Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:15:55 (1852390): wrapper (7.7.26015): starting
04:15:55 (1852390): wrapper: running run_atlas (--nthreads 12)
[2026-05-03 04:15:55] Arguments: --nthreads 12
[2026-05-03 04:15:55] Threads: 12
[2026-05-03 04:15:55] Checking for CVMFS
[2026-05-03 04:15:55] No cvmfs_config command found, will try listing directly
[2026-05-03 04:15:55] CVMFS is ok
[2026-05-03 04:15:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 04:15:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 04:15:55] Further information can be found at the LHC@home message board.
[2026-05-03 04:15:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 04:15:55] Checking for apptainer binary...
[2026-05-03 04:15:55] which: no apptainer in ((null))
[2026-05-03 04:15:55] apptainer is not installed, using version from CVMFS
[2026-05-03 04:15:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 04:15:55] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot84/slots/10/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-05-03 04:15:55] apptainer works
[2026-05-03 04:15:55] Set ATHENA_PROC_NUMBER=12
[2026-05-03 04:15:55] Set ATHENA_CORE_NUMBER=12
[2026-05-03 04:15:55] Starting ATLAS job with PandaID=7123319315
[2026-05-03 04:15:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot84/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-03 04:53:16]  *** The last 200 lines of the pilot log: ***
[2026-05-03 04:53:16]  domain=
[2026-05-03 04:53:16]  filesize=354301
[2026-05-03 04:53:16]  filetype=log
[2026-05-03 04:53:16]  guid=44a489ba-1c93-4040-9912-082d98805b82
[2026-05-03 04:53:16]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-03 04:53:16]  is_altstaged=None
[2026-05-03 04:53:16]  is_tar=False
[2026-05-03 04:53:16]  lfn=log.49645815._028704.job.log.tgz.1
[2026-05-03 04:53:16]  mtime=0
[2026-05-03 04:53:16]  protocol_id=None
[2026-05-03 04:53:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-03 04:53:16]  replicas=None
[2026-05-03 04:53:16]  scope=mc23_13p6TeV
[2026-05-03 04:53:16]  status=None
[2026-05-03 04:53:16]  status_code=0
[2026-05-03 04:53:16]  storage_token=
[2026-05-03 04:53:16]  surl=/var/lib/boinc/var/slot84/slots/10/PanDA_Pilot-7123319315/log.49645815._028704.job.log.tgz.1
[2026-05-03 04:53:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/bf/log.49645815._028704.job.log.tgz.1
[2026-05-03 04:53:16]  workdir=None
[2026-05-03 04:53:16] ]
[2026-05-03 04:53:16] 2026-05-03 02:52:03,471 | INFO     | transferring file log.49645815._028704.job.log.tgz.1 from /var/lib/boinc/var/slot84/slots/10/PanDA_Pilot-7123319315/log.49645815._028704.job.log.tgz.1 to /var/lib/
[2026-05-03 04:53:16] 2026-05-03 02:52:03,472 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot84/slots/10/PanDA_Pilot-7123319315/log.49645815._028704.job.log.tgz.1 /var/lib/boinc/var/slot84/slots/10/
[2026-05-03 04:53:16] 2026-05-03 02:52:03,486 | INFO     | adding to output.list: log.49645815._028704.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/bf/log.49645815._028704.job.log.tg
[2026-05-03 04:53:16] 2026-05-03 02:52:03,487 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-03 04:53:16] 2026-05-03 02:52:03,487 | INFO     | summary of transferred files:
[2026-05-03 04:53:16] 2026-05-03 02:52:03,487 | INFO     |  -- lfn=log.49645815._028704.job.log.tgz.1, status_code=0, status=transferred
[2026-05-03 04:53:16] 2026-05-03 02:52:03,487 | INFO     | stage-out finished correctly
[2026-05-03 04:53:16] 2026-05-03 02:52:05,706 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-03 04:53:16] 2026-05-03 02:52:05,793 | INFO     | monitor loop #166: job 0:7123319315 is in state 'finished'
