Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:35:50 (304525): wrapper (7.7.26015): starting
05:35:50 (304525): wrapper: running run_atlas (--nthreads 3)
[2026-05-03 05:35:50] Arguments: --nthreads 3
[2026-05-03 05:35:50] Threads: 3
[2026-05-03 05:35:50] Checking for CVMFS
[2026-05-03 05:35:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-03 05:35:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-03 05:35:53] Running cvmfs_config stat atlas.cern.ch
[2026-05-03 05:35:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-03 05:35:53] 2.9.2.0 4049 2098 77116 159154 3 50 30951863 36864000 0 130560 0 1154054 99.988 69109 10121 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-05-03 05:35:53] CVMFS is ok
[2026-05-03 05:35:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 05:35:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 05:35:53] Further information can be found at the LHC@home message board.
[2026-05-03 05:35:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 05:35:53] Checking for apptainer binary...
[2026-05-03 05:35:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-03 05:35:53] Running /usr/bin/apptainer --version
[2026-05-03 05:35:53] apptainer version 1.4.1-1.1
[2026-05-03 05:35:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 05:35:53] cosA127
[2026-05-03 05:35:53] apptainer works
[2026-05-03 05:35:53] Set ATHENA_PROC_NUMBER=3
[2026-05-03 05:35:53] Set ATHENA_CORE_NUMBER=3
[2026-05-03 05:35:53] Starting ATLAS job with PandaID=7123339259
[2026-05-03 05:35:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-03 07:29:17]  *** The last 200 lines of the pilot log: ***
[2026-05-03 07:29:17] 2026-05-03 05:28:14,952 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-03 07:29:17] 2026-05-03 05:28:14,952 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-03 07:29:17] 2026-05-03 05:28:14,953 | INFO     | fitting pss+swap vs Time
[2026-05-03 07:29:17] 2026-05-03 05:28:14,953 | INFO     | sum of square deviations: 412686807.5
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | sum of deviations: 12042675570.999994
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | mean x (centered): 0.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | mean y: 2337132.4727272727
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | intersect: 2337132.4727272727
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | chi2: 2.3366545026139343
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | sum of square deviations: 358927660.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | sum of deviations: 11752271956.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | mean x (centered): 0.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | mean y: 2336309.466666667
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | intersect: 2336309.466666667
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | chi2: 2.3429897490776748
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | current chi2=2.3429897490776748 (change=-0.2711246552134039 %)
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | right removable region: 104
[2026-05-03 07:29:17] 2026-05-03 05:28:14,954 | INFO     | sum of square deviations: 358927660.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | sum of deviations: -8897080092.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | mean x (centered): 0.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | mean y: 2396037.838095238
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | intersect: 2396037.838095238
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | chi2: 0.39752431598364946
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | current chi2=0.39752431598364946 (change=82.98745854216133 %)
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | sum of square deviations: 310052325.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | sum of deviations: -11692610204.5
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | mean x (centered): 0.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | mean y: 2404106.91
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | intersect: 2404106.91
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | chi2: 0.10444517723372002
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | current chi2=0.10444517723372002 (change=73.7260909498638 %)
[2026-05-03 07:29:17] 2026-05-03 05:28:14,955 | INFO     | sum of square deviations: 265828240.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | sum of deviations: -7501689293.000001
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | mean x (centered): 0.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | mean y: 2389707.831578947
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | intersect: 2389707.831578947
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | chi2: 0.07644749626468328
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | current chi2=0.07644749626468328 (change=26.806102216079843 %)
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | sum of square deviations: 226022842.5
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | sum of deviations: -4922588248.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | mean x (centered): 0.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | mean y: 2379809.111111111
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | intersect: 2379809.111111111
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | chi2: 0.06644069004732422
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | current chi2=0.06644069004732422 (change=13.089776259921718 %)
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | left removable region: 20
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | sum of square deviations: 183761585.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | sum of deviations: -4503237739.499999
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | mean x (centered): 0.0
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | mean y: 2381630.273809524
[2026-05-03 07:29:17] 2026-05-03 05:28:14,956 | INFO     | intersect: 2381630.273809524
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | chi2: 0.06511849537607325
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | current memory leak: -24.51 B/s (using 84 data points, chi2=0.07)
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | could have reported an average CPU frequency of 3715 MHz (7 samples)
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | ..............................
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | . Timing measurements:
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | . get job = 0 s
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | . initial setup = 3 s
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | . payload setup = 4 s
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | . stage-in = 0 s
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | . payload execution = 6706 s
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | . stage-out = 0 s
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | . log creation = 0 s
[2026-05-03 07:29:17] 2026-05-03 05:28:14,957 | INFO     | ..............................
