Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:31:54 (857368): wrapper (7.7.26015): starting
01:31:54 (857368): wrapper: running run_atlas (--nthreads 4)
[2026-05-05 01:31:54] Arguments: --nthreads 4
[2026-05-05 01:31:54] Threads: 4
[2026-05-05 01:31:54] Checking for CVMFS
[2026-05-05 01:31:54] No cvmfs_config command found, will try listing directly
[2026-05-05 01:31:54] CVMFS is ok
[2026-05-05 01:31:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-05 01:31:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-05 01:31:54] Further information can be found at the LHC@home message board.
[2026-05-05 01:31:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-05 01:31:54] Checking for apptainer binary...
[2026-05-05 01:31:54] which: no apptainer in ((null))
[2026-05-05 01:31:54] apptainer is not installed, using version from CVMFS
[2026-05-05 01:31:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-05 01:31:55] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot128/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-05-05 01:31:55] apptainer works
[2026-05-05 01:31:55] Set ATHENA_PROC_NUMBER=4
[2026-05-05 01:31:55] Set ATHENA_CORE_NUMBER=4
[2026-05-05 01:31:55] Starting ATLAS job with PandaID=7122770818
[2026-05-05 01:31:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot128/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-05 05:13:09]  *** The last 200 lines of the pilot log: ***
[2026-05-05 05:13:09] 2026-05-05 03:12:14,395 | INFO     | job 7122770818 has state=finished
[2026-05-05 05:13:09] 2026-05-05 03:12:14,395 | INFO     | preparing for final server update for job 7122770818 in state='finished'
[2026-05-05 05:13:09] 2026-05-05 03:12:14,396 | INFO     | reading metadata from: /var/lib/boinc/var/slot128/slots/1/PanDA_Pilot-7122770818/jobReport.json
[2026-05-05 05:13:09] 2026-05-05 03:12:14,398 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot128/slots/1/workernode_map.json
[2026-05-05 05:13:09] 2026-05-05 03:12:14,399 | INFO     | this job has now completed (state=finished)
[2026-05-05 05:13:09] 2026-05-05 03:12:14,399 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-05 05:13:09] 2026-05-05 03:12:14,399 | INFO     | log transfer has been attempted: DONE
[2026-05-05 05:13:09] 2026-05-05 03:12:14,399 | INFO     | job 7122770818 has finished - writing final server update
[2026-05-05 05:13:09] 2026-05-05 03:12:14,399 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_816492/.job.ad'
[2026-05-05 05:13:09] 2026-05-05 03:12:14,400 | INFO     | total number of processed events: 400 (read)
[2026-05-05 05:13:09] 2026-05-05 03:12:14,423 | INFO     | using path: /var/lib/boinc/var/slot128/slots/1/PanDA_Pilot-7122770818/memory_monitor_summary.json (trf name=prmon)
[2026-05-05 05:13:09] 2026-05-05 03:12:14,424 | INFO     | extracted standard info from prmon json
[2026-05-05 05:13:09] 2026-05-05 03:12:14,424 | INFO     | extracted standard memory fields from prmon json
[2026-05-05 05:13:09] 2026-05-05 03:12:14,424 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-05 05:13:09] 2026-05-05 03:12:14,424 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-05 05:13:09] 2026-05-05 03:12:14,428 | INFO     | fitting pss+swap vs Time
[2026-05-05 05:13:09] 2026-05-05 03:12:14,429 | INFO     | sum of square deviations: 3081657780.0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,430 | INFO     | sum of deviations: 25754878503.0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,430 | INFO     | mean x (centered): 0.0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,430 | INFO     | mean y: 2325001.646511628