[2026-05-03 04:53:16] 2026-05-03 02:52:05,793 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-03 04:53:16] 2026-05-03 02:52:07,802 | INFO     | PID=1856982 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-03 04:53:16] 2026-05-03 02:52:07,803 | INFO     | .. there are 16 such processes running
[2026-05-03 04:53:16] 2026-05-03 02:52:07,814 | INFO     | job 7123319315 has state=finished
[2026-05-03 04:53:16] 2026-05-03 02:52:07,814 | INFO     | preparing for final server update for job 7123319315 in state='finished'
[2026-05-03 04:53:16] 2026-05-03 02:52:07,814 | INFO     | reading metadata from: /var/lib/boinc/var/slot84/slots/10/PanDA_Pilot-7123319315/jobReport.json
[2026-05-03 04:53:16] 2026-05-03 02:52:07,816 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot84/slots/10/workernode_map.json
[2026-05-03 04:53:16] 2026-05-03 02:52:07,816 | INFO     | this job has now completed (state=finished)
[2026-05-03 04:53:16] 2026-05-03 02:52:07,816 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-03 04:53:16] 2026-05-03 02:52:07,816 | INFO     | log transfer has been attempted: DONE
[2026-05-03 04:53:16] 2026-05-03 02:52:07,816 | INFO     | job 7123319315 has finished - writing final server update
[2026-05-03 04:53:16] 2026-05-03 02:52:07,816 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1988973/.job.ad'
[2026-05-03 04:53:16] 2026-05-03 02:52:07,816 | INFO     | total number of processed events: 400 (read)
[2026-05-03 04:53:16] 2026-05-03 02:52:07,834 | INFO     | using path: /var/lib/boinc/var/slot84/slots/10/PanDA_Pilot-7123319315/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 04:53:16] 2026-05-03 02:52:07,835 | INFO     | extracted standard info from prmon json
[2026-05-03 04:53:16] 2026-05-03 02:52:07,835 | INFO     | extracted standard memory fields from prmon json
[2026-05-03 04:53:16] 2026-05-03 02:52:07,835 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-03 04:53:16] 2026-05-03 02:52:07,835 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-03 04:53:16] 2026-05-03 02:52:07,835 | INFO     | fitting pss+swap vs Time
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | sum of square deviations: 6798267.0
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | sum of deviations: -146519773.5
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | mean x (centered): 0.0
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | mean y: 2731358.3214285714
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | intersect: 2731358.3214285714
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | chi2: 0.0001106940648097297
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | current memory leak: -21.55 B/s (using 28 data points, chi2=0.00)
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | could have reported an average CPU frequency of 3612 MHz (5 samples)
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | ..............................
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | . Timing measurements:
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | . get job = 0 s
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | . initial setup = 4 s
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | . payload setup = 6 s
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | . stage-in = 0 s
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | . payload execution = 2135 s
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | . stage-out = 0 s
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | . log creation = 0 s
[2026-05-03 04:53:16] 2026-05-03 02:52:07,836 | INFO     | ..............................
