Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:25:55 (9296): wrapper (7.7.26015): starting
20:25:55 (9296): wrapper: running run_atlas (--nthreads 8)
[2026-05-02 20:25:55] Arguments: --nthreads 8
[2026-05-02 20:25:55] Threads: 8
[2026-05-02 20:25:55] Checking for CVMFS
[2026-05-02 20:25:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-02 20:25:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-02 20:25:55] Running cvmfs_config stat atlas.cern.ch
[2026-05-02 20:25:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-02 20:25:55] 2.11.2.0 2888 24561 99448 159140 1 265 13917011 25165825 368 130560 0 72290660 99.982 9500568 5936 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-02 20:25:55] CVMFS is ok
[2026-05-02 20:25:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 20:25:55] Checking for apptainer binary...
[2026-05-02 20:25:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-02 20:25:55] Running /usr/bin/apptainer --version
[2026-05-02 20:25:55] apptainer version 1.3.2-1.el7
[2026-05-02 20:25:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 20:25:57] cg-vwn421.simple-grid.lan
[2026-05-02 20:25:57] apptainer works
[2026-05-02 20:25:57] Set ATHENA_PROC_NUMBER=8
[2026-05-02 20:25:57] Set ATHENA_CORE_NUMBER=8
[2026-05-02 20:25:57] Starting ATLAS job with PandaID=7123454822
[2026-05-02 20:25:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 22:59:37]  *** The last 200 lines of the pilot log: ***
[2026-05-02 22:59:37] 2026-05-02 20:58:49,712 | INFO     | extracted standard info from prmon json
[2026-05-02 22:59:37] 2026-05-02 20:58:49,712 | INFO     | extracted standard memory fields from prmon json
[2026-05-02 22:59:37] 2026-05-02 20:58:49,712 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-02 22:59:37] 2026-05-02 20:58:49,712 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-02 22:59:37] 2026-05-02 20:58:49,715 | INFO     | fitting pss+swap vs Time
[2026-05-02 22:59:37] 2026-05-02 20:58:49,716 | INFO     | sum of square deviations: 1046484737.5
[2026-05-02 22:59:37] 2026-05-02 20:58:49,717 | INFO     | sum of deviations: -19357573988.5
[2026-05-02 22:59:37] 2026-05-02 20:58:49,717 | INFO     | mean x (centered): 0.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,717 | INFO     | mean y: 2530543.1133333333
[2026-05-02 22:59:37] 2026-05-02 20:58:49,717 | INFO     | intersect: 2530543.1133333333
[2026-05-02 22:59:37] 2026-05-02 20:58:49,717 | INFO     | chi2: 2.457239328769243
[2026-05-02 22:59:37] 2026-05-02 20:58:49,718 | INFO     | sum of square deviations: 945282840.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,719 | INFO     | sum of deviations: -8410545677.999994
[2026-05-02 22:59:37] 2026-05-02 20:58:49,719 | INFO     | mean x (centered): 0.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,719 | INFO     | mean y: 2546636.04137931
[2026-05-02 22:59:37] 2026-05-02 20:58:49,719 | INFO     | intersect: 2546636.04137931
[2026-05-02 22:59:37] 2026-05-02 20:58:49,719 | INFO     | chi2: 1.6905142652545548
[2026-05-02 22:59:37] 2026-05-02 20:58:49,720 | INFO     | current chi2=1.6905142652545548 (change=31.202701932119798 %)
[2026-05-02 22:59:37] 2026-05-02 20:58:49,720 | INFO     | sum of square deviations: 850825255.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,721 | INFO     | sum of deviations: -7574359111.5000105
[2026-05-02 22:59:37] 2026-05-02 20:58:49,721 | INFO     | mean x (centered): 0.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,721 | INFO     | mean y: 2547986.5785714285