[2026-05-05 05:13:09] 2026-05-05 03:12:14,430 | INFO     | intersect: 2325001.646511628
[2026-05-05 05:13:09] 2026-05-05 03:12:14,431 | INFO     | chi2: 1.5105036987124607
[2026-05-05 05:13:09] 2026-05-05 03:12:14,431 | INFO     | sum of square deviations: 2871616632.5
[2026-05-05 05:13:09] 2026-05-05 03:12:14,432 | INFO     | sum of deviations: 24857189967.5
[2026-05-05 05:13:09] 2026-05-05 03:12:14,432 | INFO     | mean x (centered): 0.0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,433 | INFO     | mean y: 2324349.880952381
[2026-05-05 05:13:09] 2026-05-05 03:12:14,433 | INFO     | intersect: 2324349.880952381
[2026-05-05 05:13:09] 2026-05-05 03:12:14,433 | INFO     | chi2: 1.5114063257949963
[2026-05-05 05:13:09] 2026-05-05 03:12:14,433 | INFO     | current chi2=1.5114063257949963 (change=-0.05975669462478146 %)
[2026-05-05 05:13:09] 2026-05-05 03:12:14,433 | INFO     | right removable region: 209
[2026-05-05 05:13:09] 2026-05-05 03:12:14,433 | INFO     | sum of square deviations: 2871616632.5
[2026-05-05 05:13:09] 2026-05-05 03:12:14,435 | INFO     | sum of deviations: -5250196799.999999
[2026-05-05 05:13:09] 2026-05-05 03:12:14,435 | INFO     | mean x (centered): 0.0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,435 | INFO     | mean y: 2347269.6666666665
[2026-05-05 05:13:09] 2026-05-05 03:12:14,435 | INFO     | intersect: 2347269.6666666665
[2026-05-05 05:13:09] 2026-05-05 03:12:14,435 | INFO     | chi2: 0.014655197547181344
[2026-05-05 05:13:09] 2026-05-05 03:12:14,435 | INFO     | current chi2=0.014655197547181344 (change=99.02978075726175 %)
[2026-05-05 05:13:09] 2026-05-05 03:12:14,436 | INFO     | sum of square deviations: 2671343110.0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,437 | INFO     | sum of deviations: -5442395722.000001
[2026-05-05 05:13:09] 2026-05-05 03:12:14,437 | INFO     | mean x (centered): 0.0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,437 | INFO     | mean y: 2347399.868292683
[2026-05-05 05:13:09] 2026-05-05 03:12:14,437 | INFO     | intersect: 2347399.868292683
[2026-05-05 05:13:09] 2026-05-05 03:12:14,438 | INFO     | chi2: 0.01116761546620987
[2026-05-05 05:13:09] 2026-05-05 03:12:14,438 | INFO     | current chi2=0.01116761546620987 (change=23.79757809298344 %)
[2026-05-05 05:13:09] 2026-05-05 03:12:14,438 | INFO     | left removable region: 10
[2026-05-05 05:13:09] 2026-05-05 03:12:14,438 | INFO     | sum of square deviations: 2443580700.0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,439 | INFO     | sum of deviations: -5627696398.0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,440 | INFO     | mean x (centered): 0.0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,440 | INFO     | mean y: 2347251.1005025124
[2026-05-05 05:13:09] 2026-05-05 03:12:14,440 | INFO     | intersect: 2347251.1005025124
[2026-05-05 05:13:09] 2026-05-05 03:12:14,440 | INFO     | chi2: 0.010798983590405306
[2026-05-05 05:13:09] 2026-05-05 03:12:14,440 | INFO     | current memory leak: -2.30 B/s (using 199 data points, chi2=0.01)
[2026-05-05 05:13:09] 2026-05-05 03:12:14,441 | INFO     | could have reported an average CPU frequency of 2657 MHz (11 samples)
[2026-05-05 05:13:09] 2026-05-05 03:12:14,441 | INFO     | ..............................