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | 
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | job summary report
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | --------------------------------------------------
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | PanDA job id: 7123339259
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | task id: 49645815
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | errors: (none)
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | pilot state: finished 
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | transexitcode: 0
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | exeerrorcode: 0
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | exeerrordiag: 
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | exitcode: 0
[2026-05-03 07:29:17] 2026-05-03 05:28:15,178 | INFO     | exitmsg: OK
[2026-05-03 07:29:17] 2026-05-03 05:28:15,179 | INFO     | cpuconsumptiontime: 18744 s
[2026-05-03 07:29:17] 2026-05-03 05:28:15,179 | INFO     | nevents: 400
[2026-05-03 07:29:17] 2026-05-03 05:28:15,179 | INFO     | neventsw: 0
[2026-05-03 07:29:17] 2026-05-03 05:28:15,179 | INFO     | pid: 312997
[2026-05-03 07:29:17] 2026-05-03 05:28:15,179 | INFO     | pgrp: 312997
[2026-05-03 07:29:17] 2026-05-03 05:28:15,179 | INFO     | corecount: 3
[2026-05-03 07:29:17] 2026-05-03 05:28:15,179 | INFO     | event service: False
[2026-05-03 07:29:17] 2026-05-03 05:28:15,179 | INFO     | sizes: {0: 2277210, 10: 2277210, 6714: 2304544, 6715: 2304543, 6716: 2313603, 6719: 2313659, 6721: 2313981}
[2026-05-03 07:29:17] 2026-05-03 05:28:15,179 | INFO     | --------------------------------------------------
[2026-05-03 07:29:17] 2026-05-03 05:28:15,179 | INFO     | 
[2026-05-03 07:29:17] 2026-05-03 05:28:15,179 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-03 07:29:17] 2026-05-03 05:28:15,194 | INFO     | job 7123339259 has completed (purged errors)
[2026-05-03 07:29:17] 2026-05-03 05:28:15,195 | INFO     | overall cleanup function is called
[2026-05-03 07:29:17] 2026-05-03 05:28:16,201 | INFO     | --- collectZombieJob: --- 10, [312997]
[2026-05-03 07:29:17] 2026-05-03 05:28:16,201 | INFO     | zombie collector waiting for pid 312997
[2026-05-03 07:29:17] 2026-05-03 05:28:16,201 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-03 07:29:17] 2026-05-03 05:28:16,202 | INFO     | collected zombie processes
[2026-05-03 07:29:17] 2026-05-03 05:28:16,202 | INFO     | will attempt to kill all subprocesses of pid=312997
[2026-05-03 07:29:17] 2026-05-03 05:28:16,232 | INFO     | process IDs to be killed: [312997] (in reverse order)
[2026-05-03 07:29:17] 2026-05-03 05:28:16,256 | WARNING  | found no corresponding commands to process id(s)
[2026-05-03 07:29:17] 2026-05-03 05:28:16,256 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-03 07:29:17] 2026-05-03 05:28:16,257 | INFO     | did not find any defunct processes belonging to 312997
[2026-05-03 07:29:17] 2026-05-03 05:28:16,258 | INFO     | did not find any defunct processes belonging to 312997
[2026-05-03 07:29:17] 2026-05-03 05:28:16,258 | INFO     | Ready for new job
[2026-05-03 07:29:17] 2026-05-03 05:28:16,259 | INFO     | ***************************************
[2026-05-03 07:29:17] 2026-05-03 05:28:16,259 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-03 07:29:17] 2026-05-03 05:28:16,259 | INFO     | ***************************************
[2026-05-03 07:29:17] 2026-05-03 05:28:16,259 | INFO     | 
[2026-05-03 07:29:17] 2026-05-03 05:28:16,259 | INFO     | architecture information:
[2026-05-03 07:29:17] 2026-05-03 05:28:16,259 | INFO     | executing command: cat /etc/os-release
[2026-05-03 07:29:17] 2026-05-03 05:28:16,268 | INFO     | cat /etc/os-release:
[2026-05-03 07:29:17] NAME="CentOS Linux"
[2026-05-03 07:29:17] VERSION="7 (Core)"
[2026-05-03 07:29:17] ID="centos"
[2026-05-03 07:29:17] ID_LIKE="rhel fedora"
[2026-05-03 07:29:17] VERSION_ID="7"
[2026-05-03 07:29:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-03 07:29:17] ANSI_COLOR="0;31"
[2026-05-03 07:29:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-03 07:29:17] HOME_URL="https://www.centos.org/"
[2026-05-03 07:29:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-03 07:29:17] 
[2026-05-03 07:29:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-03 07:29:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-03 07:29:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-03 07:29:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-03 07:29:17] 
[2026-05-03 07:29:17] 2026-05-03 05:28:16,268 | INFO     | ***************************************
