMFS is ok
[2026-05-04 00:28:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-04 00:28:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-04 00:28:58] Further information can be found at the LHC@home message board.
[2026-05-04 00:28:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-04 00:28:58] Checking for apptainer binary...
[2026-05-04 00:28:58] which: no apptainer in ((null))
[2026-05-04 00:28:58] apptainer is not installed, using version from CVMFS
[2026-05-04 00:28:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-04 00:28:58] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot24/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut08.grid.cesnet.cz
[2026-05-04 00:28:58] apptainer works
[2026-05-04 00:28:58] Set ATHENA_PROC_NUMBER=4
[2026-05-04 00:28:58] Set ATHENA_CORE_NUMBER=4
[2026-05-04 00:28:58] Starting ATLAS job with PandaID=7127241524
[2026-05-04 00:28:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot24/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-04 03:33:54]  *** The last 200 lines of the pilot log: ***
[2026-05-04 03:33:54] 2026-05-04 01:32:53,850 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-04 03:33:54] 2026-05-04 01:32:54,616 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-04 03:33:54] 2026-05-04 01:32:54,708 | INFO     | job 7127241524 has state=finished
[2026-05-04 03:33:54] 2026-05-04 01:32:54,709 | INFO     | preparing for final server update for job 7127241524 in state='finished'
[2026-05-04 03:33:54] 2026-05-04 01:32:54,709 | INFO     | reading metadata from: /var/lib/boinc/var/slot24/slots/3/PanDA_Pilot-7127241524/jobReport.json
[2026-05-04 03:33:54] 2026-05-04 01:32:54,712 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot24/slots/3/workernode_map.json
[2026-05-04 03:33:54] 2026-05-04 01:32:54,712 | INFO     | this job has now completed (state=finished)
[2026-05-04 03:33:54] 2026-05-04 01:32:54,712 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-04 03:33:54] 2026-05-04 01:32:54,712 | INFO     | log transfer has been attempted: DONE
[2026-05-04 03:33:54] 2026-05-04 01:32:54,713 | INFO     | job 7127241524 has finished - writing final server update
[2026-05-04 03:33:54] 2026-05-04 01:32:54,716 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_267303/.job.ad'
[2026-05-04 03:33:54] 2026-05-04 01:32:54,716 | INFO     | total number of processed events: 400 (read)
[2026-05-04 03:33:54] 2026-05-04 01:32:54,728 | INFO     | using path: /var/lib/boinc/var/slot24/slots/3/PanDA_Pilot-7127241524/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 03:33:54] 2026-05-04 01:32:54,729 | INFO     | extracted standard info from prmon json
[2026-05-04 03:33:54] 2026-05-04 01:32:54,733 | INFO     | extracted standard memory fields from prmon json
[2026-05-04 03:33:54] 2026-05-04 01:32:54,734 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-04 03:33:54] 2026-05-04 01:32:54,734 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-04 03:33:54] 2026-05-04 01:32:54,737 | INFO     | fitting pss+swap vs Time
[2026-05-04 03:33:54] 2026-05-04 01:32:54,737 | INFO     | sum of square deviations: 1808360738.9944415
[2026-05-04 03:33:54] 2026-05-04 01:32:54,739 | INFO     | sum of deviations: 6162877693.100001
[2026-05-04 03:33:54] 2026-05-04 01:32:54,739 | INFO     | mean x (centered): 0.0