[2026-05-02 22:59:37] 2026-05-02 20:58:49,721 | INFO     | intersect: 2547986.5785714285
[2026-05-02 22:59:37] 2026-05-02 20:58:49,721 | INFO     | chi2: 1.6904961681790067
[2026-05-02 22:59:37] 2026-05-02 20:58:49,722 | INFO     | current chi2=1.6904961681790067 (change=0.0010705071184591859 %)
[2026-05-02 22:59:37] 2026-05-02 20:58:49,722 | INFO     | right removable region: 139
[2026-05-02 22:59:37] 2026-05-02 20:58:49,722 | INFO     | sum of square deviations: 945282840.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,723 | INFO     | sum of deviations: -42481169453.99999
[2026-05-02 22:59:37] 2026-05-02 20:58:49,723 | INFO     | mean x (centered): 0.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,723 | INFO     | mean y: 2564857.0137931034
[2026-05-02 22:59:37] 2026-05-02 20:58:49,723 | INFO     | intersect: 2564857.0137931034
[2026-05-02 22:59:37] 2026-05-02 20:58:49,723 | INFO     | chi2: 0.9448060283644716
[2026-05-02 22:59:37] 2026-05-02 20:58:49,724 | INFO     | current chi2=0.9448060283644716 (change=61.55010147759208 %)
[2026-05-02 22:59:37] 2026-05-02 20:58:49,724 | INFO     | sum of square deviations: 850825255.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,725 | INFO     | sum of deviations: -40849686329.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,725 | INFO     | mean x (centered): 0.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,725 | INFO     | mean y: 2562161.9
[2026-05-02 22:59:37] 2026-05-02 20:58:49,725 | INFO     | intersect: 2562161.9
[2026-05-02 22:59:37] 2026-05-02 20:58:49,725 | INFO     | chi2: 0.9317877405116334
[2026-05-02 22:59:37] 2026-05-02 20:58:49,725 | INFO     | current chi2=0.9317877405116334 (change=1.3778794230783873 %)
[2026-05-02 22:59:37] 2026-05-02 20:58:49,726 | INFO     | left removable region: 10
[2026-05-02 22:59:37] 2026-05-02 20:58:49,726 | INFO     | sum of square deviations: 665612480.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,727 | INFO     | sum of deviations: -28165450212.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,727 | INFO     | mean x (centered): 0.0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,727 | INFO     | mean y: 2583957.573643411
[2026-05-02 22:59:37] 2026-05-02 20:58:49,727 | INFO     | intersect: 2583957.573643411
[2026-05-02 22:59:37] 2026-05-02 20:58:49,727 | INFO     | chi2: 0.12009079346323935
[2026-05-02 22:59:37] 2026-05-02 20:58:49,727 | INFO     | current memory leak: -42.32 B/s (using 129 data points, chi2=0.12)
[2026-05-02 22:59:37] 2026-05-02 20:58:49,728 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-05-02 22:59:37] 2026-05-02 20:58:49,728 | INFO     | ..............................
[2026-05-02 22:59:37] 2026-05-02 20:58:49,728 | INFO     | . Timing measurements:
[2026-05-02 22:59:37] 2026-05-02 20:58:49,728 | INFO     | . get job = 0 s
[2026-05-02 22:59:37] 2026-05-02 20:58:49,728 | INFO     | . initial setup = 6 s
[2026-05-02 22:59:37] 2026-05-02 20:58:49,728 | INFO     | . payload setup = 13 s
[2026-05-02 22:59:37] 2026-05-02 20:58:49,729 | INFO     | . stage-in = 0 s
[2026-05-02 22:59:37] 2026-05-02 20:58:49,729 | INFO     | . payload execution = 9122 s
[2026-05-02 22:59:37] 2026-05-02 20:58:49,729 | INFO     | . stage-out = 0 s
[2026-05-02 22:59:37] 2026-05-02 20:58:49,729 | INFO     | . log creation = 0 s
[2026-05-02 22:59:37] 2026-05-02 20:58:49,729 | INFO     | ..............................