[2026-05-03 07:29:17] 2026-05-03 05:28:16,771 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-05-03 07:29:17] 2026-05-03 05:28:16,784 | INFO     | sufficient remaining disk space (330106404864 B)
[2026-05-03 07:29:17] 2026-05-03 05:28:16,784 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-03 07:29:17] 2026-05-03 05:28:16,784 | INFO     | current server update state: UPDATING_FINAL
[2026-05-03 07:29:17] 2026-05-03 05:28:16,784 | INFO     | update_server=False
[2026-05-03 07:29:17] 2026-05-03 05:28:16,784 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-03 07:29:17] 2026-05-03 05:28:16,784 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-03 07:29:17] 2026-05-03 05:28:17,122 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-03 07:29:17] 2026-05-03 05:28:17,122 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-03 07:29:17] 2026-05-03 05:28:17,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-03 07:29:17] 2026-05-03 05:28:17,122 | INFO     | will abort loop
[2026-05-03 07:29:17] 2026-05-03 05:28:17,590 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-03 07:29:17] 2026-05-03 05:28:17,790 | INFO     | [job] retrieve thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:17,790 | INFO     | [job] queue monitor thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:17,878 | INFO     | all data control threads have been joined
[2026-05-03 07:29:17] 2026-05-03 05:28:17,990 | INFO     | [data] copytool_in thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:18,128 | INFO     | [job] job monitor thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:18,143 | INFO     | [payload] execute_payloads thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:18,191 | INFO     | all payload control threads have been joined
[2026-05-03 07:29:17] 2026-05-03 05:28:18,372 | INFO     | all job control threads have been joined
[2026-05-03 07:29:17] 2026-05-03 05:28:18,703 | INFO     | [payload] failed_post thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:18,884 | INFO     | [data] control thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:18,906 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-03 07:29:17] 2026-05-03 05:28:19,197 | INFO     | [payload] control thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:19,197 | INFO     | [job] validate thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:19,237 | INFO     | [payload] validate_post thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:19,272 | INFO     | [payload] validate_pre thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:19,274 | INFO     | [job] create_data_payload thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:19,378 | INFO     | [job] control thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:19,596 | INFO     | [data] copytool_out thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:22,913 | INFO     | [data] queue_monitor thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:27,098 | INFO     | job.realtimelogging is not enabled
[2026-05-03 07:29:17] 2026-05-03 05:28:28,104 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-03 07:29:17] 2026-05-03 05:28:47,399 | INFO     | PID=308568 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-03 07:29:17] 2026-05-03 05:28:47,400 | INFO     | found 0 job(s) in 20 queues
[2026-05-03 07:29:17] 2026-05-03 05:28:47,400 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-03 07:29:17] 2026-05-03 05:28:47,400 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-03 07:29:17] 2026-05-03 05:29:11,639 | INFO     | [monitor] cgroup control has ended
[2026-05-03 07:29:17] 2026-05-03 05:29:12,804 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140209588262720)>', '<ExcThread(monitor, started 140209224128256)>']
[2026-05-03 07:29:17] 2026-05-03 05:29:13,538 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-03 07:29:17] 2026-05-03 05:29:13,539 | INFO     | [monitor] control thread has ended
[2026-05-03 07:29:17] 2026-05-03 05:29:17,815 | INFO     | all workflow threads have been joined
[2026-05-03 07:29:17] 2026-05-03 05:29:17,815 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-03 07:29:17] 2026-05-03 05:29:17,815 | INFO     | traces error code: 0
[2026-05-03 07:29:17] 2026-05-03 05:29:17,815 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-03 07:29:17] 2026-05-03 05:29:17,865 [wrapper] ==== pilot stdout END ====
[2026-05-03 07:29:17] 2026-05-03 05:29:17,868 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-03 07:29:17] 2026-05-03 05:29:17,870 [wrapper] pilotpid: 308568
[2026-05-03 07:29:17] 2026-05-03 05:29:17,872 [wrapper] Pilot exit status: 0
[2026-05-03 07:29:17] 2026-05-03 05:29:17,880 [wrapper] pandaids: 7123339259