[2026-05-04 03:33:54] 2026-05-04 01:32:54,739 | INFO     | mean y: 2349803.9
[2026-05-04 03:33:54] 2026-05-04 01:32:54,739 | INFO     | intersect: 2349803.9
[2026-05-04 03:33:54] 2026-05-04 01:32:54,739 | INFO     | chi2: 1.4447784173945144
[2026-05-04 03:33:54] 2026-05-04 01:32:54,739 | INFO     | sum of square deviations: 1661798600.0
[2026-05-04 03:33:54] 2026-05-04 01:32:54,740 | INFO     | sum of deviations: 6099905877.000004
[2026-05-04 03:33:54] 2026-05-04 01:32:54,741 | INFO     | mean x (centered): 0.0
[2026-05-04 03:33:54] 2026-05-04 01:32:54,741 | INFO     | mean y: 2349738.2285714285
[2026-05-04 03:33:54] 2026-05-04 01:32:54,741 | INFO     | intersect: 2349738.2285714285
[2026-05-04 03:33:54] 2026-05-04 01:32:54,741 | INFO     | chi2: 1.445625429482657
[2026-05-04 03:33:54] 2026-05-04 01:32:54,741 | INFO     | current chi2=1.445625429482657 (change=-0.05862574343199385 %)
[2026-05-04 03:33:54] 2026-05-04 01:32:54,741 | INFO     | right removable region: 174
[2026-05-04 03:33:54] 2026-05-04 01:32:54,742 | INFO     | sum of square deviations: 1661808848.9942875
[2026-05-04 03:33:54] 2026-05-04 01:32:54,743 | INFO     | sum of deviations: -17579097380.29143
[2026-05-04 03:33:54] 2026-05-04 01:32:54,743 | INFO     | mean x (centered): 0.0
[2026-05-04 03:33:54] 2026-05-04 01:32:54,743 | INFO     | mean y: 2374150.2914285716
[2026-05-04 03:33:54] 2026-05-04 01:32:54,743 | INFO     | intersect: 2374150.2914285716
[2026-05-04 03:33:54] 2026-05-04 01:32:54,743 | INFO     | chi2: 0.04015949540537378
[2026-05-04 03:33:54] 2026-05-04 01:32:54,743 | INFO     | current chi2=0.04015949540537378 (change=97.22036992511305 %)
[2026-05-04 03:33:54] 2026-05-04 01:32:54,744 | INFO     | sum of square deviations: 1523396646.494113
[2026-05-04 03:33:54] 2026-05-04 01:32:54,745 | INFO     | sum of deviations: -15744314405.89412
[2026-05-04 03:33:54] 2026-05-04 01:32:54,745 | INFO     | mean x (centered): 0.0
[2026-05-04 03:33:54] 2026-05-04 01:32:54,745 | INFO     | mean y: 2372111.894117647
[2026-05-04 03:33:54] 2026-05-04 01:32:54,745 | INFO     | intersect: 2372111.894117647
[2026-05-04 03:33:54] 2026-05-04 01:32:54,745 | INFO     | chi2: 0.037699338739019136
[2026-05-04 03:33:54] 2026-05-04 01:32:54,745 | INFO     | current chi2=0.037699338739019136 (change=6.125965083778038 %)
[2026-05-04 03:33:54] 2026-05-04 01:32:54,745 | INFO     | left removable region: 10
[2026-05-04 03:33:54] 2026-05-04 01:32:54,746 | INFO     | sum of square deviations: 1367709365.0
[2026-05-04 03:33:54] 2026-05-04 01:32:54,747 | INFO     | sum of deviations: -15125572901.500002
[2026-05-04 03:33:54] 2026-05-04 01:32:54,747 | INFO     | mean x (centered): 0.0
[2026-05-04 03:33:54] 2026-05-04 01:32:54,747 | INFO     | mean y: 2372839.225609756
[2026-05-04 03:33:54] 2026-05-04 01:32:54,747 | INFO     | intersect: 2372839.225609756
[2026-05-04 03:33:54] 2026-05-04 01:32:54,748 | INFO     | chi2: 0.03646049651940675
[2026-05-04 03:33:54] 2026-05-04 01:32:54,748 | INFO     | current memory leak: -11.06 B/s (using 164 data points, chi2=0.04)
[2026-05-04 03:33:54] 2026-05-04 01:32:54,748 | INFO     | could have reported an average CPU frequency of 2549 MHz (10 samples)
[2026-05-04 03:33:54] 2026-05-04 01:32:54,749 | INFO     | ..............................
