Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
13:37:41 (1047387): wrapper (7.7.26015): starting
13:37:41 (1047387): wrapper: running run_atlas (--nthreads 4)
[2026-05-02 13:37:41] Arguments: --nthreads 4
[2026-05-02 13:37:41] Threads: 4
[2026-05-02 13:37:41] Checking for CVMFS
[2026-05-02 13:37:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-02 13:37:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-02 13:37:44] Running cvmfs_config stat atlas.cern.ch
[2026-05-02 13:37:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-02 13:37:44] 2.13.3.0 425812 8761 51140 159140 0 54 4671229 6144000 6447 130560 0 22068332 99.997 339420 798 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch http://192.168.1.30:3128 1
[2026-05-02 13:37:44] CVMFS is ok
[2026-05-02 13:37:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 13:37:44] Checking for apptainer binary...
[2026-05-02 13:37:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-02 13:37:44] Running /usr/bin/apptainer --version
[2026-05-02 13:37:44] apptainer version 1.4.5
[2026-05-02 13:37:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 13:37:44] Starfish-Cruncher
[2026-05-02 13:37:44] apptainer works
[2026-05-02 13:37:44] Set ATHENA_PROC_NUMBER=4
[2026-05-02 13:37:44] Set ATHENA_CORE_NUMBER=4
[2026-05-02 13:37:44] Starting ATLAS job with PandaID=7125578233
[2026-05-02 13:37:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 15:46:20]  *** The last 200 lines of the pilot log: ***
[2026-05-02 15:46:20] 2026-05-02 20:45:11,395 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-02 15:46:20] 2026-05-02 20:45:11,463 | INFO     | job 7125578233 has state=finished
[2026-05-02 15:46:20] 2026-05-02 20:45:11,463 | INFO     | preparing for final server update for job 7125578233 in state='finished'
[2026-05-02 15:46:20] 2026-05-02 20:45:11,463 | INFO     | reading metadata from: /var/lib/boinc-client/slots/4/PanDA_Pilot-7125578233/jobReport.json
[2026-05-02 15:46:20] 2026-05-02 20:45:11,465 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/4/workernode_map.json
[2026-05-02 15:46:20] 2026-05-02 20:45:11,465 | INFO     | this job has now completed (state=finished)
[2026-05-02 15:46:20] 2026-05-02 20:45:11,466 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-02 15:46:20] 2026-05-02 20:45:11,466 | INFO     | log transfer has been attempted: DONE
[2026-05-02 15:46:20] 2026-05-02 20:45:11,466 | INFO     | job 7125578233 has finished - writing final server update
[2026-05-02 15:46:20] 2026-05-02 20:45:11,466 | INFO     | total number of processed events: 400 (read)
[2026-05-02 15:46:20] 2026-05-02 20:45:11,471 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-7125578233/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 15:46:20] 2026-05-02 20:45:11,471 | INFO     | extracted standard info from prmon json
[2026-05-02 15:46:20] 2026-05-02 20:45:11,471 | INFO     | extracted standard memory fields from prmon json
[2026-05-02 15:46:20] 2026-05-02 20:45:11,471 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-02 15:46:20] 2026-05-02 20:45:11,472 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-02 15:46:20] 2026-05-02 20:45:11,473 | INFO     | fitting pss+swap vs Time
[2026-05-02 15:46:20] 2026-05-02 20:45:11,473 | INFO     | sum of square deviations: 605592750.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,474 | INFO     | sum of deviations: -12205897297.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,474 | INFO     | mean x (centered): 0.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,474 | INFO     | mean y: 2370621.456
[2026-05-02 15:46:20] 2026-05-02 20:45:11,474 | INFO     | intersect: 2370621.456
[2026-05-02 15:46:20] 2026-05-02 20:45:11,474 | INFO     | chi2: 1.5753038856886483