[2026-05-03 07:29:17] 2026-05-03 05:29:17,895 [wrapper] cleanup supervisor_pilot  318462 308569
[2026-05-03 07:29:17] 2026-05-03 05:29:17,898 [wrapper] Test setup, not cleaning
[2026-05-03 07:29:17] 2026-05-03 05:29:17,900 [wrapper] apfmon messages muted
[2026-05-03 07:29:17] 2026-05-03 05:29:17,902 [wrapper] ==== wrapper stdout END ====
[2026-05-03 07:29:17] 2026-05-03 05:29:17,905 [wrapper] ==== wrapper stderr END ====
[2026-05-03 07:29:17]  *** Error codes and diagnostics ***
[2026-05-03 07:29:17]     "exeErrorCode": 0,
[2026-05-03 07:29:17]     "pilotErrorCode": 0,
[2026-05-03 07:29:17]  *** Listing of results directory ***
[2026-05-03 07:29:17] total 418712
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc    683926 May  2 04:15 pilot3.tar.gz
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc      5631 May  2 04:15 queuedata.json
[2026-05-03 07:29:17] -rwx------ 1 boinc boinc     36322 May  2 04:16 runpilot2-wrapper.sh
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc       100 May  3 05:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-03 07:29:17] -rwxr-xr-x 1 boinc boinc      7986 May  3 05:35 run_atlas
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc       105 May  3 05:35 job.xml
[2026-05-03 07:29:17] -rw-r--r-- 2 boinc boinc 224108378 May  3 05:35 EVNT.48629115._000682.pool.root.1
[2026-05-03 07:29:17] -rw-r--r-- 2 boinc boinc    697443 May  3 05:35 input.tar.gz
[2026-05-03 07:29:17] -rw-r--r-- 2 boinc boinc     15667 May  3 05:35 start_atlas.sh
[2026-05-03 07:29:17] drwxrwx--x 2 boinc boinc      4096 May  3 05:35 shared
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc         0 May  3 05:35 boinc_setup_complete
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc      6355 May  3 05:35 init_data.xml
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc         0 May  3 05:35 boinc_lockfile
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc      2630 May  3 05:35 pandaJob.out
[2026-05-03 07:29:17] -rw------- 1 boinc boinc   1002964 May  3 05:36 agis_schedconf.cvmfs.json
[2026-05-03 07:29:17] -rw------- 1 boinc boinc   1508687 May  3 05:36 agis_ddmendpoints.agis.ALL.json
[2026-05-03 07:29:17] -rw------- 1 boinc boinc       428 May  3 05:36 workernode_map.json
[2026-05-03 07:29:17] drwx------ 5 boinc boinc      4096 May  3 05:36 pilot3
[2026-05-03 07:29:17] -rw------- 1 boinc boinc 198724636 May  3 07:27 HITS.49645815._029229.pool.root.1
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc       487 May  3 07:27 boinc_task_state.xml
[2026-05-03 07:29:17] -rw------- 1 boinc boinc      1016 May  3 07:28 memory_monitor_summary.json
[2026-05-03 07:29:17] -rw------- 1 boinc boinc    251083 May  3 07:28 log.49645815._029229.job.log.tgz.1
[2026-05-03 07:29:17] -rw------- 1 boinc boinc      6330 May  3 07:28 heartbeat_new.json
[2026-05-03 07:29:17] -rw------- 1 boinc boinc      6221 May  3 07:28 heartbeat.json
[2026-05-03 07:29:17] -rw------- 1 boinc boinc        95 May  3 07:28 pilot_heartbeat.json
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc      8192 May  3 07:28 boinc_mmap_file
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc        27 May  3 07:28 wrapper_checkpoint.txt
[2026-05-03 07:29:17] -rw------- 1 boinc boinc      5008 May  3 07:29 pilotlog.txt
[2026-05-03 07:29:17] -rw------- 1 boinc boinc    644237 May  3 07:29 log.49645815._029229.job.log.1
[2026-05-03 07:29:17] -rw------- 1 boinc boinc       357 May  3 07:29 output.list
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc       410 May  3 07:29 runtime_log
[2026-05-03 07:29:17] -rw------- 1 boinc boinc    911360 May  3 07:29 result.tar.gz
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc      8524 May  3 07:29 runtime_log.err
[2026-05-03 07:29:17] -rw------- 1 boinc boinc       659 May  3 07:29 5e726d60b541.diag
[2026-05-03 07:29:17] -rw-r--r-- 1 boinc boinc     20762 May  3 07:29 stderr.txt
[2026-05-03 07:29:17] HITS file was successfully produced:
[2026-05-03 07:29:17] -rw------- 1 boinc boinc 198724636 May  3 07:27 shared/HITS.pool.root.1
[2026-05-03 07:29:17]  *** Contents of shared directory: ***
[2026-05-03 07:29:17] total 414524
[2026-05-03 07:29:17] -rw-r--r-- 2 boinc boinc 224108378 May  3 05:35 ATLAS.root_0
[2026-05-03 07:29:17] -rw-r--r-- 2 boinc boinc    697443 May  3 05:35 input.tar.gz
[2026-05-03 07:29:17] -rw-r--r-- 2 boinc boinc     15667 May  3 05:35 start_atlas.sh
[2026-05-03 07:29:17] -rw------- 1 boinc boinc 198724636 May  3 07:27 HITS.pool.root.1
[2026-05-03 07:29:17] -rw------- 1 boinc boinc    911360 May  3 07:29 result.tar.gz
07:29:19 (304525): run_atlas exited; CPU time 18771.006398
07:29:19 (304525): called boinc_finish(0)

</stderr_txt>
]]>

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