Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
06:38:03 (3610902): wrapper (7.7.26015): starting
06:38:03 (3610902): wrapper: running run_atlas (--nthreads 8)
[2026-05-02 06:38:03] Arguments: --nthreads 8
[2026-05-02 06:38:03] Threads: 8
[2026-05-02 06:38:03] Checking for CVMFS
[2026-05-02 06:38:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-02 06:38:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-02 06:38:03] Running cvmfs_config stat atlas.cern.ch
[2026-05-02 06:38:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-02 06:38:04] 2.13.3.0 19353 2673 126816 159128 3 743 32068861 40960000 47336 16776704 0 50328115 99.821 22702420 38594 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-05-02 06:38:04] CVMFS is ok
[2026-05-02 06:38:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-02 06:38:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-02 06:38:04] Further information can be found at the LHC@home message board.
[2026-05-02 06:38:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 06:38:04] Checking for apptainer binary...
[2026-05-02 06:38:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-02 06:38:04] Running /usr/bin/apptainer --version
[2026-05-02 06:38:04] apptainer version 1.4.5-3.el9
[2026-05-02 06:38:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 06:38:05] c8-6-10.aglt2.org
[2026-05-02 06:38:05] apptainer works
[2026-05-02 06:38:05] Set ATHENA_PROC_NUMBER=8
[2026-05-02 06:38:05] Set ATHENA_CORE_NUMBER=8
[2026-05-02 06:38:05] Starting ATLAS job with PandaID=7126222969
[2026-05-02 06:38:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 07:55:21]  *** The last 200 lines of the pilot log: ***
[2026-05-02 07:55:21]  status=None
[2026-05-02 07:55:21]  status_code=0
[2026-05-02 07:55:21]  storage_token=
[2026-05-02 07:55:21]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-7126222969/log.49718416._022660.job.log.tgz.1
[2026-05-02 07:55:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/dd/log.49718416._022660.job.log.tgz.1
[2026-05-02 07:55:21]  workdir=None
[2026-05-02 07:55:21] ]
[2026-05-02 07:55:21] 2026-05-02 11:54:43,871 | INFO     | transferring file log.49718416._022660.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-7126222969/log.49718416._022660.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-05-02 07:55:21] 2026-05-02 11:54:43,872 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-7126222969/log.49718416._022660.job.log.tgz.1 /tmp/boinchome/slots/2/log.49718416._022660.job
[2026-05-02 07:55:21] 2026-05-02 11:54:43,931 | INFO     | adding to output.list: log.49718416._022660.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/dd/log.49718416._022660.job.log.tg
[2026-05-02 07:55:21] 2026-05-02 11:54:43,932 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-02 07:55:21] 2026-05-02 11:54:43,932 | INFO     | summary of transferred files:
[2026-05-02 07:55:21] 2026-05-02 11:54:43,932 | INFO     |  -- lfn=log.49718416._022660.job.log.tgz.1, status_code=0, status=transferred
[2026-05-02 07:55:21] 2026-05-02 11:54:43,932 | INFO     | stage-out finished correctly
[2026-05-02 07:55:21] 2026-05-02 11:54:45,894 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-02 07:55:21] 2026-05-02 11:54:46,776 | WARNING  | process 3747628 can no longer be monitored (due to stat problems) - aborting
[2026-05-02 07:55:21] 2026-05-02 11:54:46,792 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7126222969/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 07:55:21] 2026-05-02 11:54:46,793 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3940000 B
[2026-05-02 07:55:21] 2026-05-02 11:54:46,793 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15600 B
[2026-05-02 07:55:21] 2026-05-02 11:54:46,793 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-05-02 07:55:21] 2026-05-02 11:54:46,878 | INFO     | sufficient remaining disk space (170313908224 B)