[2026-05-02 15:46:20] 2026-05-02 20:45:11,475 | INFO     | sum of square deviations: 535786790.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,475 | INFO     | sum of deviations: -11303587737.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,475 | INFO     | mean x (centered): 0.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,475 | INFO     | mean y: 2372593.716666667
[2026-05-02 15:46:20] 2026-05-02 20:45:11,475 | INFO     | intersect: 2372593.716666667
[2026-05-02 15:46:20] 2026-05-02 20:45:11,476 | INFO     | chi2: 1.5718505354281207
[2026-05-02 15:46:20] 2026-05-02 20:45:11,476 | INFO     | current chi2=1.5718505354281207 (change=0.21921803735143966 %)
[2026-05-02 15:46:20] 2026-05-02 20:45:11,476 | INFO     | right removable region: 119
[2026-05-02 15:46:20] 2026-05-02 20:45:11,476 | INFO     | sum of square deviations: 535786790.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,476 | INFO     | sum of deviations: -26025304953.5
[2026-05-02 15:46:20] 2026-05-02 20:45:11,476 | INFO     | mean x (centered): 0.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,476 | INFO     | mean y: 2399997.375
[2026-05-02 15:46:20] 2026-05-02 20:45:11,477 | INFO     | intersect: 2399997.375
[2026-05-02 15:46:20] 2026-05-02 20:45:11,477 | INFO     | chi2: 0.2024546385854511
[2026-05-02 15:46:20] 2026-05-02 20:45:11,477 | INFO     | current chi2=0.2024546385854511 (change=87.14821689804012 %)
[2026-05-02 15:46:20] 2026-05-02 20:45:11,477 | INFO     | sum of square deviations: 471562330.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,477 | INFO     | sum of deviations: -22921124235.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,477 | INFO     | mean x (centered): 0.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,478 | INFO     | mean y: 2392554.0434782607
[2026-05-02 15:46:20] 2026-05-02 20:45:11,478 | INFO     | intersect: 2392554.0434782607
[2026-05-02 15:46:20] 2026-05-02 20:45:11,478 | INFO     | chi2: 0.1980087093419674
[2026-05-02 15:46:20] 2026-05-02 20:45:11,478 | INFO     | current chi2=0.1980087093419674 (change=2.196012536214218 %)
[2026-05-02 15:46:20] 2026-05-02 20:45:11,478 | INFO     | left removable region: 10
[2026-05-02 15:46:20] 2026-05-02 20:45:11,478 | INFO     | sum of square deviations: 401533110.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,478 | INFO     | sum of deviations: -21463405893.000004
[2026-05-02 15:46:20] 2026-05-02 20:45:11,479 | INFO     | mean x (centered): 0.0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,479 | INFO     | mean y: 2396366.889908257
[2026-05-02 15:46:20] 2026-05-02 20:45:11,479 | INFO     | intersect: 2396366.889908257
[2026-05-02 15:46:20] 2026-05-02 20:45:11,479 | INFO     | chi2: 0.18730861255548606
[2026-05-02 15:46:20] 2026-05-02 20:45:11,479 | INFO     | current memory leak: -53.45 B/s (using 109 data points, chi2=0.19)
[2026-05-02 15:46:20] 2026-05-02 20:45:11,479 | INFO     | could have reported an average CPU frequency of 3508 MHz (8 samples)
[2026-05-02 15:46:20] 2026-05-02 20:45:11,479 | INFO     | ..............................
[2026-05-02 15:46:20] 2026-05-02 20:45:11,479 | INFO     | . Timing measurements:
[2026-05-02 15:46:20] 2026-05-02 20:45:11,479 | INFO     | . get job = 0 s
[2026-05-02 15:46:20] 2026-05-02 20:45:11,479 | INFO     | . initial setup = 6 s
[2026-05-02 15:46:20] 2026-05-02 20:45:11,479 | INFO     | . payload setup = 7 s
[2026-05-02 15:46:20] 2026-05-02 20:45:11,479 | INFO     | . stage-in = 0 s
[2026-05-02 15:46:20] 2026-05-02 20:45:11,480 | INFO     | . payload execution = 7602 s
[2026-05-02 15:46:20] 2026-05-02 20:45:11,480 | INFO     | . stage-out = 0 s
[2026-05-02 15:46:20] 2026-05-02 20:45:11,480 | INFO     | . log creation = 0 s
[2026-05-02 15:46:20] 2026-05-02 20:45:11,480 | INFO     | ..............................