[2026-05-05 05:13:09] 2026-05-05 03:12:14,441 | INFO     | . Timing measurements:
[2026-05-05 05:13:09] 2026-05-05 03:12:14,441 | INFO     | . get job = 0 s
[2026-05-05 05:13:09] 2026-05-05 03:12:14,441 | INFO     | . initial setup = 18 s
[2026-05-05 05:13:09] 2026-05-05 03:12:14,441 | INFO     | . payload setup = 26 s
[2026-05-05 05:13:09] 2026-05-05 03:12:14,441 | INFO     | . stage-in = 0 s
[2026-05-05 05:13:09] 2026-05-05 03:12:14,441 | INFO     | . payload execution = 13129 s
[2026-05-05 05:13:09] 2026-05-05 03:12:14,441 | INFO     | . stage-out = 1 s
[2026-05-05 05:13:09] 2026-05-05 03:12:14,441 | INFO     | . log creation = 0 s
[2026-05-05 05:13:09] 2026-05-05 03:12:14,441 | INFO     | ..............................
[2026-05-05 05:13:09] 2026-05-05 03:12:14,535 | INFO     | 
[2026-05-05 05:13:09] 2026-05-05 03:12:14,536 | INFO     | job summary report
[2026-05-05 05:13:09] 2026-05-05 03:12:14,536 | INFO     | --------------------------------------------------
[2026-05-05 05:13:09] 2026-05-05 03:12:14,536 | INFO     | PanDA job id: 7122770818
[2026-05-05 05:13:09] 2026-05-05 03:12:14,536 | INFO     | task id: 49645815
[2026-05-05 05:13:09] 2026-05-05 03:12:14,536 | INFO     | errors: (none)
[2026-05-05 05:13:09] 2026-05-05 03:12:14,536 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-05 05:13:09] 2026-05-05 03:12:14,536 | INFO     | pilot state: finished 
[2026-05-05 05:13:09] 2026-05-05 03:12:14,537 | INFO     | transexitcode: 0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,537 | INFO     | exeerrorcode: 0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,537 | INFO     | exeerrordiag: 
[2026-05-05 05:13:09] 2026-05-05 03:12:14,537 | INFO     | exitcode: 0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,537 | INFO     | exitmsg: OK
[2026-05-05 05:13:09] 2026-05-05 03:12:14,537 | INFO     | cpuconsumptiontime: 49442 s
[2026-05-05 05:13:09] 2026-05-05 03:12:14,537 | INFO     | nevents: 400
[2026-05-05 05:13:09] 2026-05-05 03:12:14,537 | INFO     | neventsw: 0
[2026-05-05 05:13:09] 2026-05-05 03:12:14,537 | INFO     | pid: 867045
[2026-05-05 05:13:09] 2026-05-05 03:12:14,537 | INFO     | pgrp: 867045
[2026-05-05 05:13:09] 2026-05-05 03:12:14,537 | INFO     | corecount: 4
[2026-05-05 05:13:09] 2026-05-05 03:12:14,537 | INFO     | event service: False
[2026-05-05 05:13:09] 2026-05-05 03:12:14,538 | INFO     | sizes: {0: 2270866, 1: 2272294, 11: 2272322, 13160: 2303161, 13162: 2312239, 13163: 2312377}
[2026-05-05 05:13:09] 2026-05-05 03:12:14,538 | INFO     | --------------------------------------------------
[2026-05-05 05:13:09] 2026-05-05 03:12:14,538 | INFO     | 
[2026-05-05 05:13:09] 2026-05-05 03:12:14,538 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot128/slots/1
[2026-05-05 05:13:09] 2026-05-05 03:12:14,567 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,568 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,568 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,568 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,568 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,568 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,568 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,568 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,568 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,569 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,569 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,569 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,569 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,569 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,569 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,569 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,569 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,569 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-05 05:13:09] 2026-05-05 03:12:14,569 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,570 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-05 05:13:09] 2026-05-05 03:12:14,570 | INFO     | job 7122770818 has completed (purged errors)