[2026-05-04 03:33:54] 2026-05-04 01:32:54,749 | INFO     | . Timing measurements:
[2026-05-04 03:33:54] 2026-05-04 01:32:54,749 | INFO     | . get job = 0 s
[2026-05-04 03:33:54] 2026-05-04 01:32:54,749 | INFO     | . initial setup = 9 s
[2026-05-04 03:33:54] 2026-05-04 01:32:54,749 | INFO     | . payload setup = 17 s
[2026-05-04 03:33:54] 2026-05-04 01:32:54,749 | INFO     | . stage-in = 0 s
[2026-05-04 03:33:54] 2026-05-04 01:32:54,749 | INFO     | . payload execution = 10968 s
[2026-05-04 03:33:54] 2026-05-04 01:32:54,749 | INFO     | . stage-out = 1 s
[2026-05-04 03:33:54] 2026-05-04 01:32:54,749 | INFO     | . log creation = 0 s
[2026-05-04 03:33:54] 2026-05-04 01:32:54,749 | INFO     | ..............................
[2026-05-04 03:33:54] 2026-05-04 01:32:55,262 | INFO     | 
[2026-05-04 03:33:54] 2026-05-04 01:32:55,262 | INFO     | job summary report
[2026-05-04 03:33:54] 2026-05-04 01:32:55,263 | INFO     | --------------------------------------------------
[2026-05-04 03:33:54] 2026-05-04 01:32:55,263 | INFO     | PanDA job id: 7127241524
[2026-05-04 03:33:54] 2026-05-04 01:32:55,263 | INFO     | task id: 50010727
[2026-05-04 03:33:54] 2026-05-04 01:32:55,263 | INFO     | errors: (none)
[2026-05-04 03:33:54] 2026-05-04 01:32:55,263 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-04 03:33:54] 2026-05-04 01:32:55,263 | INFO     | pilot state: finished 
[2026-05-04 03:33:54] 2026-05-04 01:32:55,263 | INFO     | transexitcode: 0
[2026-05-04 03:33:54] 2026-05-04 01:32:55,263 | INFO     | exeerrorcode: 0
[2026-05-04 03:33:54] 2026-05-04 01:32:55,263 | INFO     | exeerrordiag: 
[2026-05-04 03:33:54] 2026-05-04 01:32:55,263 | INFO     | exitcode: 0
[2026-05-04 03:33:54] 2026-05-04 01:32:55,263 | INFO     | exitmsg: OK
[2026-05-04 03:33:54] 2026-05-04 01:32:55,263 | INFO     | cpuconsumptiontime: 38977 s
[2026-05-04 03:33:54] 2026-05-04 01:32:55,264 | INFO     | nevents: 400
[2026-05-04 03:33:54] 2026-05-04 01:32:55,264 | INFO     | neventsw: 0
[2026-05-04 03:33:54] 2026-05-04 01:32:55,264 | INFO     | pid: 38792
[2026-05-04 03:33:54] 2026-05-04 01:32:55,264 | INFO     | pgrp: 38792
[2026-05-04 03:33:54] 2026-05-04 01:32:55,264 | INFO     | corecount: 4
[2026-05-04 03:33:54] 2026-05-04 01:32:55,264 | INFO     | event service: False
[2026-05-04 03:33:54] 2026-05-04 01:32:55,264 | INFO     | sizes: {0: 2275356, 1: 2277185, 11: 2277185, 10989: 2306259, 10991: 2315279, 10993: 2315657}
[2026-05-04 03:33:54] 2026-05-04 01:32:55,264 | INFO     | --------------------------------------------------
[2026-05-04 03:33:54] 2026-05-04 01:32:55,264 | INFO     | 
[2026-05-04 03:33:54] 2026-05-04 01:32:55,264 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot24/slots/3
[2026-05-04 03:33:54] 2026-05-04 01:32:55,293 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,293 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,293 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,293 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,293 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,294 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,294 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,294 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,294 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,294 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,294 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,294 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,294 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,294 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,294 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,294 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,294 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,295 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-04 03:33:54] 2026-05-04 01:32:55,295 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,295 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-04 03:33:54] 2026-05-04 01:32:55,295 | INFO     | job 7127241524 has completed (purged errors)
