Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:43:10 (16426): wrapper (7.7.26015): starting
17:43:10 (16426): wrapper: running run_atlas (--nthreads 8)
[2026-05-02 17:43:10] Arguments: --nthreads 8
[2026-05-02 17:43:10] Threads: 8
[2026-05-02 17:43:10] Checking for CVMFS
[2026-05-02 17:43:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-02 17:43:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-02 17:43:13] Running cvmfs_config stat atlas.cern.ch
[2026-05-02 17:43:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-02 17:43:14] 2.11.2.0 19079 24414 99976 159136 0 94 20205220 25165824 1088 130560 0 10252272 99.907 4003221 5303 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-02 17:43:14] CVMFS is ok
[2026-05-02 17:43:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 17:43:14] Checking for apptainer binary...
[2026-05-02 17:43:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-02 17:43:14] Running /usr/bin/apptainer --version
[2026-05-02 17:43:14] apptainer version 1.3.2-1.el7
[2026-05-02 17:43:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 17:43:28] cg-vwn478.simple-grid.lan
[2026-05-02 17:43:28] apptainer works
[2026-05-02 17:43:28] Set ATHENA_PROC_NUMBER=8
[2026-05-02 17:43:28] Set ATHENA_CORE_NUMBER=8
[2026-05-02 17:43:28] Starting ATLAS job with PandaID=7123454365
[2026-05-02 17:43:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 21:40:40]  *** The last 200 lines of the pilot log: ***
[2026-05-02 21:40:40] 2026-05-02 19:39:53,929 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-02 21:40:40] 2026-05-02 19:39:53,929 | INFO     | log transfer has been attempted: DONE
[2026-05-02 21:40:40] 2026-05-02 19:39:53,929 | INFO     | job 7123454365 has finished - writing final server update
[2026-05-02 21:40:40] 2026-05-02 19:39:53,930 | INFO     | total number of processed events: 400 (read)
[2026-05-02 21:40:40] 2026-05-02 19:39:53,932 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7123454365/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 21:40:40] 2026-05-02 19:39:53,932 | INFO     | extracted standard info from prmon json
[2026-05-02 21:40:40] 2026-05-02 19:39:53,932 | INFO     | extracted standard memory fields from prmon json
[2026-05-02 21:40:40] 2026-05-02 19:39:53,933 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-02 21:40:40] 2026-05-02 19:39:53,933 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-02 21:40:40] 2026-05-02 19:39:53,937 | INFO     | fitting pss+swap vs Time
[2026-05-02 21:40:40] 2026-05-02 19:39:53,938 | INFO     | sum of square deviations: 3256879670.0
[2026-05-02 21:40:40] 2026-05-02 19:39:53,939 | INFO     | sum of deviations: 127099750609.0
[2026-05-02 21:40:40] 2026-05-02 19:39:53,940 | INFO     | mean x (centered): 0.0
[2026-05-02 21:40:40] 2026-05-02 19:39:53,940 | INFO     | mean y: 2394820.3470319635
[2026-05-02 21:40:40] 2026-05-02 19:39:53,940 | INFO     | intersect: 2394820.3470319635
[2026-05-02 21:40:40] 2026-05-02 19:39:53,940 | INFO     | chi2: 8.910747697517841
[2026-05-02 21:40:40] 2026-05-02 19:39:53,941 | INFO     | sum of square deviations: 3038856977.5
[2026-05-02 21:40:40] 2026-05-02 19:39:53,942 | INFO     | sum of deviations: 138400611615.5
[2026-05-02 21:40:40] 2026-05-02 19:39:53,942 | INFO     | mean x (centered): 0.0
[2026-05-02 21:40:40] 2026-05-02 19:39:53,943 | INFO     | mean y: 2402536.836448598
[2026-05-02 21:40:40] 2026-05-02 19:39:53,943 | INFO     | intersect: 2402536.836448598
[2026-05-02 21:40:40] 2026-05-02 19:39:53,943 | INFO     | chi2: 8.220970225016625
[2026-05-02 21:40:40] 2026-05-02 19:39:53,943 | INFO     | current chi2=8.220970225016625 (change=7.740960645685874 %)