[2026-05-05 05:13:09] 2026-05-05 03:12:14,570 | INFO     | overall cleanup function is called
[2026-05-05 05:13:09] 2026-05-05 03:12:15,579 | INFO     | --- collectZombieJob: --- 10, [867045]
[2026-05-05 05:13:09] 2026-05-05 03:12:15,579 | INFO     | zombie collector waiting for pid 867045
[2026-05-05 05:13:09] 2026-05-05 03:12:15,579 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-05 05:13:09] 2026-05-05 03:12:15,579 | INFO     | collected zombie processes
[2026-05-05 05:13:09] 2026-05-05 03:12:15,579 | INFO     | will attempt to kill all subprocesses of pid=867045
[2026-05-05 05:13:09] 2026-05-05 03:12:16,405 | INFO     | PID=861579 has CPU usage=21.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-05 05:13:09] 2026-05-05 03:12:16,405 | INFO     | .. there are 24 such processes running
[2026-05-05 05:13:09] 2026-05-05 03:12:16,769 | INFO     | process IDs to be killed: [867045] (in reverse order)
[2026-05-05 05:13:09] 2026-05-05 03:12:17,156 | WARNING  | found no corresponding commands to process id(s)
[2026-05-05 05:13:09] 2026-05-05 03:12:17,156 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-05 05:13:09] 2026-05-05 03:12:17,210 | INFO     | did not find any defunct processes belonging to 867045
[2026-05-05 05:13:09] 2026-05-05 03:12:17,240 | INFO     | did not find any defunct processes belonging to 867045
[2026-05-05 05:13:09] 2026-05-05 03:12:17,241 | INFO     | Ready for new job
[2026-05-05 05:13:09] 2026-05-05 03:12:17,243 | INFO     | ***************************************
[2026-05-05 05:13:09] 2026-05-05 03:12:17,243 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-05 05:13:09] 2026-05-05 03:12:17,243 | INFO     | ***************************************
[2026-05-05 05:13:09] 2026-05-05 03:12:17,243 | INFO     | 
[2026-05-05 05:13:09] 2026-05-05 03:12:17,252 | INFO     | architecture information:
[2026-05-05 05:13:09] 2026-05-05 03:12:17,252 | INFO     | executing command: cat /etc/os-release
[2026-05-05 05:13:09] 2026-05-05 03:12:17,278 | INFO     | cat /etc/os-release:
[2026-05-05 05:13:09] NAME="CentOS Linux"
[2026-05-05 05:13:09] VERSION="7 (Core)"
[2026-05-05 05:13:09] ID="centos"
[2026-05-05 05:13:09] ID_LIKE="rhel fedora"
[2026-05-05 05:13:09] VERSION_ID="7"
[2026-05-05 05:13:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-05 05:13:09] ANSI_COLOR="0;31"
[2026-05-05 05:13:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-05 05:13:09] HOME_URL="https://www.centos.org/"
[2026-05-05 05:13:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-05 05:13:09] 
[2026-05-05 05:13:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-05 05:13:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-05 05:13:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-05 05:13:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-05 05:13:09] 
[2026-05-05 05:13:09] 2026-05-05 03:12:17,278 | INFO     | ***************************************
[2026-05-05 05:13:09] 2026-05-05 03:12:17,782 | INFO     | executing command: df -mP /var/lib/boinc/var/slot128/slots/1
[2026-05-05 05:13:09] 2026-05-05 03:12:17,808 | INFO     | sufficient remaining disk space (235246977024 B)
[2026-05-05 05:13:09] 2026-05-05 03:12:17,809 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-05 05:13:09] 2026-05-05 03:12:17,809 | INFO     | current server update state: UPDATING_FINAL
[2026-05-05 05:13:09] 2026-05-05 03:12:17,809 | INFO     | update_server=False
[2026-05-05 05:13:09] 2026-05-05 03:12:17,809 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-05 05:13:09] 2026-05-05 03:12:18,020 | INFO     | all payload control threads have been joined
[2026-05-05 05:13:09] 2026-05-05 03:12:18,521 | INFO     | all data control threads have been joined
[2026-05-05 05:13:09] 2026-05-05 03:12:18,581 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-05 05:13:09] 2026-05-05 03:12:18,581 | INFO     | aborting loop