[2026-05-04 03:33:54] 2026-05-04 01:32:55,295 | INFO     | overall cleanup function is called
[2026-05-04 03:33:54] 2026-05-04 01:32:56,302 | INFO     | --- collectZombieJob: --- 10, [38792]
[2026-05-04 03:33:54] 2026-05-04 01:32:56,302 | INFO     | zombie collector waiting for pid 38792
[2026-05-04 03:33:54] 2026-05-04 01:32:56,303 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-04 03:33:54] 2026-05-04 01:32:56,303 | INFO     | collected zombie processes
[2026-05-04 03:33:54] 2026-05-04 01:32:56,303 | INFO     | will attempt to kill all subprocesses of pid=38792
[2026-05-04 03:33:54] 2026-05-04 01:32:56,696 | INFO     | process IDs to be killed: [38792] (in reverse order)
[2026-05-04 03:33:54] 2026-05-04 01:32:56,890 | WARNING  | found no corresponding commands to process id(s)
[2026-05-04 03:33:54] 2026-05-04 01:32:56,890 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-04 03:33:54] 2026-05-04 01:32:56,906 | INFO     | did not find any defunct processes belonging to 38792
[2026-05-04 03:33:54] 2026-05-04 01:32:56,918 | INFO     | did not find any defunct processes belonging to 38792
[2026-05-04 03:33:54] 2026-05-04 01:32:56,919 | INFO     | Ready for new job
[2026-05-04 03:33:54] 2026-05-04 01:32:56,920 | INFO     | ***************************************
[2026-05-04 03:33:54] 2026-05-04 01:32:56,921 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-04 03:33:54] 2026-05-04 01:32:56,921 | INFO     | ***************************************
[2026-05-04 03:33:54] 2026-05-04 01:32:56,921 | INFO     | 
[2026-05-04 03:33:54] 2026-05-04 01:32:56,924 | INFO     | architecture information:
[2026-05-04 03:33:54] 2026-05-04 01:32:56,925 | INFO     | executing command: cat /etc/os-release
[2026-05-04 03:33:54] 2026-05-04 01:32:56,946 | INFO     | cat /etc/os-release:
[2026-05-04 03:33:54] NAME="CentOS Linux"
[2026-05-04 03:33:54] VERSION="7 (Core)"
[2026-05-04 03:33:54] ID="centos"
[2026-05-04 03:33:54] ID_LIKE="rhel fedora"
[2026-05-04 03:33:54] VERSION_ID="7"
[2026-05-04 03:33:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-04 03:33:54] ANSI_COLOR="0;31"
[2026-05-04 03:33:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-04 03:33:54] HOME_URL="https://www.centos.org/"
[2026-05-04 03:33:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-04 03:33:54] 
[2026-05-04 03:33:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-04 03:33:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-04 03:33:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-04 03:33:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-04 03:33:54] 
[2026-05-04 03:33:54] 2026-05-04 01:32:56,946 | INFO     | ***************************************
[2026-05-04 03:33:54] 2026-05-04 01:32:57,448 | INFO     | executing command: df -mP /var/lib/boinc/var/slot24/slots/3
[2026-05-04 03:33:54] 2026-05-04 01:32:57,468 | INFO     | sufficient remaining disk space (49033510912 B)
[2026-05-04 03:33:54] 2026-05-04 01:32:57,468 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-04 03:33:54] 2026-05-04 01:32:57,469 | INFO     | current server update state: UPDATING_FINAL
[2026-05-04 03:33:54] 2026-05-04 01:32:57,469 | INFO     | update_server=False
[2026-05-04 03:33:54] 2026-05-04 01:32:57,469 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-04 03:33:54] 2026-05-04 01:32:57,469 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-04 03:33:54] 2026-05-04 01:32:57,469 | INFO     | aborting loop
[2026-05-04 03:33:54] 2026-05-04 01:32:57,517 | INFO     | all data control threads have been joined
[2026-05-04 03:33:54] 2026-05-04 01:32:58,399 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-04 03:33:54] 2026-05-04 01:32:58,473 | INFO     | [job] retrieve thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:32:58,474 | INFO     | [job] job monitor thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:32:58,522 | INFO     | [data] control thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:32:58,611 | INFO     | [payload] validate_pre thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:32:58,668 | INFO     | all payload control threads have been joined