[2026-05-02 21:40:40] 2026-05-02 19:39:53,943 | INFO     | right removable region: 213
[2026-05-02 21:40:40] 2026-05-02 19:39:53,944 | INFO     | sum of square deviations: 3038856977.5
[2026-05-02 21:40:40] 2026-05-02 19:39:53,945 | INFO     | sum of deviations: 49415568140.99999
[2026-05-02 21:40:40] 2026-05-02 19:39:53,945 | INFO     | mean x (centered): 0.0
[2026-05-02 21:40:40] 2026-05-02 19:39:53,946 | INFO     | mean y: 2449141.7102803737
[2026-05-02 21:40:40] 2026-05-02 19:39:53,946 | INFO     | intersect: 2449141.7102803737
[2026-05-02 21:40:40] 2026-05-02 19:39:53,946 | INFO     | chi2: 3.4690559041560176
[2026-05-02 21:40:40] 2026-05-02 19:39:53,946 | INFO     | current chi2=3.4690559041560176 (change=61.06885727308439 %)
[2026-05-02 21:40:40] 2026-05-02 19:39:53,947 | INFO     | sum of square deviations: 2830787960.0
[2026-05-02 21:40:40] 2026-05-02 19:39:53,948 | INFO     | sum of deviations: -5825546543.0
[2026-05-02 21:40:40] 2026-05-02 19:39:53,948 | INFO     | mean x (centered): 0.0
[2026-05-02 21:40:40] 2026-05-02 19:39:53,948 | INFO     | mean y: 2489527.7320574163
[2026-05-02 21:40:40] 2026-05-02 19:39:53,949 | INFO     | intersect: 2489527.7320574163
[2026-05-02 21:40:40] 2026-05-02 19:39:53,949 | INFO     | chi2: 0.8936508729062492
[2026-05-02 21:40:40] 2026-05-02 19:39:53,949 | INFO     | current chi2=0.8936508729062492 (change=74.23936374632555 %)
[2026-05-02 21:40:40] 2026-05-02 19:39:53,949 | INFO     | sum of square deviations: 2632440055.0
[2026-05-02 21:40:40] 2026-05-02 19:39:53,951 | INFO     | sum of deviations: -10590354966.500002
[2026-05-02 21:40:40] 2026-05-02 19:39:53,951 | INFO     | mean x (centered): 0.0
[2026-05-02 21:40:40] 2026-05-02 19:39:53,951 | INFO     | mean y: 2493115.4656862747
[2026-05-02 21:40:40] 2026-05-02 19:39:53,951 | INFO     | intersect: 2493115.4656862747
[2026-05-02 21:40:40] 2026-05-02 19:39:53,952 | INFO     | chi2: 0.8309803493192712
[2026-05-02 21:40:40] 2026-05-02 19:39:53,952 | INFO     | current chi2=0.8309803493192712 (change=7.012864362026155 %)
[2026-05-02 21:40:40] 2026-05-02 19:39:53,952 | INFO     | left removable region: 15
[2026-05-02 21:40:40] 2026-05-02 19:39:53,952 | INFO     | sum of square deviations: 2406926989.5
[2026-05-02 21:40:40] 2026-05-02 19:39:53,954 | INFO     | sum of deviations: 2984556729.4999986
[2026-05-02 21:40:40] 2026-05-02 19:39:53,954 | INFO     | mean x (centered): 0.0
[2026-05-02 21:40:40] 2026-05-02 19:39:53,954 | INFO     | mean y: 2503859.6717171716
[2026-05-02 21:40:40] 2026-05-02 19:39:53,954 | INFO     | intersect: 2503859.6717171716
[2026-05-02 21:40:40] 2026-05-02 19:39:53,954 | INFO     | chi2: 0.0365193263880166
[2026-05-02 21:40:40] 2026-05-02 19:39:53,955 | INFO     | current memory leak: 1.24 B/s (using 198 data points, chi2=0.04)
[2026-05-02 21:40:40] 2026-05-02 19:39:53,955 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2026-05-02 21:40:40] 2026-05-02 19:39:53,955 | INFO     | ..............................
[2026-05-02 21:40:40] 2026-05-02 19:39:53,956 | INFO     | . Timing measurements:
[2026-05-02 21:40:40] 2026-05-02 19:39:53,956 | INFO     | . get job = 0 s
[2026-05-02 21:40:40] 2026-05-02 19:39:53,956 | INFO     | . initial setup = 122 s
[2026-05-02 21:40:40] 2026-05-02 19:39:53,956 | INFO     | . payload setup = 278 s
[2026-05-02 21:40:40] 2026-05-02 19:39:53,956 | INFO     | . stage-in = 0 s
[2026-05-02 21:40:40] 2026-05-02 19:39:53,956 | INFO     | . payload execution = 13484 s
[2026-05-02 21:40:40] 2026-05-02 19:39:53,956 | INFO     | . stage-out = 4 s
[2026-05-02 21:40:40] 2026-05-02 19:39:53,956 | INFO     | . log creation = 1 s
[2026-05-02 21:40:40] 2026-05-02 19:39:53,956 | INFO     | ..............................
