Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:25:13 (1291485): wrapper (7.7.26015): starting
14:25:13 (1291485): wrapper: running run_atlas (--nthreads 4)
[2026-05-03 14:25:14] Arguments: --nthreads 4
[2026-05-03 14:25:14] Threads: 4
[2026-05-03 14:25:14] Checking for CVMFS
[2026-05-03 14:25:14] No cvmfs_config command found, will try listing directly
[2026-05-03 14:25:14] CVMFS is ok
[2026-05-03 14:25:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 14:25:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 14:25:14] Further information can be found at the LHC@home message board.
[2026-05-03 14:25:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 14:25:14] Checking for apptainer binary...
[2026-05-03 14:25:14] which: no apptainer in ((null))
[2026-05-03 14:25:14] apptainer is not installed, using version from CVMFS
[2026-05-03 14:25:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 14:25:14] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot28/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2026-05-03 14:25:14] apptainer works
[2026-05-03 14:25:14] Set ATHENA_PROC_NUMBER=4
[2026-05-03 14:25:14] Set ATHENA_CORE_NUMBER=4
[2026-05-03 14:25:14] Starting ATLAS job with PandaID=7123453325
[2026-05-03 14:25:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot28/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-03 17:32:56]  *** The last 200 lines of the pilot log: ***
[2026-05-03 17:32:56] 2026-05-03 15:32:16,009 | INFO     | extracted standard memory fields from prmon json
[2026-05-03 17:32:56] 2026-05-03 15:32:16,010 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-03 17:32:56] 2026-05-03 15:32:16,010 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-03 17:32:56] 2026-05-03 15:32:16,013 | INFO     | fitting pss+swap vs Time
[2026-05-03 17:32:56] 2026-05-03 15:32:16,014 | INFO     | sum of square deviations: 1931608310.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,015 | INFO     | sum of deviations: -10718228870.000002
[2026-05-03 17:32:56] 2026-05-03 15:32:16,015 | INFO     | mean x (centered): 0.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,015 | INFO     | mean y: 2330847.9239130435
[2026-05-03 17:32:56] 2026-05-03 15:32:16,015 | INFO     | intersect: 2330847.9239130435
[2026-05-03 17:32:56] 2026-05-03 15:32:16,015 | INFO     | chi2: 2.1497048984372724
[2026-05-03 17:32:56] 2026-05-03 15:32:16,016 | INFO     | sum of square deviations: 1778377530.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,017 | INFO     | sum of deviations: 1083038834.9999971
[2026-05-03 17:32:56] 2026-05-03 15:32:16,017 | INFO     | mean x (centered): 0.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,017 | INFO     | mean y: 2342342.620111732
[2026-05-03 17:32:56] 2026-05-03 15:32:16,017 | INFO     | intersect: 2342342.620111732
[2026-05-03 17:32:56] 2026-05-03 15:32:16,017 | INFO     | chi2: 1.3645163487641683
[2026-05-03 17:32:56] 2026-05-03 15:32:16,017 | INFO     | current chi2=1.3645163487641683 (change=36.525411010780914 %)
[2026-05-03 17:32:56] 2026-05-03 15:32:16,018 | INFO     | sum of square deviations: 1633472487.5
[2026-05-03 17:32:56] 2026-05-03 15:32:16,019 | INFO     | sum of deviations: 1254539206.4999983
[2026-05-03 17:32:56] 2026-05-03 15:32:16,019 | INFO     | mean x (centered): 0.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,019 | INFO     | mean y: 2342523.1551724137
[2026-05-03 17:32:56] 2026-05-03 15:32:16,019 | INFO     | intersect: 2342523.1551724137
[2026-05-03 17:32:56] 2026-05-03 15:32:16,020 | INFO     | chi2: 1.3650524135625848
[2026-05-03 17:32:56] 2026-05-03 15:32:16,020 | INFO     | current chi2=1.3650524135625848 (change=-0.039286066370843566 %)
[2026-05-03 17:32:56] 2026-05-03 15:32:16,020 | INFO     | right removable region: 173
[2026-05-03 17:32:56] 2026-05-03 15:32:16,020 | INFO     | sum of square deviations: 1778377530.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,021 | INFO     | sum of deviations: -32974211118.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,021 | INFO     | mean x (centered): 0.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,021 | INFO     | mean y: 2352658.782122905
[2026-05-03 17:32:56] 2026-05-03 15:32:16,022 | INFO     | intersect: 2352658.782122905
[2026-05-03 17:32:56] 2026-05-03 15:32:16,022 | INFO     | chi2: 0.8492032710693188
[2026-05-03 17:32:56] 2026-05-03 15:32:16,022 | INFO     | current chi2=0.8492032710693188 (change=60.49675135937742 %)
[2026-05-03 17:32:56] 2026-05-03 15:32:16,022 | INFO     | sum of square deviations: 1633472487.5