[2026-05-02 22:59:37] 2026-05-02 20:58:49,833 | INFO     | 
[2026-05-02 22:59:37] 2026-05-02 20:58:49,833 | INFO     | job summary report
[2026-05-02 22:59:37] 2026-05-02 20:58:49,833 | INFO     | --------------------------------------------------
[2026-05-02 22:59:37] 2026-05-02 20:58:49,833 | INFO     | PanDA job id: 7123454822
[2026-05-02 22:59:37] 2026-05-02 20:58:49,833 | INFO     | task id: 49263200
[2026-05-02 22:59:37] 2026-05-02 20:58:49,833 | INFO     | errors: (none)
[2026-05-02 22:59:37] 2026-05-02 20:58:49,833 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-02 22:59:37] 2026-05-02 20:58:49,833 | INFO     | pilot state: finished 
[2026-05-02 22:59:37] 2026-05-02 20:58:49,834 | INFO     | transexitcode: 0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,834 | INFO     | exeerrorcode: 0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,834 | INFO     | exeerrordiag: 
[2026-05-02 22:59:37] 2026-05-02 20:58:49,834 | INFO     | exitcode: 0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,834 | INFO     | exitmsg: OK
[2026-05-02 22:59:37] 2026-05-02 20:58:49,834 | INFO     | cpuconsumptiontime: 51922 s
[2026-05-02 22:59:37] 2026-05-02 20:58:49,834 | INFO     | nevents: 400
[2026-05-02 22:59:37] 2026-05-02 20:58:49,834 | INFO     | neventsw: 0
[2026-05-02 22:59:37] 2026-05-02 20:58:49,834 | INFO     | pid: 17794
[2026-05-02 22:59:37] 2026-05-02 20:58:49,834 | INFO     | pgrp: 17794
[2026-05-02 22:59:37] 2026-05-02 20:58:49,834 | INFO     | corecount: 8
[2026-05-02 22:59:37] 2026-05-02 20:58:49,834 | INFO     | event service: False
[2026-05-02 22:59:37] 2026-05-02 20:58:49,835 | INFO     | sizes: {0: 2275359, 1: 2277188, 12: 2277188, 9138: 2305562, 9139: 2314562, 9140: 2314618, 9141: 2315004}
[2026-05-02 22:59:37] 2026-05-02 20:58:49,835 | INFO     | --------------------------------------------------
[2026-05-02 22:59:37] 2026-05-02 20:58:49,835 | INFO     | 
[2026-05-02 22:59:37] 2026-05-02 20:58:49,835 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2026-05-02 22:59:37] 2026-05-02 20:58:49,857 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,857 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,857 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,857 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,857 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,857 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,857 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,858 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,858 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,858 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,858 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,858 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,858 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,858 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,858 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,858 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,858 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,859 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-02 22:59:37] 2026-05-02 20:58:49,859 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,859 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-02 22:59:37] 2026-05-02 20:58:49,859 | INFO     | job 7123454822 has completed (purged errors)
[2026-05-02 22:59:37] 2026-05-02 20:58:49,859 | INFO     | overall cleanup function is called
[2026-05-02 22:59:37] 2026-05-02 20:58:50,867 | INFO     | --- collectZombieJob: --- 10, [17794]
[2026-05-02 22:59:37] 2026-05-02 20:58:50,868 | INFO     | zombie collector waiting for pid 17794
[2026-05-02 22:59:37] 2026-05-02 20:58:50,868 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 22:59:37] 2026-05-02 20:58:50,868 | INFO     | collected zombie processes
[2026-05-02 22:59:37] 2026-05-02 20:58:50,868 | INFO     | will attempt to kill all subprocesses of pid=17794
[2026-05-02 22:59:37] 2026-05-02 20:58:50,929 | INFO     | process IDs to be killed: [17794] (in reverse order)
[2026-05-02 22:59:37] 2026-05-02 20:58:50,980 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 22:59:37] 2026-05-02 20:58:50,981 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 22:59:37] 2026-05-02 20:58:50,983 | INFO     | did not find any defunct processes belonging to 17794
[2026-05-02 22:59:37] 2026-05-02 20:58:50,984 | INFO     | did not find any defunct processes belonging to 17794
[2026-05-02 22:59:37] 2026-05-02 20:58:50,985 | INFO     | Ready for new job
[2026-05-02 22:59:37] 2026-05-02 20:58:50,986 | INFO     | ***************************************
[2026-05-02 22:59:37] 2026-05-02 20:58:50,986 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 22:59:37] 2026-05-02 20:58:50,987 | INFO     | ***************************************
[2026-05-02 22:59:37] 2026-05-02 20:58:50,987 | INFO     | 
[2026-05-02 22:59:37] 2026-05-02 20:58:50,987 | INFO     | pilot is running in a VM
[2026-05-02 22:59:37] 2026-05-02 20:58:50,987 | INFO     | architecture information:
[2026-05-02 22:59:37] 2026-05-02 20:58:50,988 | INFO     | executing command: cat /etc/os-release
[2026-05-02 22:59:37] 2026-05-02 20:58:51,003 | INFO     | cat /etc/os-release:
[2026-05-02 22:59:37] NAME="CentOS Linux"
[2026-05-02 22:59:37] VERSION="7 (Core)"