[2026-05-02 21:40:40] 2026-05-02 19:39:54,197 | INFO     | 
[2026-05-02 21:40:40] 2026-05-02 19:39:54,198 | INFO     | job summary report
[2026-05-02 21:40:40] 2026-05-02 19:39:54,198 | INFO     | --------------------------------------------------
[2026-05-02 21:40:40] 2026-05-02 19:39:54,198 | INFO     | PanDA job id: 7123454365
[2026-05-02 21:40:40] 2026-05-02 19:39:54,198 | INFO     | task id: 49263200
[2026-05-02 21:40:40] 2026-05-02 19:39:54,198 | INFO     | errors: (none)
[2026-05-02 21:40:40] 2026-05-02 19:39:54,198 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-02 21:40:40] 2026-05-02 19:39:54,198 | INFO     | pilot state: finished 
[2026-05-02 21:40:40] 2026-05-02 19:39:54,198 | INFO     | transexitcode: 0
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | exeerrorcode: 0
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | exeerrordiag: 
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | exitcode: 0
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | exitmsg: OK
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | cpuconsumptiontime: 48515 s
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | nevents: 400
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | neventsw: 0
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | pid: 24951
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | pgrp: 24951
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | corecount: 8
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | event service: False
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | sizes: {0: 2275358, 1: 2277187, 12: 2277187, 13767: 2307492, 13772: 2316518, 13774: 2316574, 13776: 2316896}
[2026-05-02 21:40:40] 2026-05-02 19:39:54,199 | INFO     | --------------------------------------------------
[2026-05-02 21:40:40] 2026-05-02 19:39:54,200 | INFO     | 
[2026-05-02 21:40:40] 2026-05-02 19:39:54,200 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-05-02 21:40:40] 2026-05-02 19:39:54,744 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,745 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,745 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,745 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,745 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,745 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,745 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,745 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,745 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,745 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,745 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,745 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,745 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,746 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,746 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,746 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,746 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,746 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-02 21:40:40] 2026-05-02 19:39:54,746 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,746 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-02 21:40:40] 2026-05-02 19:39:54,746 | INFO     | job 7123454365 has completed (purged errors)
[2026-05-02 21:40:40] 2026-05-02 19:39:54,746 | INFO     | overall cleanup function is called
[2026-05-02 21:40:40] 2026-05-02 19:39:55,754 | INFO     | --- collectZombieJob: --- 10, [24951]
[2026-05-02 21:40:40] 2026-05-02 19:39:55,755 | INFO     | zombie collector waiting for pid 24951
[2026-05-02 21:40:40] 2026-05-02 19:39:55,755 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 21:40:40] 2026-05-02 19:39:55,755 | INFO     | collected zombie processes
[2026-05-02 21:40:40] 2026-05-02 19:39:55,755 | INFO     | will attempt to kill all subprocesses of pid=24951
[2026-05-02 21:40:40] 2026-05-02 19:39:55,803 | INFO     | process IDs to be killed: [24951] (in reverse order)
[2026-05-02 21:40:40] 2026-05-02 19:39:56,654 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 21:40:40] 2026-05-02 19:39:56,654 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 21:40:40] 2026-05-02 19:39:56,659 | INFO     | did not find any defunct processes belonging to 24951
[2026-05-02 21:40:40] 2026-05-02 19:39:56,661 | INFO     | did not find any defunct processes belonging to 24951
[2026-05-02 21:40:40] 2026-05-02 19:39:56,661 | INFO     | Ready for new job
[2026-05-02 21:40:40] 2026-05-02 19:39:56,663 | INFO     | ***************************************
[2026-05-02 21:40:40] 2026-05-02 19:39:56,663 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 21:40:40] 2026-05-02 19:39:56,663 | INFO     | ***************************************
[2026-05-02 21:40:40] 2026-05-02 19:39:56,663 | INFO     | 
[2026-05-02 21:40:40] 2026-05-02 19:39:56,664 | INFO     | pilot is running in a VM
[2026-05-02 21:40:40] 2026-05-02 19:39:56,664 | INFO     | architecture information:
[2026-05-02 21:40:40] 2026-05-02 19:39:56,679 | INFO     | executing command: cat /etc/os-release