[2026-05-02 15:46:20] 2026-05-02 20:45:11,953 | INFO     | 
[2026-05-02 15:46:20] 2026-05-02 20:45:11,953 | INFO     | job summary report
[2026-05-02 15:46:20] 2026-05-02 20:45:11,953 | INFO     | --------------------------------------------------
[2026-05-02 15:46:20] 2026-05-02 20:45:11,953 | INFO     | PanDA job id: 7125578233
[2026-05-02 15:46:20] 2026-05-02 20:45:11,953 | INFO     | task id: 49718416
[2026-05-02 15:46:20] 2026-05-02 20:45:11,953 | INFO     | errors: (none)
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | pilot state: finished 
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | transexitcode: 0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | exeerrorcode: 0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | exeerrordiag: 
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | exitcode: 0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | exitmsg: OK
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | cpuconsumptiontime: 28383 s
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | nevents: 400
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | neventsw: 0
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | pid: 1056452
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | pgrp: 1056452
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | corecount: 4
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | event service: False
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | sizes: {0: 2275384, 1: 2277213, 11: 2277213, 7614: 2304933, 7615: 2304932, 7616: 2314000, 7619: 2314378}
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | --------------------------------------------------
[2026-05-02 15:46:20] 2026-05-02 20:45:11,954 | INFO     | 
[2026-05-02 15:46:20] 2026-05-02 20:45:11,955 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2026-05-02 15:46:20] 2026-05-02 20:45:11,973 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,973 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,973 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,973 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,973 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,973 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,973 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,973 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,973 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,973 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,973 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,974 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,974 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,974 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,974 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,974 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,974 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,974 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-02 15:46:20] 2026-05-02 20:45:11,974 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,974 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-02 15:46:20] 2026-05-02 20:45:11,975 | INFO     | job 7125578233 has completed (purged errors)
[2026-05-02 15:46:20] 2026-05-02 20:45:11,975 | INFO     | overall cleanup function is called
[2026-05-02 15:46:20] 2026-05-02 20:45:12,983 | INFO     | --- collectZombieJob: --- 10, [1056452]
[2026-05-02 15:46:20] 2026-05-02 20:45:12,983 | INFO     | zombie collector waiting for pid 1056452
[2026-05-02 15:46:20] 2026-05-02 20:45:12,983 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 15:46:20] 2026-05-02 20:45:12,983 | INFO     | collected zombie processes
[2026-05-02 15:46:20] 2026-05-02 20:45:12,983 | INFO     | will attempt to kill all subprocesses of pid=1056452
[2026-05-02 15:46:20] 2026-05-02 20:45:13,124 | INFO     | process IDs to be killed: [1056452] (in reverse order)
[2026-05-02 15:46:20] 2026-05-02 20:45:13,183 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 15:46:20] 2026-05-02 20:45:13,183 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 15:46:20] 2026-05-02 20:45:13,188 | INFO     | did not find any defunct processes belonging to 1056452
[2026-05-02 15:46:20] 2026-05-02 20:45:13,192 | INFO     | did not find any defunct processes belonging to 1056452
[2026-05-02 15:46:20] 2026-05-02 20:45:13,192 | INFO     | Ready for new job
[2026-05-02 15:46:20] 2026-05-02 20:45:13,194 | INFO     | ***************************************
[2026-05-02 15:46:20] 2026-05-02 20:45:13,194 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 15:46:20] 2026-05-02 20:45:13,194 | INFO     | ***************************************
[2026-05-02 15:46:20] 2026-05-02 20:45:13,194 | INFO     | 
[2026-05-02 15:46:20] 2026-05-02 20:45:13,195 | INFO     | architecture information:
[2026-05-02 15:46:20] 2026-05-02 20:45:13,196 | INFO     | executing command: cat /etc/os-release
[2026-05-02 15:46:20] 2026-05-02 20:45:13,208 | INFO     | cat /etc/os-release:
[2026-05-02 15:46:20] NAME="CentOS Linux"
[2026-05-02 15:46:20] VERSION="7 (Core)"
