Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:51:08 (104636): wrapper (7.7.26015): starting
01:51:08 (104636): wrapper: running run_atlas (--nthreads 3)
[2026-05-03 01:51:08] Arguments: --nthreads 3
[2026-05-03 01:51:08] Threads: 3
[2026-05-03 01:51:08] Checking for CVMFS
[2026-05-03 01:51:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-03 01:51:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-03 01:51:09] Running cvmfs_config stat atlas.cern.ch
[2026-05-03 01:51:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-03 01:51:09] 2.9.2.0 90314 101 49392 159148 3 50 27547343 36864001 0 130560 0 55229 99.968 5441 3796 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-05-03 01:51:09] CVMFS is ok
[2026-05-03 01:51:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 01:51:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 01:51:09] Further information can be found at the LHC@home message board.
[2026-05-03 01:51:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 01:51:09] Checking for apptainer binary...
[2026-05-03 01:51:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-03 01:51:09] Running /usr/bin/apptainer --version
[2026-05-03 01:51:09] apptainer version 1.4.1-1.1
[2026-05-03 01:51:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 01:51:09] atlasA215
[2026-05-03 01:51:09] apptainer works
[2026-05-03 01:51:09] Set ATHENA_PROC_NUMBER=3
[2026-05-03 01:51:09] Set ATHENA_CORE_NUMBER=3
[2026-05-03 01:51:09] Starting ATLAS job with PandaID=7123317003
[2026-05-03 01:51:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-03 03:12:33]  *** The last 200 lines of the pilot log: ***
[2026-05-03 03:12:33]  direct_access_wan=False
[2026-05-03 03:12:33]  domain=
[2026-05-03 03:12:33]  filesize=215975
[2026-05-03 03:12:33]  filetype=log
[2026-05-03 03:12:33]  guid=f5d8ff60-6b95-45b3-80bf-8218c0c6b80c
[2026-05-03 03:12:33]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-03 03:12:33]  is_altstaged=None
[2026-05-03 03:12:33]  is_tar=False
[2026-05-03 03:12:33]  lfn=log.49263200._086756.job.log.tgz.1
[2026-05-03 03:12:33]  mtime=0
[2026-05-03 03:12:33]  protocol_id=None
[2026-05-03 03:12:33]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-03 03:12:33]  replicas=None
[2026-05-03 03:12:33]  scope=mc23_13p6TeV
[2026-05-03 03:12:33]  status=None
[2026-05-03 03:12:33]  status_code=0
[2026-05-03 03:12:33]  storage_token=
[2026-05-03 03:12:33]  surl=/local/data/boinc/slots/0/PanDA_Pilot-7123317003/log.49263200._086756.job.log.tgz.1
[2026-05-03 03:12:33]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/0d/log.49263200._086756.job.log.tgz.1
[2026-05-03 03:12:33]  workdir=None
[2026-05-03 03:12:33] ]
[2026-05-03 03:12:33] 2026-05-03 01:11:46,608 | INFO     | transferring file log.49263200._086756.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-7123317003/log.49263200._086756.job.log.tgz.1 to /local/data/boinc/
[2026-05-03 03:12:33] 2026-05-03 01:11:46,608 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-7123317003/log.49263200._086756.job.log.tgz.1 /local/data/boinc/slots/0/log.49263200._0867
[2026-05-03 03:12:33] 2026-05-03 01:11:46,621 | INFO     | adding to output.list: log.49263200._086756.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/59/0d/log.49263200._086756.job.log.tg
[2026-05-03 03:12:33] 2026-05-03 01:11:46,621 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-03 03:12:33] 2026-05-03 01:11:46,621 | INFO     | summary of transferred files:
[2026-05-03 03:12:33] 2026-05-03 01:11:46,621 | INFO     |  -- lfn=log.49263200._086756.job.log.tgz.1, status_code=0, status=transferred