[2026-05-02 21:40:40] 2026-05-02 19:39:57,001 | INFO     | cat /etc/os-release:
[2026-05-02 21:40:40] NAME="CentOS Linux"
[2026-05-02 21:40:40] VERSION="7 (Core)"
[2026-05-02 21:40:40] ID="centos"
[2026-05-02 21:40:40] ID_LIKE="rhel fedora"
[2026-05-02 21:40:40] VERSION_ID="7"
[2026-05-02 21:40:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 21:40:40] ANSI_COLOR="0;31"
[2026-05-02 21:40:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 21:40:40] HOME_URL="https://www.centos.org/"
[2026-05-02 21:40:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 21:40:40] 
[2026-05-02 21:40:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 21:40:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 21:40:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 21:40:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 21:40:40] 
[2026-05-02 21:40:40] 2026-05-02 19:39:57,001 | INFO     | ***************************************
[2026-05-02 21:40:40] 2026-05-02 19:39:57,505 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-05-02 21:40:40] 2026-05-02 19:39:57,741 | INFO     | sufficient remaining disk space (494953037824 B)
[2026-05-02 21:40:40] 2026-05-02 19:39:57,741 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 21:40:40] 2026-05-02 19:39:57,742 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 21:40:40] 2026-05-02 19:39:57,742 | INFO     | update_server=False
[2026-05-02 21:40:40] 2026-05-02 19:39:57,742 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 21:40:40] 2026-05-02 19:39:58,162 | INFO     | all payload control threads have been joined
[2026-05-02 21:40:40] 2026-05-02 19:39:58,181 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 21:40:40] 2026-05-02 19:39:58,228 | INFO     | all job control threads have been joined
[2026-05-02 21:40:40] 2026-05-02 19:39:58,730 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 21:40:40] 2026-05-02 19:39:58,731 | INFO     | aborting loop
[2026-05-02 21:40:40] 2026-05-02 19:39:58,748 | INFO     | [job] retrieve thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:39:58,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 21:40:40] 2026-05-02 19:39:58,844 | INFO     | all data control threads have been joined
[2026-05-02 21:40:40] 2026-05-02 19:39:59,093 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 21:40:40] 2026-05-02 19:39:59,169 | INFO     | [payload] control thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:39:59,235 | INFO     | [job] control thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:39:59,497 | INFO     | [job] validate thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:39:59,497 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:39:59,504 | INFO     | [payload] validate_post thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:39:59,737 | INFO     | [job] job monitor thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:39:59,851 | INFO     | [data] control thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:39:59,958 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:40:00,012 | INFO     | [payload] failed_post thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:40:00,018 | INFO     | [data] copytool_in thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:40:00,100 | INFO     | [job] queue monitor thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:40:00,190 | INFO     | [data] copytool_out thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:40:00,215 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:40:02,760 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:40:07,982 | INFO     | job.realtimelogging is not enabled
[2026-05-02 21:40:40] 2026-05-02 19:40:08,989 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 21:40:40] 2026-05-02 19:40:26,229 | INFO     | PID=20454 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-02 21:40:40] 2026-05-02 19:40:26,229 | INFO     | .. there are 2 such processes running
[2026-05-02 21:40:40] 2026-05-02 19:40:26,229 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 21:40:40] 2026-05-02 19:40:26,229 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 21:40:40] 2026-05-02 19:40:26,229 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 21:40:40] 2026-05-02 19:40:29,396 | INFO     | [monitor] cgroup control has ended
[2026-05-02 21:40:40] 2026-05-02 19:40:30,158 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139848280266560)>', '<ExcThread(monitor, started 139847557707520)>']
[2026-05-02 21:40:40] 2026-05-02 19:40:30,252 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 21:40:40] 2026-05-02 19:40:30,253 | INFO     | [monitor] control thread has ended
[2026-05-02 21:40:40] 2026-05-02 19:40:35,183 | INFO     | all workflow threads have been joined
[2026-05-02 21:40:40] 2026-05-02 19:40:35,184 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 21:40:40] 2026-05-02 19:40:35,184 | INFO     | traces error code: 0
[2026-05-02 21:40:40] 2026-05-02 19:40:35,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 21:40:40] 2026-05-02 19:40:35,555 [wrapper] ==== pilot stdout END ====