[2026-05-02 07:55:21] 2026-05-02 11:54:46,878 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-05-02 07:55:21] 2026-05-02 11:54:46,880 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-7126222969: 4237692 B (within 5033164800 B limit)
[2026-05-02 07:55:21] 2026-05-02 11:54:46,880 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-7126222969/HITS.49718416._022660.pool.root.1 does not exist (skip from workdir size calculation)
[2026-05-02 07:55:21] 2026-05-02 11:54:46,880 | INFO     | total size of present files: 0 B (workdir size: 4237692 B)
[2026-05-02 07:55:21] 2026-05-02 11:54:46,880 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-7126222969/HITS.49718416._022660.pool.root.1 since it does not exist
[2026-05-02 07:55:21] 2026-05-02 11:54:47,125 | INFO     | job 7126222969 has state=finished
[2026-05-02 07:55:21] 2026-05-02 11:54:47,125 | INFO     | preparing for final server update for job 7126222969 in state='finished'
[2026-05-02 07:55:21] 2026-05-02 11:54:47,125 | INFO     | reading metadata from: /tmp/boinchome/slots/2/PanDA_Pilot-7126222969/jobReport.json
[2026-05-02 07:55:21] 2026-05-02 11:54:47,127 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/2/workernode_map.json
[2026-05-02 07:55:21] 2026-05-02 11:54:47,127 | INFO     | this job has now completed (state=finished)
[2026-05-02 07:55:21] 2026-05-02 11:54:47,127 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-02 07:55:21] 2026-05-02 11:54:47,127 | INFO     | log transfer has been attempted: DONE
[2026-05-02 07:55:21] 2026-05-02 11:54:47,127 | INFO     | job 7126222969 has finished - writing final server update
[2026-05-02 07:55:21] 2026-05-02 11:54:47,127 | INFO     | total number of processed events: 400 (read)
[2026-05-02 07:55:21] 2026-05-02 11:54:47,145 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7126222969/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 07:55:21] 2026-05-02 11:54:47,146 | INFO     | extracted standard info from prmon json
[2026-05-02 07:55:21] 2026-05-02 11:54:47,146 | INFO     | extracted standard memory fields from prmon json
[2026-05-02 07:55:21] 2026-05-02 11:54:47,146 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-02 07:55:21] 2026-05-02 11:54:47,146 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-02 07:55:21] 2026-05-02 11:54:47,147 | INFO     | fitting pss+swap vs Time
[2026-05-02 07:55:21] 2026-05-02 11:54:47,147 | INFO     | sum of square deviations: 85137578.98461549
[2026-05-02 07:55:21] 2026-05-02 11:54:47,147 | INFO     | sum of deviations: -4228952062.1076922
[2026-05-02 07:55:21] 2026-05-02 11:54:47,147 | INFO     | mean x (centered): 0.0
[2026-05-02 07:55:21] 2026-05-02 11:54:47,147 | INFO     | mean y: 2639735.107692308
[2026-05-02 07:55:21] 2026-05-02 11:54:47,147 | INFO     | intersect: 2639735.107692308
[2026-05-02 07:55:21] 2026-05-02 11:54:47,147 | INFO     | chi2: 0.04058482229404626
[2026-05-02 07:55:21] 2026-05-02 11:54:47,147 | INFO     | current memory leak: -49.67 B/s (using 65 data points, chi2=0.04)
[2026-05-02 07:55:21] 2026-05-02 11:54:47,147 | INFO     | could have reported an average CPU frequency of 3799 MHz (6 samples)
[2026-05-02 07:55:21] 2026-05-02 11:54:47,148 | INFO     | ..............................
[2026-05-02 07:55:21] 2026-05-02 11:54:47,148 | INFO     | . Timing measurements:
[2026-05-02 07:55:21] 2026-05-02 11:54:47,148 | INFO     | . get job = 0 s
[2026-05-02 07:55:21] 2026-05-02 11:54:47,148 | INFO     | . initial setup = 39 s
[2026-05-02 07:55:21] 2026-05-02 11:54:47,148 | INFO     | . payload setup = 79 s
[2026-05-02 07:55:21] 2026-05-02 11:54:47,148 | INFO     | . stage-in = 0 s
[2026-05-02 07:55:21] 2026-05-02 11:54:47,148 | INFO     | . payload execution = 4394 s
[2026-05-02 07:55:21] 2026-05-02 11:54:47,148 | INFO     | . stage-out = 1 s
[2026-05-02 07:55:21] 2026-05-02 11:54:47,148 | INFO     | . log creation = 0 s
[2026-05-02 07:55:21] 2026-05-02 11:54:47,148 | INFO     | ..............................