[2026-05-03 17:32:56] 2026-05-03 15:32:16,023 | INFO     | sum of deviations: -30725359101.499996
[2026-05-03 17:32:56] 2026-05-03 15:32:16,023 | INFO     | mean x (centered): 0.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,023 | INFO     | mean y: 2350295.4770114943
[2026-05-03 17:32:56] 2026-05-03 15:32:16,024 | INFO     | intersect: 2350295.4770114943
[2026-05-03 17:32:56] 2026-05-03 15:32:16,024 | INFO     | chi2: 0.8492992992904126
[2026-05-03 17:32:56] 2026-05-03 15:32:16,024 | INFO     | current chi2=0.8492992992904126 (change=-0.011308037117292448 %)
[2026-05-03 17:32:56] 2026-05-03 15:32:16,024 | INFO     | left removable region: 10
[2026-05-03 17:32:56] 2026-05-03 15:32:16,024 | INFO     | sum of square deviations: 1342841922.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,025 | INFO     | sum of deviations: -18201051107.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,025 | INFO     | mean x (centered): 0.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,025 | INFO     | mean y: 2364039.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,025 | INFO     | intersect: 2364039.0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,026 | INFO     | chi2: 0.03826778350641004
[2026-05-03 17:32:56] 2026-05-03 15:32:16,026 | INFO     | current memory leak: -13.55 B/s (using 163 data points, chi2=0.04)
[2026-05-03 17:32:56] 2026-05-03 15:32:16,026 | INFO     | could have reported an average CPU frequency of 2560 MHz (10 samples)
[2026-05-03 17:32:56] 2026-05-03 15:32:16,027 | INFO     | ..............................
[2026-05-03 17:32:56] 2026-05-03 15:32:16,027 | INFO     | . Timing measurements:
[2026-05-03 17:32:56] 2026-05-03 15:32:16,027 | INFO     | . get job = 0 s
[2026-05-03 17:32:56] 2026-05-03 15:32:16,027 | INFO     | . initial setup = 6 s
[2026-05-03 17:32:56] 2026-05-03 15:32:16,027 | INFO     | . payload setup = 10 s
[2026-05-03 17:32:56] 2026-05-03 15:32:16,027 | INFO     | . stage-in = 0 s
[2026-05-03 17:32:56] 2026-05-03 15:32:16,027 | INFO     | . payload execution = 11175 s
[2026-05-03 17:32:56] 2026-05-03 15:32:16,027 | INFO     | . stage-out = 1 s
[2026-05-03 17:32:56] 2026-05-03 15:32:16,027 | INFO     | . log creation = 0 s
[2026-05-03 17:32:56] 2026-05-03 15:32:16,027 | INFO     | ..............................
[2026-05-03 17:32:56] 2026-05-03 15:32:16,118 | INFO     | 
[2026-05-03 17:32:56] 2026-05-03 15:32:16,119 | INFO     | job summary report
[2026-05-03 17:32:56] 2026-05-03 15:32:16,119 | INFO     | --------------------------------------------------
[2026-05-03 17:32:56] 2026-05-03 15:32:16,119 | INFO     | PanDA job id: 7123453325
[2026-05-03 17:32:56] 2026-05-03 15:32:16,119 | INFO     | task id: 49263200
[2026-05-03 17:32:56] 2026-05-03 15:32:16,119 | INFO     | errors: (none)
[2026-05-03 17:32:56] 2026-05-03 15:32:16,119 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-03 17:32:56] 2026-05-03 15:32:16,119 | INFO     | pilot state: finished 
[2026-05-03 17:32:56] 2026-05-03 15:32:16,119 | INFO     | transexitcode: 0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,119 | INFO     | exeerrorcode: 0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,119 | INFO     | exeerrordiag: 
[2026-05-03 17:32:56] 2026-05-03 15:32:16,119 | INFO     | exitcode: 0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,119 | INFO     | exitmsg: OK
[2026-05-03 17:32:56] 2026-05-03 15:32:16,120 | INFO     | cpuconsumptiontime: 43219 s
[2026-05-03 17:32:56] 2026-05-03 15:32:16,120 | INFO     | nevents: 400
[2026-05-03 17:32:56] 2026-05-03 15:32:16,120 | INFO     | neventsw: 0
[2026-05-03 17:32:56] 2026-05-03 15:32:16,120 | INFO     | pid: 1308884
[2026-05-03 17:32:56] 2026-05-03 15:32:16,120 | INFO     | pgrp: 1308884
[2026-05-03 17:32:56] 2026-05-03 15:32:16,120 | INFO     | corecount: 4
[2026-05-03 17:32:56] 2026-05-03 15:32:16,120 | INFO     | event service: False
[2026-05-03 17:32:56] 2026-05-03 15:32:16,120 | INFO     | sizes: {0: 2274701, 1: 2277198, 12: 2277198, 11190: 2306393, 11192: 2315607}
[2026-05-03 17:32:56] 2026-05-03 15:32:16,120 | INFO     | --------------------------------------------------
[2026-05-03 17:32:56] 2026-05-03 15:32:16,120 | INFO     | 
[2026-05-03 17:32:56] 2026-05-03 15:32:16,120 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot28/slots/2