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | 
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | job summary report
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | --------------------------------------------------
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | PanDA job id: 7123319315
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | task id: 49645815
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | errors: (none)
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | pilot state: finished 
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | transexitcode: 0
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | exeerrorcode: 0
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | exeerrordiag: 
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | exitcode: 0
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | exitmsg: OK
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | cpuconsumptiontime: 22560 s
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | nevents: 400
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | neventsw: 0
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | pid: 1869843
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | pgrp: 1869843
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | corecount: 12
[2026-05-03 04:53:16] 2026-05-03 02:52:07,887 | INFO     | event service: False
[2026-05-03 04:53:16] 2026-05-03 02:52:07,888 | INFO     | sizes: {0: 2275475, 1: 2277247, 11: 2277247, 2145: 2302342, 2146: 2311419, 2148: 2311419, 2151: 2311773}
[2026-05-03 04:53:16] 2026-05-03 02:52:07,888 | INFO     | --------------------------------------------------
[2026-05-03 04:53:16] 2026-05-03 02:52:07,888 | INFO     | 
[2026-05-03 04:53:16] 2026-05-03 02:52:07,888 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot84/slots/10
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,903 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,904 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,904 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-03 04:53:16] 2026-05-03 02:52:07,904 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,904 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-03 04:53:16] 2026-05-03 02:52:07,904 | INFO     | job 7123319315 has completed (purged errors)
[2026-05-03 04:53:16] 2026-05-03 02:52:07,904 | INFO     | overall cleanup function is called
[2026-05-03 04:53:16] 2026-05-03 02:52:08,911 | INFO     | --- collectZombieJob: --- 10, [1869843]
[2026-05-03 04:53:16] 2026-05-03 02:52:08,911 | INFO     | zombie collector waiting for pid 1869843
[2026-05-03 04:53:16] 2026-05-03 02:52:08,911 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-03 04:53:16] 2026-05-03 02:52:08,911 | INFO     | collected zombie processes
[2026-05-03 04:53:16] 2026-05-03 02:52:08,911 | INFO     | will attempt to kill all subprocesses of pid=1869843
[2026-05-03 04:53:16] 2026-05-03 02:52:09,192 | INFO     | process IDs to be killed: [1869843] (in reverse order)
[2026-05-03 04:53:16] 2026-05-03 02:52:09,333 | WARNING  | found no corresponding commands to process id(s)
[2026-05-03 04:53:16] 2026-05-03 02:52:09,333 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-03 04:53:16] 2026-05-03 02:52:09,356 | INFO     | did not find any defunct processes belonging to 1869843
[2026-05-03 04:53:16] 2026-05-03 02:52:09,377 | INFO     | did not find any defunct processes belonging to 1869843
[2026-05-03 04:53:16] 2026-05-03 02:52:09,378 | INFO     | Ready for new job
[2026-05-03 04:53:16] 2026-05-03 02:52:09,378 | INFO     | ***************************************
[2026-05-03 04:53:16] 2026-05-03 02:52:09,379 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-03 04:53:16] 2026-05-03 02:52:09,379 | INFO     | ***************************************
[2026-05-03 04:53:16] 2026-05-03 02:52:09,379 | INFO     | 
[2026-05-03 04:53:16] 2026-05-03 02:52:09,384 | INFO     | architecture information:
[2026-05-03 04:53:16] 2026-05-03 02:52:09,384 | INFO     | executing command: cat /etc/os-release
[2026-05-03 04:53:16] 2026-05-03 02:52:09,396 | INFO     | cat /etc/os-release:
[2026-05-03 04:53:16] NAME="CentOS Linux"
[2026-05-03 04:53:16] VERSION="7 (Core)"
[2026-05-03 04:53:16] ID="centos"
[2026-05-03 04:53:16] ID_LIKE="rhel fedora"
[2026-05-03 04:53:16] VERSION_ID="7"
[2026-05-03 04:53:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-03 04:53:16] ANSI_COLOR="0;31"
[2026-05-03 04:53:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-03 04:53:16] HOME_URL="https://www.centos.org/"
[2026-05-03 04:53:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-03 04:53:16] 