[2026-05-02 07:55:21] 2026-05-02 11:54:47,248 | INFO     | 
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | job summary report
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | --------------------------------------------------
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | PanDA job id: 7126222969
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | task id: 49718416
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | errors: (none)
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | pilot state: finished 
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | transexitcode: 0
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | exeerrorcode: 0
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | exeerrordiag: 
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | exitcode: 0
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | exitmsg: OK
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | cpuconsumptiontime: 23431 s
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | nevents: 400
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | neventsw: 0
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | pid: 3747628
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | pgrp: 3747628
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | corecount: 8
[2026-05-02 07:55:21] 2026-05-02 11:54:47,249 | INFO     | event service: False
[2026-05-02 07:55:21] 2026-05-02 11:54:47,250 | INFO     | sizes: {0: 2275275, 1: 2275359, 2: 2277188, 4478: 2303301, 4479: 2303300, 4480: 2312354, 4483: 2312538, 4484: 2312760}
[2026-05-02 07:55:21] 2026-05-02 11:54:47,250 | INFO     | --------------------------------------------------
[2026-05-02 07:55:21] 2026-05-02 11:54:47,250 | INFO     | 
[2026-05-02 07:55:21] 2026-05-02 11:54:47,250 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,288 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,289 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,289 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,289 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,289 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,289 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-02 07:55:21] 2026-05-02 11:54:47,289 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,289 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-02 07:55:21] 2026-05-02 11:54:47,289 | INFO     | job 7126222969 has completed (purged errors)
[2026-05-02 07:55:21] 2026-05-02 11:54:47,289 | INFO     | overall cleanup function is called
[2026-05-02 07:55:21] 2026-05-02 11:54:47,881 | INFO     | number of running child processes to parent process 3747628: 1
[2026-05-02 07:55:21] 2026-05-02 11:54:47,881 | INFO     | maximum number of monitored processes: 6
[2026-05-02 07:55:21] 2026-05-02 11:54:47,881 | INFO     | aborting job monitoring since job object (job id=7126222969) has expired
[2026-05-02 07:55:21] 2026-05-02 11:54:48,305 | INFO     | --- collectZombieJob: --- 10, [3747628]
[2026-05-02 07:55:21] 2026-05-02 11:54:48,305 | INFO     | zombie collector waiting for pid 3747628
[2026-05-02 07:55:21] 2026-05-02 11:54:48,305 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 07:55:21] 2026-05-02 11:54:48,305 | INFO     | collected zombie processes
[2026-05-02 07:55:21] 2026-05-02 11:54:48,305 | INFO     | will attempt to kill all subprocesses of pid=3747628
[2026-05-02 07:55:21] 2026-05-02 11:54:49,132 | INFO     | process IDs to be killed: [3747628] (in reverse order)
[2026-05-02 07:55:21] 2026-05-02 11:54:49,374 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 07:55:21] 2026-05-02 11:54:49,374 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 07:55:21] 2026-05-02 11:54:49,406 | INFO     | did not find any defunct processes belonging to 3747628
[2026-05-02 07:55:21] 2026-05-02 11:54:49,438 | INFO     | did not find any defunct processes belonging to 3747628
[2026-05-02 07:55:21] 2026-05-02 11:54:49,441 | INFO     | Ready for new job
[2026-05-02 07:55:21] 2026-05-02 11:54:49,442 | INFO     | ***************************************
[2026-05-02 07:55:21] 2026-05-02 11:54:49,442 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 07:55:21] 2026-05-02 11:54:49,442 | INFO     | ***************************************
[2026-05-02 07:55:21] 2026-05-02 11:54:49,442 | INFO     | 
[2026-05-02 07:55:21] 2026-05-02 11:54:49,447 | INFO     | architecture information:
[2026-05-02 07:55:21] 2026-05-02 11:54:49,447 | INFO     | executing command: cat /etc/os-release
[2026-05-02 07:55:21] 2026-05-02 11:54:49,485 | INFO     | cat /etc/os-release:
[2026-05-02 07:55:21] NAME="CentOS Linux"
[2026-05-02 07:55:21] VERSION="7 (Core)"
[2026-05-02 07:55:21] ID="centos"
[2026-05-02 07:55:21] ID_LIKE="rhel fedora"
[2026-05-02 07:55:21] VERSION_ID="7"
[2026-05-02 07:55:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 07:55:21] ANSI_COLOR="0;31"
[2026-05-02 07:55:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 07:55:21] HOME_URL="https://www.centos.org/"