[2026-05-02 22:59:37] ID="centos"
[2026-05-02 22:59:37] ID_LIKE="rhel fedora"
[2026-05-02 22:59:37] VERSION_ID="7"
[2026-05-02 22:59:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 22:59:37] ANSI_COLOR="0;31"
[2026-05-02 22:59:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 22:59:37] HOME_URL="https://www.centos.org/"
[2026-05-02 22:59:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 22:59:37] 
[2026-05-02 22:59:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 22:59:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 22:59:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 22:59:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 22:59:37] 
[2026-05-02 22:59:37] 2026-05-02 20:58:51,004 | INFO     | ***************************************
[2026-05-02 22:59:37] 2026-05-02 20:58:51,507 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2026-05-02 22:59:37] 2026-05-02 20:58:51,523 | INFO     | sufficient remaining disk space (497894293504 B)
[2026-05-02 22:59:37] 2026-05-02 20:58:51,524 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 22:59:37] 2026-05-02 20:58:51,524 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 22:59:37] 2026-05-02 20:58:51,524 | INFO     | update_server=False
[2026-05-02 22:59:37] 2026-05-02 20:58:51,524 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 22:59:37] 2026-05-02 20:58:51,524 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 22:59:37] 2026-05-02 20:58:51,551 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 22:59:37] 2026-05-02 20:58:52,002 | INFO     | all payload control threads have been joined
[2026-05-02 22:59:37] 2026-05-02 20:58:52,003 | INFO     | all job control threads have been joined
[2026-05-02 22:59:37] 2026-05-02 20:58:52,097 | INFO     | all data control threads have been joined
[2026-05-02 22:59:37] 2026-05-02 20:58:52,145 | WARNING  | process 17794 can no longer be monitored (due to stat problems) - aborting
[2026-05-02 22:59:37] 2026-05-02 20:58:52,187 | INFO     | using path: /var/lib/boinc/slots/24/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 22:59:37] 2026-05-02 20:58:52,234 | INFO     | number of running child processes to parent process 17794: 1
[2026-05-02 22:59:37] 2026-05-02 20:58:52,234 | INFO     | maximum number of monitored processes: 6
[2026-05-02 22:59:37] 2026-05-02 20:58:52,235 | INFO     | aborting job monitoring since job object (job id=7123454822) has expired
[2026-05-02 22:59:37] 2026-05-02 20:58:52,235 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 22:59:37] 2026-05-02 20:58:52,235 | INFO     | will abort loop
[2026-05-02 22:59:37] 2026-05-02 20:58:52,530 | INFO     | [job] retrieve thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:52,530 | INFO     | [job] queue monitor thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:52,966 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:52,970 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:53,008 | INFO     | [job] control thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:53,009 | INFO     | [payload] control thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:53,081 | INFO     | [payload] failed_post thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:53,096 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:53,102 | INFO     | [data] control thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:53,240 | INFO     | [job] job monitor thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:53,306 | INFO     | [payload] validate_post thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:53,384 | INFO     | [job] validate thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:53,557 | INFO     | [data] copytool_out thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:53,860 | INFO     | [data] copytool_in thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:58:54,834 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 22:59:37] 2026-05-02 20:58:58,840 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:59:01,925 | INFO     | job.realtimelogging is not enabled
[2026-05-02 22:59:37] 2026-05-02 20:59:02,930 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 22:59:37] 2026-05-02 20:59:21,875 | INFO     | PID=13117 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-02 22:59:37] 2026-05-02 20:59:21,875 | INFO     | .. there are 2 such processes running
[2026-05-02 22:59:37] 2026-05-02 20:59:21,876 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 22:59:37] 2026-05-02 20:59:21,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 22:59:37] 2026-05-02 20:59:21,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 22:59:37] 2026-05-02 20:59:32,212 | INFO     | [monitor] cgroup control has ended
[2026-05-02 22:59:37] 2026-05-02 20:59:32,482 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140200486606656)>', '<ExcThread(monitor, started 140200038606592)>']
[2026-05-02 22:59:37] 2026-05-02 20:59:32,928 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 22:59:37] 2026-05-02 20:59:32,928 | INFO     | [monitor] control thread has ended
[2026-05-02 22:59:37] 2026-05-02 20:59:37,507 | INFO     | all workflow threads have been joined
[2026-05-02 22:59:37] 2026-05-02 20:59:37,508 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 22:59:37] 2026-05-02 20:59:37,508 | INFO     | traces error code: 0