[2026-05-03 03:12:33] 2026-05-03 01:11:46,621 | INFO     | stage-out finished correctly
[2026-05-03 03:12:33] 2026-05-03 01:11:46,772 | INFO     | monitor loop #374: job 0:7123317003 is in state 'finished'
[2026-05-03 03:12:33] 2026-05-03 01:11:46,772 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-03 03:12:33] 2026-05-03 01:11:46,875 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-03 03:12:33] 2026-05-03 01:11:46,905 | INFO     | job 7123317003 has state=finished
[2026-05-03 03:12:33] 2026-05-03 01:11:46,906 | INFO     | preparing for final server update for job 7123317003 in state='finished'
[2026-05-03 03:12:33] 2026-05-03 01:11:46,906 | INFO     | reading metadata from: /local/data/boinc/slots/0/PanDA_Pilot-7123317003/jobReport.json
[2026-05-03 03:12:33] 2026-05-03 01:11:46,907 | INFO     | added worker_node to metadata from /local/data/boinc/slots/0/workernode_map.json
[2026-05-03 03:12:33] 2026-05-03 01:11:46,907 | INFO     | this job has now completed (state=finished)
[2026-05-03 03:12:33] 2026-05-03 01:11:46,907 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-03 03:12:33] 2026-05-03 01:11:46,907 | INFO     | log transfer has been attempted: DONE
[2026-05-03 03:12:33] 2026-05-03 01:11:46,907 | INFO     | job 7123317003 has finished - writing final server update
[2026-05-03 03:12:33] 2026-05-03 01:11:46,907 | INFO     | total number of processed events: 400 (read)
[2026-05-03 03:12:33] 2026-05-03 01:11:46,908 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7123317003/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 03:12:33] 2026-05-03 01:11:46,908 | INFO     | extracted standard info from prmon json
[2026-05-03 03:12:33] 2026-05-03 01:11:46,908 | INFO     | extracted standard memory fields from prmon json
[2026-05-03 03:12:33] 2026-05-03 01:11:46,908 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-03 03:12:33] 2026-05-03 01:11:46,908 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-03 03:12:33] 2026-05-03 01:11:46,909 | INFO     | fitting pss+swap vs Time
[2026-05-03 03:12:33] 2026-05-03 01:11:46,909 | INFO     | sum of square deviations: 115715658.0
[2026-05-03 03:12:33] 2026-05-03 01:11:46,909 | INFO     | sum of deviations: -3225650415.0000005
[2026-05-03 03:12:33] 2026-05-03 01:11:46,909 | INFO     | mean x (centered): 0.0
[2026-05-03 03:12:33] 2026-05-03 01:11:46,909 | INFO     | mean y: 2402077.5833333335
[2026-05-03 03:12:33] 2026-05-03 01:11:46,909 | INFO     | intersect: 2402077.5833333335
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | chi2: 0.3692439619647612
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | current memory leak: -27.88 B/s (using 72 data points, chi2=0.37)
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | could have reported an average CPU frequency of 4004 MHz (6 samples)
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | ..............................
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | . Timing measurements:
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | . get job = 0 s
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | . initial setup = 3 s
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | . payload setup = 4 s
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | . stage-in = 0 s
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | . payload execution = 4805 s
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | . stage-out = 0 s
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | . log creation = 0 s
[2026-05-03 03:12:33] 2026-05-03 01:11:46,910 | INFO     | ..............................