[2026-05-03 17:32:56] 2026-05-03 15:32:16,145 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,145 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,145 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,145 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,146 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,146 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,146 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,146 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,146 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,146 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,146 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,146 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,147 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,147 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-03 17:32:56] 2026-05-03 15:32:16,147 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,147 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-03 17:32:56] 2026-05-03 15:32:16,147 | INFO     | job 7123453325 has completed (purged errors)
[2026-05-03 17:32:56] 2026-05-03 15:32:16,147 | INFO     | overall cleanup function is called
[2026-05-03 17:32:56] 2026-05-03 15:32:16,364 | INFO     | PID=1298189 has CPU usage=10.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-05-03 17:32:56] 2026-05-03 15:32:16,364 | INFO     | .. there are 11 such processes running
[2026-05-03 17:32:56] 2026-05-03 15:32:17,156 | INFO     | --- collectZombieJob: --- 10, [1308884]
[2026-05-03 17:32:56] 2026-05-03 15:32:17,157 | INFO     | zombie collector waiting for pid 1308884
[2026-05-03 17:32:56] 2026-05-03 15:32:17,157 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-03 17:32:56] 2026-05-03 15:32:17,157 | INFO     | collected zombie processes
[2026-05-03 17:32:56] 2026-05-03 15:32:17,157 | INFO     | will attempt to kill all subprocesses of pid=1308884
[2026-05-03 17:32:56] 2026-05-03 15:32:17,439 | INFO     | process IDs to be killed: [1308884] (in reverse order)
[2026-05-03 17:32:56] 2026-05-03 15:32:17,558 | WARNING  | found no corresponding commands to process id(s)
[2026-05-03 17:32:56] 2026-05-03 15:32:17,558 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-03 17:32:56] 2026-05-03 15:32:17,570 | INFO     | did not find any defunct processes belonging to 1308884
[2026-05-03 17:32:56] 2026-05-03 15:32:17,580 | INFO     | did not find any defunct processes belonging to 1308884
[2026-05-03 17:32:56] 2026-05-03 15:32:17,581 | INFO     | Ready for new job
[2026-05-03 17:32:56] 2026-05-03 15:32:17,583 | INFO     | ***************************************
[2026-05-03 17:32:56] 2026-05-03 15:32:17,583 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-03 17:32:56] 2026-05-03 15:32:17,583 | INFO     | ***************************************
[2026-05-03 17:32:56] 2026-05-03 15:32:17,583 | INFO     | 
[2026-05-03 17:32:56] 2026-05-03 15:32:17,587 | INFO     | architecture information:
[2026-05-03 17:32:56] 2026-05-03 15:32:17,587 | INFO     | executing command: cat /etc/os-release
[2026-05-03 17:32:56] 2026-05-03 15:32:17,602 | INFO     | cat /etc/os-release:
[2026-05-03 17:32:56] NAME="CentOS Linux"
[2026-05-03 17:32:56] VERSION="7 (Core)"
[2026-05-03 17:32:56] ID="centos"
[2026-05-03 17:32:56] ID_LIKE="rhel fedora"
[2026-05-03 17:32:56] VERSION_ID="7"
[2026-05-03 17:32:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-03 17:32:56] ANSI_COLOR="0;31"
[2026-05-03 17:32:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-03 17:32:56] HOME_URL="https://www.centos.org/"
[2026-05-03 17:32:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-03 17:32:56] 
[2026-05-03 17:32:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-03 17:32:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-03 17:32:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-03 17:32:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-03 17:32:56] 
[2026-05-03 17:32:56] 2026-05-03 15:32:17,602 | INFO     | ***************************************
[2026-05-03 17:32:56] 2026-05-03 15:32:18,105 | INFO     | executing command: df -mP /var/lib/boinc/var/slot28/slots/2
[2026-05-03 17:32:56] 2026-05-03 15:32:18,121 | INFO     | sufficient remaining disk space (58016661504 B)
[2026-05-03 17:32:56] 2026-05-03 15:32:18,121 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-03 17:32:56] 2026-05-03 15:32:18,122 | INFO     | current server update state: UPDATING_FINAL
[2026-05-03 17:32:56] 2026-05-03 15:32:18,122 | INFO     | update_server=False
[2026-05-03 17:32:56] 2026-05-03 15:32:18,122 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-03 17:32:56] 2026-05-03 15:32:18,122 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-03 17:32:56] 2026-05-03 15:32:18,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-03 17:32:56] 2026-05-03 15:32:18,126 | INFO     | all data control threads have been joined