[2026-05-04 03:33:54] 2026-05-04 01:32:58,845 | INFO     | [payload] failed_post thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:32:58,956 | INFO     | [payload] validate_post thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:32:58,985 | INFO     | all job control threads have been joined
[2026-05-04 03:33:54] 2026-05-04 01:32:59,349 | INFO     | [job] validate thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:32:59,673 | INFO     | [payload] control thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:32:59,755 | INFO     | [data] copytool_in thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:32:59,756 | INFO     | [payload] execute_payloads thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:32:59,845 | INFO     | [job] create_data_payload thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:32:59,852 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-04 03:33:54] 2026-05-04 01:32:59,990 | INFO     | [job] control thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:33:00,404 | INFO     | [data] copytool_out thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:33:00,714 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-04 03:33:54] 2026-05-04 01:33:00,857 | INFO     | [job] queue monitor thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:33:04,722 | INFO     | [data] queue_monitor thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:33:08,290 | INFO     | job.realtimelogging is not enabled
[2026-05-04 03:33:54] 2026-05-04 01:33:09,295 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-04 03:33:54] 2026-05-04 01:33:27,417 | INFO     | PID=33894 has CPU usage=6.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-04 03:33:54] 2026-05-04 01:33:27,417 | INFO     | .. there are 13 such processes running
[2026-05-04 03:33:54] 2026-05-04 01:33:27,419 | INFO     | found 0 job(s) in 20 queues
[2026-05-04 03:33:54] 2026-05-04 01:33:27,419 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-04 03:33:54] 2026-05-04 01:33:27,419 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-04 03:33:54] 2026-05-04 01:33:48,048 | INFO     | [monitor] cgroup control has ended
[2026-05-04 03:33:54] 2026-05-04 01:33:49,238 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22558444853056)>', '<ExcThread(monitor, started 22558209750784)>']
[2026-05-04 03:33:54] 2026-05-04 01:33:49,530 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-04 03:33:54] 2026-05-04 01:33:49,530 | INFO     | [monitor] control thread has ended
[2026-05-04 03:33:54] 2026-05-04 01:33:54,263 | INFO     | all workflow threads have been joined
[2026-05-04 03:33:54] 2026-05-04 01:33:54,263 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-04 03:33:54] 2026-05-04 01:33:54,264 | INFO     | traces error code: 0
[2026-05-04 03:33:54] 2026-05-04 01:33:54,264 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-04 03:33:54] 2026-05-04 01:33:54,460 [wrapper] ==== pilot stdout END ====
[2026-05-04 03:33:54] 2026-05-04 01:33:54,463 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-04 03:33:54] 2026-05-04 01:33:54,466 [wrapper] pilotpid: 33894
[2026-05-04 03:33:54] 2026-05-04 01:33:54,469 [wrapper] Pilot exit status: 0
[2026-05-04 03:33:54] 2026-05-04 01:33:54,482 [wrapper] pandaids: 7127241524
[2026-05-04 03:33:54] 2026-05-04 01:33:54,558 [wrapper] cleanup supervisor_pilot  277562 33895
[2026-05-04 03:33:54] 2026-05-04 01:33:54,564 [wrapper] Test setup, not cleaning
[2026-05-04 03:33:54] 2026-05-04 01:33:54,567 [wrapper] apfmon messages muted
[2026-05-04 03:33:54] 2026-05-04 01:33:54,569 [wrapper] ==== wrapper stdout END ====
[2026-05-04 03:33:54] 2026-05-04 01:33:54,571 [wrapper] ==== wrapper stderr END ====
[2026-05-04 03:33:54]  *** Error codes and diagnostics ***
[2026-05-04 03:33:54]     "exeErrorCode": 0,
[2026-05-04 03:33:54]     "pilotErrorCode": 0,
[2026-05-04 03:33:54]  *** Listing of results directory ***
[2026-05-04 03:33:54] total 411096
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc    683926 May  3 05:02 pilot3.tar.gz