[2026-05-03 04:53:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-03 04:53:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-03 04:53:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-03 04:53:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-03 04:53:16] 
[2026-05-03 04:53:16] 2026-05-03 02:52:09,396 | INFO     | ***************************************
[2026-05-03 04:53:16] 2026-05-03 02:52:09,899 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/10
[2026-05-03 04:53:16] 2026-05-03 02:52:09,912 | INFO     | sufficient remaining disk space (268466913280 B)
[2026-05-03 04:53:16] 2026-05-03 02:52:09,912 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-03 04:53:16] 2026-05-03 02:52:09,912 | INFO     | current server update state: UPDATING_FINAL
[2026-05-03 04:53:16] 2026-05-03 02:52:09,912 | INFO     | update_server=False
[2026-05-03 04:53:16] 2026-05-03 02:52:09,912 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-03 04:53:16] 2026-05-03 02:52:09,912 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-03 04:53:16] 2026-05-03 02:52:09,913 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-03 04:53:16] 2026-05-03 02:52:09,913 | INFO     | aborting loop
[2026-05-03 04:53:16] 2026-05-03 02:52:10,292 | INFO     | all data control threads have been joined
[2026-05-03 04:53:16] 2026-05-03 02:52:10,734 | INFO     | all payload control threads have been joined
[2026-05-03 04:53:16] 2026-05-03 02:52:10,917 | INFO     | [job] retrieve thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:10,918 | INFO     | [job] job monitor thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:11,209 | INFO     | all job control threads have been joined
[2026-05-03 04:53:16] 2026-05-03 02:52:11,297 | INFO     | [data] control thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:11,409 | INFO     | [payload] failed_post thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:11,483 | INFO     | [job] validate thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:11,582 | INFO     | [job] create_data_payload thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:11,706 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:11,721 | INFO     | [payload] validate_pre thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:11,740 | INFO     | [payload] control thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:11,759 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-03 04:53:16] 2026-05-03 02:52:11,818 | INFO     | [data] copytool_in thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:11,918 | INFO     | [data] copytool_out thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:11,973 | INFO     | [payload] validate_post thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:12,215 | INFO     | [job] control thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:12,384 | INFO     | [payload] execute_payloads thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:12,897 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-03 04:53:16] 2026-05-03 02:52:13,903 | INFO     | [job] queue monitor thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:15,765 | INFO     | [data] queue_monitor thread has finished
[2026-05-03 04:53:16] 2026-05-03 02:52:40,311 | INFO     | PID=1856982 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-03 04:53:16] 2026-05-03 02:52:40,311 | INFO     | .. there are 16 such processes running
[2026-05-03 04:53:16] 2026-05-03 02:52:40,311 | INFO     | found 0 job(s) in 20 queues
[2026-05-03 04:53:16] 2026-05-03 02:52:40,311 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-03 04:53:16] 2026-05-03 02:52:40,311 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-03 04:53:16] 2026-05-03 02:53:09,566 | INFO     | [monitor] cgroup control has ended
[2026-05-03 04:53:16] 2026-05-03 02:53:11,054 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23075104630592)>', '<ExcThread(monitor, started 23074864109312)>']
[2026-05-03 04:53:16] 2026-05-03 02:53:11,444 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-03 04:53:16] 2026-05-03 02:53:11,444 | INFO     | [monitor] control thread has ended
[2026-05-03 04:53:16] 2026-05-03 02:53:16,075 | INFO     | all workflow threads have been joined
[2026-05-03 04:53:16] 2026-05-03 02:53:16,075 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-03 04:53:16] 2026-05-03 02:53:16,076 | INFO     | traces error code: 0
[2026-05-03 04:53:16] 2026-05-03 02:53:16,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-03 04:53:16] 2026-05-03 02:53:16,203 [wrapper] ==== pilot stdout END ====
[2026-05-03 04:53:16] 2026-05-03 02:53:16,205 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-03 04:53:16] 2026-05-03 02:53:16,208 [wrapper] pilotpid: 1856982
[2026-05-03 04:53:16] 2026-05-03 02:53:16,210 [wrapper] Pilot exit status: 0
[2026-05-03 04:53:16] 2026-05-03 02:53:16,218 [wrapper] pandaids: 7123319315