[2026-05-03 17:32:56] 2026-05-03 15:32:18,431 | INFO     | job.realtimelogging is not enabled
[2026-05-03 17:32:56] 2026-05-03 15:32:18,903 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-03 17:32:56] 2026-05-03 15:32:18,928 | WARNING  | process 1308884 can no longer be monitored (due to stat problems) - aborting
[2026-05-03 17:32:56] 2026-05-03 15:32:19,126 | INFO     | [job] retrieve thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:19,127 | INFO     | [job] queue monitor thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:19,132 | INFO     | [data] control thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:19,216 | INFO     | using path: /var/lib/boinc/var/slot28/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 17:32:56] 2026-05-03 15:32:19,236 | INFO     | all payload control threads have been joined
[2026-05-03 17:32:56] 2026-05-03 15:32:19,300 | INFO     | [payload] execute_payloads thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:19,406 | INFO     | [data] copytool_in thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:19,436 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:19,527 | INFO     | number of running child processes to parent process 1308884: 1
[2026-05-03 17:32:56] 2026-05-03 15:32:19,527 | INFO     | maximum number of monitored processes: 6
[2026-05-03 17:32:56] 2026-05-03 15:32:19,527 | INFO     | aborting job monitoring since job object (job id=7123453325) has expired
[2026-05-03 17:32:56] 2026-05-03 15:32:19,528 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-03 17:32:56] 2026-05-03 15:32:19,528 | INFO     | will abort loop
[2026-05-03 17:32:56] 2026-05-03 15:32:19,619 | INFO     | [payload] validate_post thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:19,626 | INFO     | all job control threads have been joined
[2026-05-03 17:32:56] 2026-05-03 15:32:19,915 | INFO     | [payload] failed_post thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:20,030 | INFO     | [job] validate thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:20,162 | INFO     | [payload] validate_pre thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:20,213 | INFO     | [job] create_data_payload thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:20,241 | INFO     | [payload] control thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:20,532 | INFO     | [job] job monitor thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:20,631 | INFO     | [job] control thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:20,908 | INFO     | [data] copytool_out thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:22,127 | INFO     | [data] queue_monitor thread has finished
[2026-05-03 17:32:56] 2026-05-03 15:32:48,854 | INFO     | PID=1298189 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-03 17:32:56] 2026-05-03 15:32:48,855 | INFO     | .. there are 11 such processes running
[2026-05-03 17:32:56] 2026-05-03 15:32:48,856 | INFO     | found 0 job(s) in 20 queues
[2026-05-03 17:32:56] 2026-05-03 15:32:48,856 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-03 17:32:56] 2026-05-03 15:32:48,856 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-03 17:32:56] 2026-05-03 15:32:50,411 | INFO     | [monitor] cgroup control has ended
[2026-05-03 17:32:56] 2026-05-03 15:32:51,255 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22782352451392)>', '<ExcThread(monitor, started 22782045837056)>']
[2026-05-03 17:32:56] 2026-05-03 15:32:51,871 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-03 17:32:56] 2026-05-03 15:32:51,872 | INFO     | [monitor] control thread has ended
[2026-05-03 17:32:56] 2026-05-03 15:32:56,280 | INFO     | all workflow threads have been joined
[2026-05-03 17:32:56] 2026-05-03 15:32:56,280 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-03 17:32:56] 2026-05-03 15:32:56,281 | INFO     | traces error code: 0
[2026-05-03 17:32:56] 2026-05-03 15:32:56,281 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-03 17:32:56] 2026-05-03 15:32:56,428 [wrapper] ==== pilot stdout END ====
[2026-05-03 17:32:56] 2026-05-03 15:32:56,431 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-03 17:32:56] 2026-05-03 15:32:56,433 [wrapper] pilotpid: 1298189
[2026-05-03 17:32:56] 2026-05-03 15:32:56,436 [wrapper] Pilot exit status: 0
[2026-05-03 17:32:56] 2026-05-03 15:32:56,446 [wrapper] pandaids: 7123453325
[2026-05-03 17:32:56] 2026-05-03 15:32:56,518 [wrapper] cleanup supervisor_pilot 1525917 1298190
[2026-05-03 17:32:56] 2026-05-03 15:32:56,521 [wrapper] Test setup, not cleaning