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | 
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | job summary report
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | --------------------------------------------------
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | PanDA job id: 7123317003
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | task id: 49263200
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | errors: (none)
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | pilot state: finished 
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | transexitcode: 0
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | exeerrorcode: 0
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | exeerrordiag: 
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | exitcode: 0
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | exitmsg: OK
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | cpuconsumptiontime: 13119 s
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | nevents: 400
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | neventsw: 0
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | pid: 113109
[2026-05-03 03:12:33] 2026-05-03 01:11:47,186 | INFO     | pgrp: 113109
[2026-05-03 03:12:33] 2026-05-03 01:11:47,187 | INFO     | corecount: 3
[2026-05-03 03:12:33] 2026-05-03 01:11:47,187 | INFO     | event service: False
[2026-05-03 03:12:33] 2026-05-03 01:11:47,187 | INFO     | sizes: {0: 2277162, 10: 2277162, 4814: 2312686}
[2026-05-03 03:12:33] 2026-05-03 01:11:47,187 | INFO     | --------------------------------------------------
[2026-05-03 03:12:33] 2026-05-03 01:11:47,187 | INFO     | 
[2026-05-03 03:12:33] 2026-05-03 01:11:47,187 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-05-03 03:12:33] 2026-05-03 01:11:47,202 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | job 7123317003 has completed (purged errors)
[2026-05-03 03:12:33] 2026-05-03 01:11:47,203 | INFO     | overall cleanup function is called
[2026-05-03 03:12:33] 2026-05-03 01:11:48,210 | INFO     | --- collectZombieJob: --- 10, [113109]
[2026-05-03 03:12:33] 2026-05-03 01:11:48,210 | INFO     | zombie collector waiting for pid 113109
[2026-05-03 03:12:33] 2026-05-03 01:11:48,210 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-03 03:12:33] 2026-05-03 01:11:48,210 | INFO     | collected zombie processes
[2026-05-03 03:12:33] 2026-05-03 01:11:48,210 | INFO     | will attempt to kill all subprocesses of pid=113109
[2026-05-03 03:12:33] 2026-05-03 01:11:48,240 | INFO     | process IDs to be killed: [113109] (in reverse order)
[2026-05-03 03:12:33] 2026-05-03 01:11:48,265 | WARNING  | found no corresponding commands to process id(s)
[2026-05-03 03:12:33] 2026-05-03 01:11:48,265 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-03 03:12:33] 2026-05-03 01:11:48,267 | INFO     | did not find any defunct processes belonging to 113109
[2026-05-03 03:12:33] 2026-05-03 01:11:48,267 | INFO     | did not find any defunct processes belonging to 113109
[2026-05-03 03:12:33] 2026-05-03 01:11:48,268 | INFO     | Ready for new job
[2026-05-03 03:12:33] 2026-05-03 01:11:48,268 | INFO     | ***************************************
[2026-05-03 03:12:33] 2026-05-03 01:11:48,268 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-03 03:12:33] 2026-05-03 01:11:48,268 | INFO     | ***************************************
[2026-05-03 03:12:33] 2026-05-03 01:11:48,268 | INFO     | 
[2026-05-03 03:12:33] 2026-05-03 01:11:48,269 | INFO     | architecture information:
[2026-05-03 03:12:33] 2026-05-03 01:11:48,269 | INFO     | executing command: cat /etc/os-release
[2026-05-03 03:12:33] 2026-05-03 01:11:48,278 | INFO     | cat /etc/os-release:
[2026-05-03 03:12:33] NAME="CentOS Linux"
[2026-05-03 03:12:33] VERSION="7 (Core)"
[2026-05-03 03:12:33] ID="centos"
[2026-05-03 03:12:33] ID_LIKE="rhel fedora"
[2026-05-03 03:12:33] VERSION_ID="7"
[2026-05-03 03:12:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-03 03:12:33] ANSI_COLOR="0;31"
[2026-05-03 03:12:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-03 03:12:33] HOME_URL="https://www.centos.org/"
[2026-05-03 03:12:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-03 03:12:33] 
[2026-05-03 03:12:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-03 03:12:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-03 03:12:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-03 03:12:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-03 03:12:33] 
[2026-05-03 03:12:33] 2026-05-03 01:11:48,278 | INFO     | ***************************************