[2026-05-05 05:13:09] 2026-05-05 03:12:18,815 | INFO     | [job] retrieve thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:18,975 | INFO     | [job] validate thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:19,025 | INFO     | [payload] control thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:19,081 | INFO     | [job] create_data_payload thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:19,097 | INFO     | all job control threads have been joined
[2026-05-05 05:13:09] 2026-05-05 03:12:19,143 | INFO     | [payload] execute_payloads thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:19,247 | INFO     | [payload] validate_pre thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:19,283 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-05 05:13:09] 2026-05-05 03:12:19,485 | INFO     | [payload] failed_post thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:19,527 | INFO     | [data] control thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:19,546 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-05 05:13:09] 2026-05-05 03:12:19,586 | INFO     | [job] job monitor thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:19,635 | INFO     | [payload] validate_post thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:19,697 | INFO     | [data] copytool_in thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:20,102 | INFO     | [job] control thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:20,197 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-05 05:13:09] 2026-05-05 03:12:20,551 | INFO     | [job] queue monitor thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:21,288 | INFO     | [data] copytool_out thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:24,203 | INFO     | [data] queue_monitor thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:28,292 | INFO     | job.realtimelogging is not enabled
[2026-05-05 05:13:09] 2026-05-05 03:12:29,297 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-05 05:13:09] 2026-05-05 03:12:49,491 | INFO     | PID=861579 has CPU usage=6.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-05 05:13:09] 2026-05-05 03:12:49,491 | INFO     | .. there are 23 such processes running
[2026-05-05 05:13:09] 2026-05-05 03:12:49,491 | INFO     | found 0 job(s) in 20 queues
[2026-05-05 05:13:09] 2026-05-05 03:12:49,491 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-05 05:13:09] 2026-05-05 03:12:49,491 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-05 05:13:09] 2026-05-05 03:13:01,993 | INFO     | [monitor] cgroup control has ended
[2026-05-05 05:13:09] 2026-05-05 03:13:03,438 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22734095038272)>', '<ExcThread(monitor, started 22733777753856)>']
[2026-05-05 05:13:09] 2026-05-05 03:13:03,560 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-05 05:13:09] 2026-05-05 03:13:03,561 | INFO     | [monitor] control thread has ended
[2026-05-05 05:13:09] 2026-05-05 03:13:08,462 | INFO     | all workflow threads have been joined
[2026-05-05 05:13:09] 2026-05-05 03:13:08,463 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-05 05:13:09] 2026-05-05 03:13:08,463 | INFO     | traces error code: 0
[2026-05-05 05:13:09] 2026-05-05 03:13:08,463 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-05 05:13:09] 2026-05-05 03:13:08,620 [wrapper] ==== pilot stdout END ====
[2026-05-05 05:13:09] 2026-05-05 03:13:08,625 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-05 05:13:09] 2026-05-05 03:13:08,630 [wrapper] pilotpid: 861579
[2026-05-05 05:13:09] 2026-05-05 03:13:08,635 [wrapper] Pilot exit status: 0
[2026-05-05 05:13:09] 2026-05-05 03:13:08,651 [wrapper] pandaids: 7122770818
[2026-05-05 05:13:09] 2026-05-05 03:13:08,865 [wrapper] cleanup supervisor_pilot 1529164 861580
[2026-05-05 05:13:09] 2026-05-05 03:13:08,869 [wrapper] Test setup, not cleaning
[2026-05-05 05:13:09] 2026-05-05 03:13:08,879 [wrapper] apfmon messages muted
[2026-05-05 05:13:09] 2026-05-05 03:13:08,884 [wrapper] ==== wrapper stdout END ====
[2026-05-05 05:13:09] 2026-05-05 03:13:08,889 [wrapper] ==== wrapper stderr END ====
[2026-05-05 05:13:09]  *** Error codes and diagnostics ***
[2026-05-05 05:13:09]     "exeErrorCode": 0,
[2026-05-05 05:13:09]     "pilotErrorCode": 0,
[2026-05-05 05:13:09]  *** Listing of results directory ***