[2026-05-02 15:46:20] ID="centos"
[2026-05-02 15:46:20] ID_LIKE="rhel fedora"
[2026-05-02 15:46:20] VERSION_ID="7"
[2026-05-02 15:46:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 15:46:20] ANSI_COLOR="0;31"
[2026-05-02 15:46:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 15:46:20] HOME_URL="https://www.centos.org/"
[2026-05-02 15:46:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 15:46:20] 
[2026-05-02 15:46:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 15:46:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 15:46:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 15:46:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 15:46:20] 
[2026-05-02 15:46:20] 2026-05-02 20:45:13,208 | INFO     | ***************************************
[2026-05-02 15:46:20] 2026-05-02 20:45:13,708 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2026-05-02 15:46:20] 2026-05-02 20:45:13,721 | INFO     | sufficient remaining disk space (1812156383232 B)
[2026-05-02 15:46:20] 2026-05-02 20:45:13,721 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 15:46:20] 2026-05-02 20:45:13,722 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 15:46:20] 2026-05-02 20:45:13,722 | INFO     | update_server=False
[2026-05-02 15:46:20] 2026-05-02 20:45:13,722 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 15:46:20] 2026-05-02 20:45:13,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 15:46:20] 2026-05-02 20:45:13,722 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 15:46:20] 2026-05-02 20:45:13,875 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-02 15:46:20] 2026-05-02 20:45:13,875 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-02 15:46:20] 2026-05-02 20:45:13,875 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 15:46:20] 2026-05-02 20:45:13,875 | INFO     | will abort loop
[2026-05-02 15:46:20] 2026-05-02 20:45:14,156 | INFO     | all payload control threads have been joined
[2026-05-02 15:46:20] 2026-05-02 20:45:14,664 | INFO     | all data control threads have been joined
[2026-05-02 15:46:20] 2026-05-02 20:45:14,725 | INFO     | [job] retrieve thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:14,805 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:14,828 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:14,836 | INFO     | all job control threads have been joined
[2026-05-02 15:46:20] 2026-05-02 20:45:14,881 | INFO     | [job] job monitor thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:15,040 | INFO     | [data] copytool_in thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:15,160 | INFO     | [payload] control thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:15,253 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:15,374 | INFO     | [payload] failed_post thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:15,669 | INFO     | [data] control thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:15,727 | INFO     | [data] copytool_out thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:15,839 | INFO     | [job] control thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:16,002 | INFO     | [job] validate thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:16,008 | INFO     | [payload] validate_post thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:16,557 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 15:46:20] 2026-05-02 20:45:17,561 | INFO     | [job] queue monitor thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:17,727 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:24,756 | INFO     | job.realtimelogging is not enabled
[2026-05-02 15:46:20] 2026-05-02 20:45:25,762 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 15:46:20] 2026-05-02 20:45:44,704 | INFO     | PID=1051690 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-02 15:46:20] 2026-05-02 20:45:44,704 | INFO     | .. there are 7 such processes running
[2026-05-02 15:46:20] 2026-05-02 20:45:44,704 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 15:46:20] 2026-05-02 20:45:44,704 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 15:46:20] 2026-05-02 20:45:44,704 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 15:46:20] 2026-05-02 20:46:13,619 | INFO     | [monitor] cgroup control has ended
[2026-05-02 15:46:20] 2026-05-02 20:46:15,240 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132362094995264)>', '<ExcThread(monitor, started 132361622644480)>']
[2026-05-02 15:46:20] 2026-05-02 20:46:15,832 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 15:46:20] 2026-05-02 20:46:15,832 | INFO     | [monitor] control thread has ended
[2026-05-02 15:46:20] 2026-05-02 20:46:20,264 | INFO     | all workflow threads have been joined
[2026-05-02 15:46:20] 2026-05-02 20:46:20,265 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 15:46:20] 2026-05-02 20:46:20,265 | INFO     | traces error code: 0
[2026-05-02 15:46:20] 2026-05-02 20:46:20,265 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 15:46:20] 2026-05-02 20:46:20,343 [wrapper] ==== pilot stdout END ====