[2026-05-03 03:12:33] 2026-05-03 01:11:48,782 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-05-03 03:12:33] 2026-05-03 01:11:48,795 | INFO     | sufficient remaining disk space (378481410048 B)
[2026-05-03 03:12:33] 2026-05-03 01:11:48,796 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-03 03:12:33] 2026-05-03 01:11:48,796 | INFO     | current server update state: UPDATING_FINAL
[2026-05-03 03:12:33] 2026-05-03 01:11:48,796 | INFO     | update_server=False
[2026-05-03 03:12:33] 2026-05-03 01:11:48,796 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-03 03:12:33] 2026-05-03 01:11:48,796 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-03 03:12:33] 2026-05-03 01:11:48,796 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-03 03:12:33] 2026-05-03 01:11:49,276 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-03 03:12:33] 2026-05-03 01:11:49,277 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-03 03:12:33] 2026-05-03 01:11:49,277 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-03 03:12:33] 2026-05-03 01:11:49,277 | INFO     | will abort loop
[2026-05-03 03:12:33] 2026-05-03 01:11:49,569 | INFO     | all job control threads have been joined
[2026-05-03 03:12:33] 2026-05-03 01:11:49,655 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-03 03:12:33] 2026-05-03 01:11:49,802 | INFO     | [job] queue monitor thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:49,802 | INFO     | [job] retrieve thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:49,818 | INFO     | [payload] failed_post thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:49,836 | INFO     | all data control threads have been joined
[2026-05-03 03:12:33] 2026-05-03 01:11:49,870 | INFO     | [payload] validate_pre thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:49,907 | INFO     | all payload control threads have been joined
[2026-05-03 03:12:33] 2026-05-03 01:11:50,009 | INFO     | [data] copytool_in thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:50,278 | INFO     | [job] job monitor thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:50,348 | INFO     | [payload] execute_payloads thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:50,575 | INFO     | [job] control thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:50,575 | INFO     | [payload] validate_post thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:50,841 | INFO     | [data] control thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:50,909 | INFO     | [payload] control thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:51,217 | INFO     | [job] validate thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:51,257 | INFO     | [job] create_data_payload thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:51,662 | INFO     | [data] copytool_out thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:52,803 | INFO     | [data] queue_monitor thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:11:58,865 | INFO     | job.realtimelogging is not enabled
[2026-05-03 03:12:33] 2026-05-03 01:11:59,871 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-03 03:12:33] 2026-05-03 01:12:19,025 | INFO     | PID=108683 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-03 03:12:33] 2026-05-03 01:12:19,025 | INFO     | found 0 job(s) in 20 queues
[2026-05-03 03:12:33] 2026-05-03 01:12:19,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-03 03:12:33] 2026-05-03 01:12:19,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-03 03:12:33] 2026-05-03 01:12:27,613 | INFO     | [monitor] cgroup control has ended
[2026-05-03 03:12:33] 2026-05-03 01:12:28,546 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139728572917568)>', '<ExcThread(monitor, started 139727466379008)>']
[2026-05-03 03:12:33] 2026-05-03 01:12:29,075 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-03 03:12:33] 2026-05-03 01:12:29,075 | INFO     | [monitor] control thread has ended
[2026-05-03 03:12:33] 2026-05-03 01:12:33,572 | INFO     | all workflow threads have been joined
[2026-05-03 03:12:33] 2026-05-03 01:12:33,572 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-03 03:12:33] 2026-05-03 01:12:33,572 | INFO     | traces error code: 0
[2026-05-03 03:12:33] 2026-05-03 01:12:33,572 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-03 03:12:33] 2026-05-03 01:12:33,623 [wrapper] ==== pilot stdout END ====
[2026-05-03 03:12:33] 2026-05-03 01:12:33,626 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-03 03:12:33] 2026-05-03 01:12:33,628 [wrapper] pilotpid: 108683
[2026-05-03 03:12:33] 2026-05-03 01:12:33,631 [wrapper] Pilot exit status: 0
[2026-05-03 03:12:33] 2026-05-03 01:12:33,639 [wrapper] pandaids: 7123317003
[2026-05-03 03:12:33] 2026-05-03 01:12:33,655 [wrapper] cleanup supervisor_pilot  118313 108684