[2026-05-02 07:55:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 07:55:21] 
[2026-05-02 07:55:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 07:55:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 07:55:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 07:55:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 07:55:21] 
[2026-05-02 07:55:21] 2026-05-02 11:54:49,485 | INFO     | ***************************************
[2026-05-02 07:55:21] 2026-05-02 11:54:49,993 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-05-02 07:55:21] 2026-05-02 11:54:50,031 | INFO     | sufficient remaining disk space (170317053952 B)
[2026-05-02 07:55:21] 2026-05-02 11:54:50,031 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 07:55:21] 2026-05-02 11:54:50,031 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 07:55:21] 2026-05-02 11:54:50,031 | INFO     | update_server=False
[2026-05-02 07:55:21] 2026-05-02 11:54:50,031 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 07:55:21] 2026-05-02 11:54:50,033 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 07:55:21] 2026-05-02 11:54:50,107 | INFO     | all data control threads have been joined
[2026-05-02 07:55:21] 2026-05-02 11:54:50,187 | INFO     | all job control threads have been joined
[2026-05-02 07:55:21] 2026-05-02 11:54:50,396 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-02 07:55:21] 2026-05-02 11:54:50,396 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-02 07:55:21] 2026-05-02 11:54:50,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 07:55:21] 2026-05-02 11:54:50,396 | INFO     | will abort loop
[2026-05-02 07:55:21] 2026-05-02 11:54:50,555 | INFO     | all payload control threads have been joined
[2026-05-02 07:55:21] 2026-05-02 11:54:51,044 | INFO     | [job] retrieve thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:51,112 | INFO     | [data] control thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:51,153 | INFO     | [data] copytool_in thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:51,194 | INFO     | [job] control thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:51,401 | INFO     | [job] job monitor thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:51,524 | INFO     | [payload] validate_post thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:51,561 | INFO     | [payload] control thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:51,731 | INFO     | [job] validate thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:51,998 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:52,046 | INFO     | [data] copytool_out thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:52,057 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:52,156 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:52,238 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 07:55:21] 2026-05-02 11:54:52,260 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 07:55:21] 2026-05-02 11:54:52,327 | INFO     | [payload] failed_post thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:53,266 | INFO     | [job] queue monitor thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:54:56,250 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:55:00,167 | INFO     | job.realtimelogging is not enabled
[2026-05-02 07:55:21] 2026-05-02 11:55:01,183 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 07:55:21] 2026-05-02 11:55:08,107 | INFO     | [monitor] cgroup control has ended
[2026-05-02 07:55:21] 2026-05-02 11:55:10,051 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139994196576064)>', '<ExcThread(monitor, started 139993804674816)>']
[2026-05-02 07:55:21] 2026-05-02 11:55:15,076 | INFO     | all workflow threads have been joined
[2026-05-02 07:55:21] 2026-05-02 11:55:15,076 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 07:55:21] 2026-05-02 11:55:15,076 | INFO     | traces error code: 0
[2026-05-02 07:55:21] 2026-05-02 11:55:15,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 07:55:21] 2026-05-02 11:55:20,563 | INFO     | PID=3659924 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-02 07:55:21] 2026-05-02 11:55:20,564 | INFO     | .. there are 55 such processes running
[2026-05-02 07:55:21] 2026-05-02 11:55:20,565 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 07:55:21] 2026-05-02 11:55:20,565 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 07:55:21] 2026-05-02 11:55:20,565 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 07:55:21] 2026-05-02 11:55:20,565 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 07:55:21] 2026-05-02 11:55:20,565 | CRITICAL | thread 'MainThread' is not alive
[2026-05-02 07:55:21] 2026-05-02 11:55:20,565 | INFO     | [monitor] control thread has ended
[2026-05-02 07:55:21] 2026-05-02 11:55:20,873 [wrapper] ==== pilot stdout END ====
[2026-05-02 07:55:21] 2026-05-02 11:55:20,877 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 07:55:21] 2026-05-02 11:55:20,883 [wrapper] pilotpid: 3659924
[2026-05-02 07:55:21] 2026-05-02 11:55:20,886 [wrapper] Pilot exit status: 0