[2026-05-02 21:40:40] 2026-05-02 19:40:35,646 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 21:40:40] 2026-05-02 19:40:35,731 [wrapper] pilotpid: 20454
[2026-05-02 21:40:40] 2026-05-02 19:40:35,848 [wrapper] Pilot exit status: 0
[2026-05-02 21:40:40] 2026-05-02 19:40:36,233 [wrapper] pandaids: 7123454365
[2026-05-02 21:40:40] 2026-05-02 19:40:37,301 [wrapper] cleanup supervisor_pilot 32530 20455
[2026-05-02 21:40:40] 2026-05-02 19:40:37,335 [wrapper] Test setup, not cleaning
[2026-05-02 21:40:40] 2026-05-02 19:40:37,439 [wrapper] apfmon messages muted
[2026-05-02 21:40:40] 2026-05-02 19:40:37,545 [wrapper] ==== wrapper stdout END ====
[2026-05-02 21:40:40] 2026-05-02 19:40:37,651 [wrapper] ==== wrapper stderr END ====
[2026-05-02 21:40:40]  *** Error codes and diagnostics ***
[2026-05-02 21:40:40]     "exeErrorCode": 0,
[2026-05-02 21:40:40]     "pilotErrorCode": 0,
[2026-05-02 21:40:40]  *** Listing of results directory ***
[2026-05-02 21:40:40] total 419004
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc    683926 May  2 06:06 pilot3.tar.gz
[2026-05-02 21:40:40] -rwx------. 1 boinc boinc     36322 May  2 06:07 runpilot2-wrapper.sh
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc      5631 May  2 06:07 queuedata.json
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc       100 May  2 17:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 21:40:40] -rwxr-xr-x. 1 boinc boinc      7986 May  2 17:43 run_atlas
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc       105 May  2 17:43 job.xml
[2026-05-02 21:40:40] -rw-r--r--. 2 boinc boinc 226277134 May  2 17:43 EVNT.49263198._001949.pool.root.1
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc      6307 May  2 17:43 init_data.xml
[2026-05-02 21:40:40] -rw-r--r--. 2 boinc boinc     15667 May  2 17:43 start_atlas.sh
[2026-05-02 21:40:40] drwxrwx--x. 2 boinc boinc        68 May  2 17:43 shared
[2026-05-02 21:40:40] -rw-r--r--. 2 boinc boinc    697425 May  2 17:43 input.tar.gz
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc         0 May  2 17:43 boinc_lockfile
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc      2577 May  2 17:43 pandaJob.out
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc       415 May  2 17:50 workernode_map.json
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc   1002984 May  2 17:50 agis_schedconf.cvmfs.json
[2026-05-02 21:40:40] drwx------. 5 boinc boinc      4096 May  2 17:50 pilot3
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc 195300568 May  2 21:38 HITS.49263200._089325.pool.root.1
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc       489 May  2 21:38 boinc_task_state.xml
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc        95 May  2 21:39 pilot_heartbeat.json
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc      1012 May  2 21:39 memory_monitor_summary.json
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc   1508687 May  2 21:39 agis_ddmendpoints.agis.ALL.json
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc    390073 May  2 21:39 log.49263200._089325.job.log.tgz.1
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc      6340 May  2 21:39 heartbeat_new.json
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc      6231 May  2 21:39 heartbeat.json
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc      8192 May  2 21:40 boinc_mmap_file
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc        28 May  2 21:40 wrapper_checkpoint.txt
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc      4955 May  2 21:40 pilotlog.txt
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc   1289859 May  2 21:40 log.49263200._089325.job.log.1
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc       357 May  2 21:40 output.list
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc       410 May  2 21:40 runtime_log
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc   1699840 May  2 21:40 result.tar.gz
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc      8439 May  2 21:40 runtime_log.err
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc       655 May  2 21:40 78664d884480.diag
[2026-05-02 21:40:40] -rw-r--r--. 1 boinc boinc     20619 May  2 21:40 stderr.txt
[2026-05-02 21:40:40] HITS file was successfully produced:
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc 195300568 May  2 21:38 shared/HITS.pool.root.1
[2026-05-02 21:40:40]  *** Contents of shared directory: ***
[2026-05-02 21:40:40] total 414060
[2026-05-02 21:40:40] -rw-r--r--. 2 boinc boinc 226277134 May  2 17:43 ATLAS.root_0
[2026-05-02 21:40:40] -rw-r--r--. 2 boinc boinc     15667 May  2 17:43 start_atlas.sh
[2026-05-02 21:40:40] -rw-r--r--. 2 boinc boinc    697425 May  2 17:43 input.tar.gz
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc 195300568 May  2 21:38 HITS.pool.root.1
[2026-05-02 21:40:40] -rw-------. 1 boinc boinc   1699840 May  2 21:40 result.tar.gz
21:40:41 (16426): run_atlas exited; CPU time 48637.838145
21:40:41 (16426): called boinc_finish(0)

</stderr_txt>
]]>

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