[2026-05-02 22:59:37] 2026-05-02 20:59:37,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 22:59:37] 2026-05-02 20:59:37,642 [wrapper] ==== pilot stdout END ====
[2026-05-02 22:59:37] 2026-05-02 20:59:37,646 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 22:59:37] 2026-05-02 20:59:37,649 [wrapper] pilotpid: 13117
[2026-05-02 22:59:37] 2026-05-02 20:59:37,652 [wrapper] Pilot exit status: 0
[2026-05-02 22:59:37] 2026-05-02 20:59:37,671 [wrapper] pandaids: 7123454822
[2026-05-02 22:59:37] 2026-05-02 20:59:37,702 [wrapper] cleanup supervisor_pilot  1448 13118
[2026-05-02 22:59:37] 2026-05-02 20:59:37,708 [wrapper] Test setup, not cleaning
[2026-05-02 22:59:37] 2026-05-02 20:59:37,719 [wrapper] apfmon messages muted
[2026-05-02 22:59:37] 2026-05-02 20:59:37,726 [wrapper] ==== wrapper stdout END ====
[2026-05-02 22:59:37] 2026-05-02 20:59:37,729 [wrapper] ==== wrapper stderr END ====
[2026-05-02 22:59:37]  *** Error codes and diagnostics ***
[2026-05-02 22:59:37]     "exeErrorCode": 0,
[2026-05-02 22:59:37]     "pilotErrorCode": 0,
[2026-05-02 22:59:37]  *** Listing of results directory ***
[2026-05-02 22:59:37] total 416812
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc      5631 May  2 06:04 queuedata.json
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc    683926 May  2 06:04 pilot3.tar.gz
[2026-05-02 22:59:37] -rwx------. 1 boinc boinc     36322 May  2 06:05 runpilot2-wrapper.sh
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc       100 May  2 20:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 22:59:37] -rwxr-xr-x. 1 boinc boinc      7986 May  2 20:25 run_atlas
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc       105 May  2 20:25 job.xml
[2026-05-02 22:59:37] -rw-r--r--. 2 boinc boinc 221547808 May  2 20:25 EVNT.49263198._001953.pool.root.1
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc      6307 May  2 20:25 init_data.xml
[2026-05-02 22:59:37] -rw-r--r--. 2 boinc boinc     15667 May  2 20:25 start_atlas.sh
[2026-05-02 22:59:37] drwxrwx--x. 2 boinc boinc        68 May  2 20:25 shared
[2026-05-02 22:59:37] -rw-r--r--. 2 boinc boinc    697429 May  2 20:25 input.tar.gz
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc         0 May  2 20:25 boinc_lockfile
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc      2577 May  2 20:25 pandaJob.out
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc   1002975 May  2 20:26 agis_schedconf.cvmfs.json
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc   1508687 May  2 20:26 agis_ddmendpoints.agis.ALL.json
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc       415 May  2 20:26 workernode_map.json
[2026-05-02 22:59:37] drwx------. 5 boinc boinc      4096 May  2 20:26 pilot3
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc 198686867 May  2 22:58 HITS.49263200._089434.pool.root.1
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc       487 May  2 22:58 boinc_task_state.xml
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc        95 May  2 22:58 pilot_heartbeat.json
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc      1021 May  2 22:58 memory_monitor_summary.json
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc    353063 May  2 22:58 log.49263200._089434.job.log.tgz.1
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc      6330 May  2 22:58 heartbeat_new.json
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc      6221 May  2 22:58 heartbeat.json
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc      8192 May  2 22:59 boinc_mmap_file
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc        27 May  2 22:59 wrapper_checkpoint.txt
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc      5474 May  2 22:59 pilotlog.txt
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc    874530 May  2 22:59 log.49263200._089434.job.log.1
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc       357 May  2 22:59 output.list
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc       410 May  2 22:59 runtime_log
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc   1249280 May  2 22:59 result.tar.gz
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc      8454 May  2 22:59 runtime_log.err
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc       652 May  2 22:59 77f91d30ec83.diag
[2026-05-02 22:59:37] -rw-r--r--. 1 boinc boinc     20608 May  2 22:59 stderr.txt
[2026-05-02 22:59:37] HITS file was successfully produced:
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc 198686867 May  2 22:58 shared/HITS.pool.root.1
[2026-05-02 22:59:37]  *** Contents of shared directory: ***
[2026-05-02 22:59:37] total 412308
[2026-05-02 22:59:37] -rw-r--r--. 2 boinc boinc 221547808 May  2 20:25 ATLAS.root_0
[2026-05-02 22:59:37] -rw-r--r--. 2 boinc boinc     15667 May  2 20:25 start_atlas.sh
[2026-05-02 22:59:37] -rw-r--r--. 2 boinc boinc    697429 May  2 20:25 input.tar.gz
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc 198686867 May  2 22:58 HITS.pool.root.1
[2026-05-02 22:59:37] -rw-------. 1 boinc boinc   1249280 May  2 22:59 result.tar.gz
22:59:39 (9296): run_atlas exited; CPU time 51985.566880
22:59:39 (9296): called boinc_finish(0)

</stderr_txt>
]]>

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