[2026-05-03 17:32:56] 2026-05-03 15:32:56,524 [wrapper] apfmon messages muted
[2026-05-03 17:32:56] 2026-05-03 15:32:56,526 [wrapper] ==== wrapper stdout END ====
[2026-05-03 17:32:56] 2026-05-03 15:32:56,529 [wrapper] ==== wrapper stderr END ====
[2026-05-03 17:32:56]  *** Error codes and diagnostics ***
[2026-05-03 17:32:56]     "exeErrorCode": 0,
[2026-05-03 17:32:56]     "pilotErrorCode": 0,
[2026-05-03 17:32:56]  *** Listing of results directory ***
[2026-05-03 17:32:56] total 418040
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc    683926 May  2 06:06 pilot3.tar.gz
[2026-05-03 17:32:56] -rwx------. 1 boinc boinc     36322 May  2 06:06 runpilot2-wrapper.sh
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc      5631 May  2 06:07 queuedata.json
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc       100 May  3 14:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-03 17:32:56] -rwxr-xr-x. 1 boinc boinc      7986 May  3 14:25 run_atlas
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc       105 May  3 14:25 job.xml
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc      6483 May  3 14:25 init_data.xml
[2026-05-03 17:32:56] -rw-r--r--. 2 boinc boinc 224534200 May  3 14:25 EVNT.49263198._001938.pool.root.1
[2026-05-03 17:32:56] -rw-r--r--. 2 boinc boinc     15667 May  3 14:25 start_atlas.sh
[2026-05-03 17:32:56] drwxrwx--x. 2 boinc boinc      4096 May  3 14:25 shared
[2026-05-03 17:32:56] -rw-r--r--. 2 boinc boinc    697428 May  3 14:25 input.tar.gz
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc         0 May  3 14:25 boinc_lockfile
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc      2577 May  3 14:25 pandaJob.out
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc   1002976 May  3 14:25 agis_schedconf.cvmfs.json
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc       452 May  3 14:25 workernode_map.json
[2026-05-03 17:32:56] drwx------. 5 boinc boinc      4096 May  3 14:25 pilot3
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc 196666751 May  3 17:31 HITS.49263200._089047.pool.root.1
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc       487 May  3 17:32 boinc_task_state.xml
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc      1033 May  3 17:32 memory_monitor_summary.json
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc   1508687 May  3 17:32 agis_ddmendpoints.agis.ALL.json
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc    303806 May  3 17:32 log.49263200._089047.job.log.tgz.1
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc      6431 May  3 17:32 heartbeat_new.json
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc      6322 May  3 17:32 heartbeat.json
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc        27 May  3 17:32 wrapper_checkpoint.txt
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc      8192 May  3 17:32 boinc_mmap_file
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc        95 May  3 17:32 pilot_heartbeat.json
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc      5436 May  3 17:32 pilotlog.txt
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc   1064714 May  3 17:32 log.49263200._089047.job.log.1
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc       357 May  3 17:32 output.list
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc       410 May  3 17:32 runtime_log
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc   1382400 May  3 17:32 result.tar.gz
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc      8828 May  3 17:32 runtime_log.err
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc       665 May  3 17:32 785b09227f85.diag
[2026-05-03 17:32:56] -rw-r--r--. 1 boinc boinc     20849 May  3 17:32 stderr.txt
[2026-05-03 17:32:56] HITS file was successfully produced:
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc 196666751 May  3 17:31 shared/HITS.pool.root.1
[2026-05-03 17:32:56]  *** Contents of shared directory: ***
[2026-05-03 17:32:56] total 413392
[2026-05-03 17:32:56] -rw-r--r--. 2 boinc boinc 224534200 May  3 14:25 ATLAS.root_0
[2026-05-03 17:32:56] -rw-r--r--. 2 boinc boinc     15667 May  3 14:25 start_atlas.sh
[2026-05-03 17:32:56] -rw-r--r--. 2 boinc boinc    697428 May  3 14:25 input.tar.gz
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc 196666751 May  3 17:31 HITS.pool.root.1
[2026-05-03 17:32:56] -rw-------. 1 boinc boinc   1382400 May  3 17:32 result.tar.gz
17:32:57 (1291485): run_atlas exited; CPU time 43629.530575
17:32:57 (1291485): called boinc_finish(0)

</stderr_txt>
]]>

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