[2026-05-03 03:12:33] 2026-05-03 01:12:33,658 [wrapper] Test setup, not cleaning
[2026-05-03 03:12:33] 2026-05-03 01:12:33,660 [wrapper] apfmon messages muted
[2026-05-03 03:12:33] 2026-05-03 01:12:33,662 [wrapper] ==== wrapper stdout END ====
[2026-05-03 03:12:33] 2026-05-03 01:12:33,665 [wrapper] ==== wrapper stderr END ====
[2026-05-03 03:12:33]  *** Error codes and diagnostics ***
[2026-05-03 03:12:33]     "exeErrorCode": 0,
[2026-05-03 03:12:33]     "pilotErrorCode": 0,
[2026-05-03 03:12:33]  *** Listing of results directory ***
[2026-05-03 03:12:33] total 402252
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc    683926 May  2 02:25 pilot3.tar.gz
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc      5631 May  2 02:26 queuedata.json
[2026-05-03 03:12:33] -rwx------ 1 boinc boinc     36322 May  2 02:26 runpilot2-wrapper.sh
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc       100 May  3 01:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-03 03:12:33] -rwxr-xr-x 1 boinc boinc      7986 May  3 01:51 run_atlas
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc       105 May  3 01:51 job.xml
[2026-05-03 03:12:33] -rw-r--r-- 2 boinc boinc 221478949 May  3 01:51 EVNT.49263198._001842.pool.root.1
[2026-05-03 03:12:33] drwxrwx--x 2 boinc boinc      4096 May  3 01:51 shared
[2026-05-03 03:12:33] -rw-r--r-- 2 boinc boinc    697429 May  3 01:51 input.tar.gz
[2026-05-03 03:12:33] -rw-r--r-- 2 boinc boinc     15667 May  3 01:51 start_atlas.sh
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc         0 May  3 01:51 boinc_setup_complete
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc      6363 May  3 01:51 init_data.xml
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc         0 May  3 01:51 boinc_lockfile
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc      2577 May  3 01:51 pandaJob.out
[2026-05-03 03:12:33] -rw------- 1 boinc boinc   1002972 May  3 01:51 agis_schedconf.cvmfs.json
[2026-05-03 03:12:33] -rw------- 1 boinc boinc   1508687 May  3 01:51 agis_ddmendpoints.agis.ALL.json
[2026-05-03 03:12:33] -rw------- 1 boinc boinc       426 May  3 01:51 workernode_map.json
[2026-05-03 03:12:33] drwx------ 5 boinc boinc      4096 May  3 01:51 pilot3
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc       487 May  3 03:11 boinc_task_state.xml
[2026-05-03 03:12:33] -rw------- 1 boinc boinc 184908055 May  3 03:11 HITS.49263200._086756.pool.root.1
[2026-05-03 03:12:33] -rw------- 1 boinc boinc        95 May  3 03:11 pilot_heartbeat.json
[2026-05-03 03:12:33] -rw------- 1 boinc boinc      1010 May  3 03:11 memory_monitor_summary.json
[2026-05-03 03:12:33] -rw------- 1 boinc boinc    215975 May  3 03:11 log.49263200._086756.job.log.tgz.1
[2026-05-03 03:12:33] -rw------- 1 boinc boinc      6319 May  3 03:11 heartbeat_new.json
[2026-05-03 03:12:33] -rw------- 1 boinc boinc      6210 May  3 03:11 heartbeat.json
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc        27 May  3 03:12 wrapper_checkpoint.txt
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc      8192 May  3 03:12 boinc_mmap_file
[2026-05-03 03:12:33] -rw------- 1 boinc boinc      5008 May  3 03:12 pilotlog.txt
[2026-05-03 03:12:33] -rw------- 1 boinc boinc    474714 May  3 03:12 log.49263200._086756.job.log.1
[2026-05-03 03:12:33] -rw------- 1 boinc boinc       357 May  3 03:12 output.list
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc       410 May  3 03:12 runtime_log
[2026-05-03 03:12:33] -rw------- 1 boinc boinc    706560 May  3 03:12 result.tar.gz
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc      8534 May  3 03:12 runtime_log.err
[2026-05-03 03:12:33] -rw------- 1 boinc boinc       660 May  3 03:12 44b4a898b078.diag
[2026-05-03 03:12:33] -rw-r--r-- 1 boinc boinc     20900 May  3 03:12 stderr.txt
[2026-05-03 03:12:33] HITS file was successfully produced:
[2026-05-03 03:12:33] -rw------- 1 boinc boinc 184908055 May  3 03:11 shared/HITS.pool.root.1
[2026-05-03 03:12:33]  *** Contents of shared directory: ***
[2026-05-03 03:12:33] total 398268
[2026-05-03 03:12:33] -rw-r--r-- 2 boinc boinc 221478949 May  3 01:51 ATLAS.root_0
[2026-05-03 03:12:33] -rw-r--r-- 2 boinc boinc    697429 May  3 01:51 input.tar.gz
[2026-05-03 03:12:33] -rw-r--r-- 2 boinc boinc     15667 May  3 01:51 start_atlas.sh
[2026-05-03 03:12:33] -rw------- 1 boinc boinc 184908055 May  3 03:11 HITS.pool.root.1
[2026-05-03 03:12:33] -rw------- 1 boinc boinc    706560 May  3 03:12 result.tar.gz
03:12:35 (104636): run_atlas exited; CPU time 13137.040594
03:12:35 (104636): called boinc_finish(0)

</stderr_txt>
]]>

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