[2026-05-02 15:46:20] 2026-05-02 20:46:20,345 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 15:46:20] 2026-05-02 20:46:20,347 [wrapper] pilotpid: 1051690
[2026-05-02 15:46:20] 2026-05-02 20:46:20,348 [wrapper] Pilot exit status: 0
[2026-05-02 15:46:20] 2026-05-02 20:46:20,356 [wrapper] pandaids: 7125578233
[2026-05-02 15:46:20] 2026-05-02 20:46:20,395 [wrapper] cleanup supervisor_pilot 1194300 1051691
[2026-05-02 15:46:20] 2026-05-02 20:46:20,397 [wrapper] Test setup, not cleaning
[2026-05-02 15:46:20] 2026-05-02 20:46:20,400 [wrapper] apfmon messages muted
[2026-05-02 15:46:20] 2026-05-02 20:46:20,401 [wrapper] ==== wrapper stdout END ====
[2026-05-02 15:46:20] 2026-05-02 20:46:20,403 [wrapper] ==== wrapper stderr END ====
[2026-05-02 15:46:20]  *** Error codes and diagnostics ***
[2026-05-02 15:46:20]     "exeErrorCode": 0,
[2026-05-02 15:46:20]     "pilotErrorCode": 0,
[2026-05-02 15:46:20]  *** Listing of results directory ***
[2026-05-02 15:46:20] total 623612
[2026-05-02 15:46:20] -rwx------ 1 boinc boinc     36322 May  1 23:06 runpilot2-wrapper.sh
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc    683926 May  1 23:06 pilot3.tar.gz
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc      5631 May  1 23:07 queuedata.json
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc       100 May  2 13:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 15:46:20] -rwxr-xr-x 1 boinc boinc      7986 May  2 13:37 run_atlas
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc       105 May  2 13:37 job.xml
[2026-05-02 15:46:20] -rw-r--r-- 2 boinc boinc 446619226 May  2 13:37 EVNT.46373187._000041.pool.root.1
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc      9582 May  2 13:37 init_data.xml
[2026-05-02 15:46:20] -rw-r--r-- 2 boinc boinc     15667 May  2 13:37 start_atlas.sh
[2026-05-02 15:46:20] drwxrwx--x 2 boinc boinc      4096 May  2 13:37 shared
[2026-05-02 15:46:20] -rw-r--r-- 2 boinc boinc    697427 May  2 13:37 input.tar.gz
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc         0 May  2 13:37 boinc_lockfile
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc      2597 May  2 13:37 pandaJob.out
[2026-05-02 15:46:20] -rw------- 1 boinc boinc   1002975 May  2 13:37 agis_schedconf.cvmfs.json
[2026-05-02 15:46:20] -rw------- 1 boinc boinc   1508687 May  2 13:37 agis_ddmendpoints.agis.ALL.json
[2026-05-02 15:46:20] -rw------- 1 boinc boinc       433 May  2 13:38 workernode_map.json
[2026-05-02 15:46:20] drwx------ 5 boinc boinc      4096 May  2 13:38 pilot3
[2026-05-02 15:46:20] -rw------- 1 boinc boinc 185702112 May  2 15:44 HITS.49718416._022485.pool.root.1
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc       488 May  2 15:44 boinc_task_state.xml
[2026-05-02 15:46:20] -rw------- 1 boinc boinc        95 May  2 15:44 pilot_heartbeat.json
[2026-05-02 15:46:20] -rw------- 1 boinc boinc      1022 May  2 15:45 memory_monitor_summary.json
[2026-05-02 15:46:20] -rw------- 1 boinc boinc    308455 May  2 15:45 log.49718416._022485.job.log.tgz.1
[2026-05-02 15:46:20] -rw------- 1 boinc boinc      6338 May  2 15:45 heartbeat_new.json
[2026-05-02 15:46:20] -rw------- 1 boinc boinc      6229 May  2 15:45 heartbeat.json
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc      8192 May  2 15:46 boinc_mmap_file
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc        27 May  2 15:46 wrapper_checkpoint.txt
[2026-05-02 15:46:20] -rw------- 1 boinc boinc      5089 May  2 15:46 pilotlog.txt
[2026-05-02 15:46:20] -rw------- 1 boinc boinc    745576 May  2 15:46 log.49718416._022485.job.log.1
[2026-05-02 15:46:20] -rw------- 1 boinc boinc       357 May  2 15:46 output.list
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc       410 May  2 15:46 runtime_log
[2026-05-02 15:46:20] -rw------- 1 boinc boinc   1075200 May  2 15:46 result.tar.gz
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc      8555 May  2 15:46 runtime_log.err
[2026-05-02 15:46:20] -rw------- 1 boinc boinc       653 May  2 15:46 782b69c4ae76.diag
[2026-05-02 15:46:20] -rw-r--r-- 1 boinc boinc     20866 May  2 15:46 stderr.txt
[2026-05-02 15:46:20] HITS file was successfully produced:
[2026-05-02 15:46:20] -rw------- 1 boinc boinc 185702112 May  2 15:44 shared/HITS.pool.root.1
[2026-05-02 15:46:20]  *** Contents of shared directory: ***
[2026-05-02 15:46:20] total 619264
[2026-05-02 15:46:20] -rw-r--r-- 2 boinc boinc 446619226 May  2 13:37 ATLAS.root_0
[2026-05-02 15:46:20] -rw-r--r-- 2 boinc boinc     15667 May  2 13:37 start_atlas.sh
[2026-05-02 15:46:20] -rw-r--r-- 2 boinc boinc    697427 May  2 13:37 input.tar.gz
[2026-05-02 15:46:20] -rw------- 1 boinc boinc 185702112 May  2 15:44 HITS.pool.root.1
[2026-05-02 15:46:20] -rw------- 1 boinc boinc   1075200 May  2 15:46 result.tar.gz
15:46:21 (1047387): run_atlas exited; CPU time 28489.273880
15:46:21 (1047387): called boinc_finish(0)

</stderr_txt>
]]>

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