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc      5631 May  3 05:41 queuedata.json
[2026-05-04 03:33:54] -rwx------. 1 boinc boinc     36322 May  3 05:44 runpilot2-wrapper.sh
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc       100 May  4 00:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-04 03:33:54] -rwxr-xr-x. 1 boinc boinc      7986 May  4 00:28 run_atlas
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc       105 May  4 00:28 job.xml
[2026-05-04 03:33:54] -rw-r--r--. 2 boinc boinc 242567589 May  4 00:28 EVNT.50010725._000081.pool.root.1
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc      6482 May  4 00:28 init_data.xml
[2026-05-04 03:33:54] -rw-r--r--. 2 boinc boinc     15667 May  4 00:28 start_atlas.sh
[2026-05-04 03:33:54] drwxrwx--x. 2 boinc boinc      4096 May  4 00:28 shared
[2026-05-04 03:33:54] -rw-r--r--. 2 boinc boinc    697414 May  4 00:28 input.tar.gz
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc         0 May  4 00:28 boinc_lockfile
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc      2573 May  4 00:28 pandaJob.out
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc   1003017 May  4 00:29 agis_schedconf.cvmfs.json
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc       452 May  4 00:29 workernode_map.json
[2026-05-04 03:33:54] drwx------. 5 boinc boinc      4096 May  4 00:29 pilot3
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc 171631261 May  4 03:32 HITS.50010727._001592.pool.root.1
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc       488 May  4 03:32 boinc_task_state.xml
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc      1033 May  4 03:32 memory_monitor_summary.json
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc   1508687 May  4 03:32 agis_ddmendpoints.agis.ALL.json
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc    290455 May  4 03:32 log.50010727._001592.job.log.tgz.1
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc      6420 May  4 03:32 heartbeat_new.json
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc      6311 May  4 03:32 heartbeat.json
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc        95 May  4 03:33 pilot_heartbeat.json
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc      8192 May  4 03:33 boinc_mmap_file
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc        28 May  4 03:33 wrapper_checkpoint.txt
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc      4902 May  4 03:33 pilotlog.txt
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc   1022535 May  4 03:33 log.50010727._001592.job.log.1
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc       357 May  4 03:33 output.list
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc       410 May  4 03:33 runtime_log
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc   1331200 May  4 03:33 result.tar.gz
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc      8828 May  4 03:33 runtime_log.err
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc       664 May  4 03:33 c4888ba80966.diag
[2026-05-04 03:33:54] -rw-r--r--. 1 boinc boinc     21049 May  4 03:33 stderr.txt
[2026-05-04 03:33:54] HITS file was successfully produced:
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc 171631261 May  4 03:32 shared/HITS.pool.root.1
[2026-05-04 03:33:54]  *** Contents of shared directory: ***
[2026-05-04 03:33:54] total 406504
[2026-05-04 03:33:54] -rw-r--r--. 2 boinc boinc 242567589 May  4 00:28 ATLAS.root_0
[2026-05-04 03:33:54] -rw-r--r--. 2 boinc boinc     15667 May  4 00:28 start_atlas.sh
[2026-05-04 03:33:54] -rw-r--r--. 2 boinc boinc    697414 May  4 00:28 input.tar.gz
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc 171631261 May  4 03:32 HITS.pool.root.1
[2026-05-04 03:33:54] -rw-------. 1 boinc boinc   1331200 May  4 03:33 result.tar.gz
03:33:55 (30009): run_atlas exited; CPU time 39389.007810
03:33:55 (30009): called boinc_finish(0)

</stderr_txt>
]]>

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