[2026-05-02 07:55:21] 2026-05-02 11:55:20,914 [wrapper] pandaids: 7126222969
[2026-05-02 07:55:21] 2026-05-02 11:55:21,114 [wrapper] cleanup supervisor_pilot 1268097 3659925
[2026-05-02 07:55:21] 2026-05-02 11:55:21,124 [wrapper] Test setup, not cleaning
[2026-05-02 07:55:21] 2026-05-02 11:55:21,127 [wrapper] apfmon messages muted
[2026-05-02 07:55:21] 2026-05-02 11:55:21,139 [wrapper] ==== wrapper stdout END ====
[2026-05-02 07:55:21] 2026-05-02 11:55:21,143 [wrapper] ==== wrapper stderr END ====
[2026-05-02 07:55:21]  *** Error codes and diagnostics ***
[2026-05-02 07:55:21]     "exeErrorCode": 0,
[2026-05-02 07:55:21]     "pilotErrorCode": 0,
[2026-05-02 07:55:21]  *** Listing of results directory ***
[2026-05-02 07:55:21] total 637688
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas    683926 May  2 06:29 pilot3.tar.gz
[2026-05-02 07:55:21] -rwx------. 1 boincer umatlas     36322 May  2 06:36 runpilot2-wrapper.sh
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas      5631 May  2 06:36 queuedata.json
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas       100 May  2 06:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 07:55:21] -rwxr-xr-x. 1 boincer umatlas      7986 May  2 06:38 run_atlas
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas       105 May  2 06:38 job.xml
[2026-05-02 07:55:21] -rw-r--r--. 2 boincer umatlas 446347548 May  2 06:38 EVNT.46373187._000214.pool.root.1
[2026-05-02 07:55:21] -rw-r--r--. 2 boincer umatlas     15667 May  2 06:38 start_atlas.sh
[2026-05-02 07:55:21] drwxrwx--x. 2 boincer umatlas      4096 May  2 06:38 shared
[2026-05-02 07:55:21] -rw-r--r--. 2 boincer umatlas    697425 May  2 06:38 input.tar.gz
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas         0 May  2 06:38 boinc_lockfile
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas      2598 May  2 06:38 pandaJob.out
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas        57 May  2 06:38 setup.sh.local
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas   1002992 May  2 06:39 agis_schedconf.cvmfs.json
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas   1508687 May  2 06:39 agis_ddmendpoints.agis.ALL.json
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas       427 May  2 06:39 workernode_map.json
[2026-05-02 07:55:21] drwx------. 5 boincer umatlas      4096 May  2 06:40 pilot3
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas      7099 May  2 07:45 init_data.xml
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas 201009616 May  2 07:54 HITS.49718416._022660.pool.root.1
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas       488 May  2 07:54 boinc_task_state.xml
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas      1036 May  2 07:54 memory_monitor_summary.json
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas    321171 May  2 07:54 log.49718416._022660.job.log.tgz.1
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas      6361 May  2 07:54 heartbeat_new.json
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas      6252 May  2 07:54 heartbeat.json
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas      8192 May  2 07:55 boinc_mmap_file
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas        27 May  2 07:55 wrapper_checkpoint.txt
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas        95 May  2 07:55 pilot_heartbeat.json
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas       893 May  2 07:55 pilotlog.txt
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas    429240 May  2 07:55 log.49718416._022660.job.log.1
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas       357 May  2 07:55 output.list
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas       410 May  2 07:55 runtime_log
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas    768000 May  2 07:55 result.tar.gz
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas      8959 May  2 07:55 runtime_log.err
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas       650 May  2 07:55 d3c47ff9dde4.diag
[2026-05-02 07:55:21] -rw-r--r--. 1 boincer umatlas     22200 May  2 07:55 stderr.txt
[2026-05-02 07:55:21] HITS file was successfully produced:
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas 201009616 May  2 07:54 shared/HITS.pool.root.1
[2026-05-02 07:55:21]  *** Contents of shared directory: ***
[2026-05-02 07:55:21] total 633644
[2026-05-02 07:55:21] -rw-r--r--. 2 boincer umatlas 446347548 May  2 06:38 ATLAS.root_0
[2026-05-02 07:55:21] -rw-r--r--. 2 boincer umatlas     15667 May  2 06:38 start_atlas.sh
[2026-05-02 07:55:21] -rw-r--r--. 2 boincer umatlas    697425 May  2 06:38 input.tar.gz
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas 201009616 May  2 07:54 HITS.pool.root.1
[2026-05-02 07:55:21] -rw-------. 1 boincer umatlas    768000 May  2 07:55 result.tar.gz
07:55:22 (3610902): run_atlas exited; CPU time 23587.489858
07:55:22 (3610902): called boinc_finish(0)

</stderr_txt>
]]>

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