[2026-05-03 04:53:16] 2026-05-03 02:53:16,316 [wrapper] cleanup supervisor_pilot 2124928 1856983
[2026-05-03 04:53:16] 2026-05-03 02:53:16,318 [wrapper] Test setup, not cleaning
[2026-05-03 04:53:16] 2026-05-03 02:53:16,321 [wrapper] apfmon messages muted
[2026-05-03 04:53:16] 2026-05-03 02:53:16,323 [wrapper] ==== wrapper stdout END ====
[2026-05-03 04:53:16] 2026-05-03 02:53:16,325 [wrapper] ==== wrapper stderr END ====
[2026-05-03 04:53:16]  *** Error codes and diagnostics ***
[2026-05-03 04:53:16]     "exeErrorCode": 0,
[2026-05-03 04:53:16]     "pilotErrorCode": 0,
[2026-05-03 04:53:16]  *** Listing of results directory ***
[2026-05-03 04:53:16] total 417356
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc    683926 May  2 02:25 pilot3.tar.gz
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc      5631 May  2 02:26 queuedata.json
[2026-05-03 04:53:16] -rwx------. 1 boinc boinc     36322 May  2 02:27 runpilot2-wrapper.sh
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc       100 May  3 04:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-03 04:53:16] -rwxr-xr-x. 1 boinc boinc      7986 May  3 04:15 run_atlas
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc       105 May  3 04:15 job.xml
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc      6630 May  3 04:15 init_data.xml
[2026-05-03 04:53:16] -rw-r--r--. 2 boinc boinc 223520586 May  3 04:15 EVNT.48629115._000663.pool.root.1
[2026-05-03 04:53:16] -rw-r--r--. 2 boinc boinc     15667 May  3 04:15 start_atlas.sh
[2026-05-03 04:53:16] drwxrwx--x. 2 boinc boinc      4096 May  3 04:15 shared
[2026-05-03 04:53:16] -rw-r--r--. 2 boinc boinc    697443 May  3 04:15 input.tar.gz
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc         0 May  3 04:15 boinc_lockfile
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc      2630 May  3 04:15 pandaJob.out
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc   1002964 May  3 04:16 agis_schedconf.cvmfs.json
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc   1508687 May  3 04:16 agis_ddmendpoints.agis.ALL.json
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc       443 May  3 04:16 workernode_map.json
[2026-05-03 04:53:16] drwx------. 5 boinc boinc      4096 May  3 04:16 pilot3
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc 198497383 May  3 04:51 HITS.49645815._028704.pool.root.1
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc       487 May  3 04:51 boinc_task_state.xml
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc        95 May  3 04:51 pilot_heartbeat.json
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc      1028 May  3 04:51 memory_monitor_summary.json
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc    354301 May  3 04:52 log.49645815._028704.job.log.tgz.1
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc      6376 May  3 04:52 heartbeat_new.json
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc      6267 May  3 04:52 heartbeat.json
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc        27 May  3 04:53 wrapper_checkpoint.txt
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc      8192 May  3 04:53 boinc_mmap_file
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc      4834 May  3 04:53 pilotlog.txt
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc    250775 May  3 04:53 log.49645815._028704.job.log.1
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc       357 May  3 04:53 output.list
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc       410 May  3 04:53 runtime_log
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc    624640 May  3 04:53 result.tar.gz
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc      8846 May  3 04:53 runtime_log.err
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc       659 May  3 04:53 44d9968b6bdc.diag
[2026-05-03 04:53:16] -rw-r--r--. 1 boinc boinc     21036 May  3 04:53 stderr.txt
[2026-05-03 04:53:16] HITS file was successfully produced:
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc 198497383 May  3 04:51 shared/HITS.pool.root.1
[2026-05-03 04:53:16]  *** Contents of shared directory: ***
[2026-05-03 04:53:16] total 413452
[2026-05-03 04:53:16] -rw-r--r--. 2 boinc boinc 223520586 May  3 04:15 ATLAS.root_0
[2026-05-03 04:53:16] -rw-r--r--. 2 boinc boinc     15667 May  3 04:15 start_atlas.sh
[2026-05-03 04:53:16] -rw-r--r--. 2 boinc boinc    697443 May  3 04:15 input.tar.gz
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc 198497383 May  3 04:51 HITS.pool.root.1
[2026-05-03 04:53:16] -rw-------. 1 boinc boinc    624640 May  3 04:53 result.tar.gz
04:53:18 (1852390): run_atlas exited; CPU time 22615.235871
04:53:18 (1852390): called boinc_finish(0)

</stderr_txt>
]]>

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