[2026-05-05 05:13:09] total 418396
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc    683926 May  1 22:25 pilot3.tar.gz
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc      5631 May  1 22:27 queuedata.json
[2026-05-05 05:13:09] -rwx------. 1 boinc boinc     36322 May  1 22:27 runpilot2-wrapper.sh
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc       100 May  5 01:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-05 05:13:09] -rwxr-xr-x. 1 boinc boinc      7986 May  5 01:31 run_atlas
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc       105 May  5 01:31 job.xml
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc      6541 May  5 01:31 init_data.xml
[2026-05-05 05:13:09] -rw-r--r--. 2 boinc boinc 222811244 May  5 01:31 EVNT.48629115._000400.pool.root.1
[2026-05-05 05:13:09] -rw-r--r--. 2 boinc boinc     15667 May  5 01:31 start_atlas.sh
[2026-05-05 05:13:09] drwxrwx--x. 2 boinc boinc      4096 May  5 01:31 shared
[2026-05-05 05:13:09] -rw-r--r--. 2 boinc boinc    697443 May  5 01:31 input.tar.gz
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc         0 May  5 01:31 boinc_lockfile
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc      2627 May  5 01:31 pandaJob.out
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc   1002597 May  5 01:32 agis_schedconf.cvmfs.json
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc       444 May  5 01:32 workernode_map.json
[2026-05-05 05:13:09] drwx------. 5 boinc boinc      4096 May  5 01:32 pilot3
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc 198366485 May  5 05:11 HITS.49645815._025069.pool.root.1
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc       489 May  5 05:11 boinc_task_state.xml
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc        95 May  5 05:11 pilot_heartbeat.json
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc      1033 May  5 05:12 memory_monitor_summary.json
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc   1505918 May  5 05:12 agis_ddmendpoints.agis.ALL.json
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc    342512 May  5 05:12 log.49645815._025069.job.log.tgz.1
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc      6383 May  5 05:12 heartbeat_new.json
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc      6274 May  5 05:12 heartbeat.json
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc      8192 May  5 05:12 boinc_mmap_file
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc        28 May  5 05:12 wrapper_checkpoint.txt
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc      4905 May  5 05:13 pilotlog.txt
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc   1221132 May  5 05:13 log.49645815._025069.job.log.1
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc       357 May  5 05:13 output.list
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc       410 May  5 05:13 runtime_log
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc   1576960 May  5 05:13 result.tar.gz
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc      8845 May  5 05:13 runtime_log.err
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc       666 May  5 05:13 0cb7aece2022.diag
[2026-05-05 05:13:09] -rw-r--r--. 1 boinc boinc     21105 May  5 05:13 stderr.txt
[2026-05-05 05:13:09] HITS file was successfully produced:
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc 198366485 May  5 05:11 shared/HITS.pool.root.1
[2026-05-05 05:13:09]  *** Contents of shared directory: ***
[2026-05-05 05:13:09] total 413560
[2026-05-05 05:13:09] -rw-r--r--. 2 boinc boinc 222811244 May  5 01:31 ATLAS.root_0
[2026-05-05 05:13:09] -rw-r--r--. 2 boinc boinc     15667 May  5 01:31 start_atlas.sh
[2026-05-05 05:13:09] -rw-r--r--. 2 boinc boinc    697443 May  5 01:31 input.tar.gz
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc 198366485 May  5 05:11 HITS.pool.root.1
[2026-05-05 05:13:09] -rw-------. 1 boinc boinc   1576960 May  5 05:13 result.tar.gz
05:13:10 (857368): run_atlas exited; CPU time 50233.147947
05:13:10 (857368): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN