Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:31:34 (2440538): wrapper (7.7.26015): starting
20:31:34 (2440538): wrapper: running run_atlas (--nthreads 8)
[2026-05-01 20:31:34] Arguments: --nthreads 8
[2026-05-01 20:31:34] Threads: 8
[2026-05-01 20:31:34] Checking for CVMFS
[2026-05-01 20:31:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-01 20:31:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-01 20:31:35] Running cvmfs_config stat atlas.cern.ch
[2026-05-01 20:31:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-01 20:31:37] 2.13.3.0 8250 1592 145916 159113 3 547 34953594 40960000 56818 16776704 0 36073228 99.793 18532887 28952 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-05-01 20:31:37] CVMFS is ok
[2026-05-01 20:31:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-01 20:31:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-01 20:31:37] Further information can be found at the LHC@home message board.
[2026-05-01 20:31:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 20:31:37] Checking for apptainer binary...
[2026-05-01 20:31:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-01 20:31:37] Running /usr/bin/apptainer --version
[2026-05-01 20:31:37] apptainer version 1.4.5-3.el9
[2026-05-01 20:31:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 20:31:37] c8-7-5.aglt2.org
[2026-05-01 20:31:37] apptainer works
[2026-05-01 20:31:37] Set ATHENA_PROC_NUMBER=8
[2026-05-01 20:31:37] Set ATHENA_CORE_NUMBER=8
[2026-05-01 20:31:37] Starting ATLAS job with PandaID=7119461884
[2026-05-01 20:31:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 22:11:59]  *** The last 200 lines of the pilot log: ***
[2026-05-01 22:11:59]  mtime=0
[2026-05-01 22:11:59]  protocol_id=None
[2026-05-01 22:11:59]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-01 22:11:59]  replicas=None
[2026-05-01 22:11:59]  scope=mc23_13p6TeV
[2026-05-01 22:11:59]  status=None
[2026-05-01 22:11:59]  status_code=0
[2026-05-01 22:11:59]  storage_token=
[2026-05-01 22:11:59]  surl=/tmp/boinchome/slots/2/PanDA_Pilot-7119461884/log.49963738._000006.job.log.tgz.1
[2026-05-01 22:11:59]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/e4/log.49963738._000006.job.log.tgz.1
[2026-05-01 22:11:59]  workdir=None
[2026-05-01 22:11:59] ]
[2026-05-01 22:11:59] 2026-05-02 02:11:19,876 | INFO     | transferring file log.49963738._000006.job.log.tgz.1 from /tmp/boinchome/slots/2/PanDA_Pilot-7119461884/log.49963738._000006.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-05-01 22:11:59] 2026-05-02 02:11:19,877 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/2/PanDA_Pilot-7119461884/log.49963738._000006.job.log.tgz.1 /tmp/boinchome/slots/2/log.49963738._000006.job
[2026-05-01 22:11:59] 2026-05-02 02:11:20,007 | INFO     | adding to output.list: log.49963738._000006.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4d/e4/log.49963738._000006.job.log.tg
[2026-05-01 22:11:59] 2026-05-02 02:11:20,008 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-01 22:11:59] 2026-05-02 02:11:20,008 | INFO     | summary of transferred files:
[2026-05-01 22:11:59] 2026-05-02 02:11:20,008 | INFO     |  -- lfn=log.49963738._000006.job.log.tgz.1, status_code=0, status=transferred
[2026-05-01 22:11:59] 2026-05-02 02:11:20,008 | INFO     | stage-out finished correctly
[2026-05-01 22:11:59] 2026-05-02 02:11:21,162 | WARNING  | process 2494540 can no longer be monitored (due to stat problems) - aborting
[2026-05-01 22:11:59] 2026-05-02 02:11:21,166 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7119461884/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 22:11:59] 2026-05-02 02:11:21,167 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3016120 B
[2026-05-01 22:11:59] 2026-05-02 02:11:21,167 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16301 B
[2026-05-01 22:11:59] 2026-05-02 02:11:21,167 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-05-01 22:11:59] 2026-05-02 02:11:21,222 | INFO     | sufficient remaining disk space (170223730688 B)
[2026-05-01 22:11:59] 2026-05-02 02:11:21,222 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-05-01 22:11:59] 2026-05-02 02:11:21,234 | INFO     | size of work directory /tmp/boinchome/slots/2/PanDA_Pilot-7119461884: 3326169 B (within 5033164800 B limit)
[2026-05-01 22:11:59] 2026-05-02 02:11:21,234 | INFO     | pfn file=/tmp/boinchome/slots/2/PanDA_Pilot-7119461884/HITS.49963738._000006.pool.root.1 does not exist (skip from workdir size calculation)
[2026-05-01 22:11:59] 2026-05-02 02:11:21,234 | INFO     | total size of present files: 0 B (workdir size: 3326169 B)
[2026-05-01 22:11:59] 2026-05-02 02:11:21,234 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/2/PanDA_Pilot-7119461884/HITS.49963738._000006.pool.root.1 since it does not exist
[2026-05-01 22:11:59] 2026-05-02 02:11:22,122 | INFO     | number of running child processes to parent process 2494540: 1
[2026-05-01 22:11:59] 2026-05-02 02:11:22,122 | INFO     | maximum number of monitored processes: 6
[2026-05-01 22:11:59] 2026-05-02 02:11:23,006 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-01 22:11:59] 2026-05-02 02:11:23,461 | INFO     | job 7119461884 has state=finished
[2026-05-01 22:11:59] 2026-05-02 02:11:23,461 | INFO     | preparing for final server update for job 7119461884 in state='finished'
[2026-05-01 22:11:59] 2026-05-02 02:11:23,462 | INFO     | reading metadata from: /tmp/boinchome/slots/2/PanDA_Pilot-7119461884/jobReport.json
[2026-05-01 22:11:59] 2026-05-02 02:11:23,463 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/2/workernode_map.json
[2026-05-01 22:11:59] 2026-05-02 02:11:23,467 | INFO     | this job has now completed (state=finished)
[2026-05-01 22:11:59] 2026-05-02 02:11:23,467 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-01 22:11:59] 2026-05-02 02:11:23,467 | INFO     | log transfer has been attempted: DONE
[2026-05-01 22:11:59] 2026-05-02 02:11:23,467 | INFO     | job 7119461884 has finished - writing final server update
[2026-05-01 22:11:59] 2026-05-02 02:11:23,467 | INFO     | total number of processed events: 400 (read)
[2026-05-01 22:11:59] 2026-05-02 02:11:23,491 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7119461884/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 22:11:59] 2026-05-02 02:11:23,491 | INFO     | extracted standard info from prmon json
[2026-05-01 22:11:59] 2026-05-02 02:11:23,491 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 22:11:59] 2026-05-02 02:11:23,491 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 22:11:59] 2026-05-02 02:11:23,491 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 22:11:59] 2026-05-02 02:11:23,492 | INFO     | fitting pss+swap vs Time
[2026-05-01 22:11:59] 2026-05-02 02:11:23,493 | INFO     | sum of square deviations: 211274487.27272764
[2026-05-01 22:11:59] 2026-05-02 02:11:23,493 | INFO     | sum of deviations: 1442053106.1363626
[2026-05-01 22:11:59] 2026-05-02 02:11:23,493 | INFO     | mean x (centered): 0.0
[2026-05-01 22:11:59] 2026-05-02 02:11:23,493 | INFO     | mean y: 2505351.6704545454
[2026-05-01 22:11:59] 2026-05-02 02:11:23,493 | INFO     | intersect: 2505351.6704545454
[2026-05-01 22:11:59] 2026-05-02 02:11:23,493 | INFO     | chi2: 0.0813080691029923
[2026-05-01 22:11:59] 2026-05-02 02:11:23,514 | INFO     | current memory leak: 6.83 B/s (using 88 data points, chi2=0.08)
[2026-05-01 22:11:59] 2026-05-02 02:11:23,515 | INFO     | could have reported an average CPU frequency of 3799 MHz (7 samples)
[2026-05-01 22:11:59] 2026-05-02 02:11:23,515 | INFO     | ..............................
[2026-05-01 22:11:59] 2026-05-02 02:11:23,515 | INFO     | . Timing measurements:
[2026-05-01 22:11:59] 2026-05-02 02:11:23,515 | INFO     | . get job = 0 s
[2026-05-01 22:11:59] 2026-05-02 02:11:23,515 | INFO     | . initial setup = 38 s
[2026-05-01 22:11:59] 2026-05-02 02:11:23,515 | INFO     | . payload setup = 77 s
[2026-05-01 22:11:59] 2026-05-02 02:11:23,515 | INFO     | . stage-in = 0 s
[2026-05-01 22:11:59] 2026-05-02 02:11:23,515 | INFO     | . payload execution = 5783 s
[2026-05-01 22:11:59] 2026-05-02 02:11:23,515 | INFO     | . stage-out = 2 s
[2026-05-01 22:11:59] 2026-05-02 02:11:23,515 | INFO     | . log creation = 0 s
[2026-05-01 22:11:59] 2026-05-02 02:11:23,515 | INFO     | ..............................
[2026-05-01 22:11:59] 2026-05-02 02:11:23,779 | INFO     | 
[2026-05-01 22:11:59] 2026-05-02 02:11:23,779 | INFO     | job summary report
[2026-05-01 22:11:59] 2026-05-02 02:11:23,779 | INFO     | --------------------------------------------------
[2026-05-01 22:11:59] 2026-05-02 02:11:23,779 | INFO     | PanDA job id: 7119461884
[2026-05-01 22:11:59] 2026-05-02 02:11:23,779 | INFO     | task id: 49963738
[2026-05-01 22:11:59] 2026-05-02 02:11:23,779 | INFO     | errors: (none)
[2026-05-01 22:11:59] 2026-05-02 02:11:23,779 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 22:11:59] 2026-05-02 02:11:23,779 | INFO     | pilot state: finished 
[2026-05-01 22:11:59] 2026-05-02 02:11:23,779 | INFO     | transexitcode: 0
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | exeerrorcode: 0
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | exeerrordiag: 
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | exitcode: 0
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | exitmsg: OK
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | cpuconsumptiontime: 24123 s
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | nevents: 400
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | neventsw: 0
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | pid: 2494540
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | pgrp: 2494540
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | corecount: 8
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | event service: False
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | sizes: {0: 2275205, 1: 2277034, 5866: 2303810, 5869: 2312808, 5873: 2313086}
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | --------------------------------------------------
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | 
[2026-05-01 22:11:59] 2026-05-02 02:11:23,780 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-05-01 22:11:59] 2026-05-02 02:11:23,954 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,954 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | job 7119461884 has completed (purged errors)
[2026-05-01 22:11:59] 2026-05-02 02:11:23,955 | INFO     | overall cleanup function is called
[2026-05-01 22:11:59] 2026-05-02 02:11:24,971 | INFO     | --- collectZombieJob: --- 10, [2494540]
[2026-05-01 22:11:59] 2026-05-02 02:11:24,971 | INFO     | zombie collector waiting for pid 2494540
[2026-05-01 22:11:59] 2026-05-02 02:11:24,971 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 22:11:59] 2026-05-02 02:11:24,971 | INFO     | collected zombie processes
[2026-05-01 22:11:59] 2026-05-02 02:11:24,971 | INFO     | will attempt to kill all subprocesses of pid=2494540
[2026-05-01 22:11:59] 2026-05-02 02:11:26,485 | INFO     | process IDs to be killed: [2494540] (in reverse order)
[2026-05-01 22:11:59] 2026-05-02 02:11:26,808 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 22:11:59] 2026-05-02 02:11:26,808 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 22:11:59] 2026-05-02 02:11:26,886 | INFO     | did not find any defunct processes belonging to 2494540
[2026-05-01 22:11:59] 2026-05-02 02:11:26,944 | INFO     | did not find any defunct processes belonging to 2494540
[2026-05-01 22:11:59] 2026-05-02 02:11:26,945 | INFO     | Ready for new job
[2026-05-01 22:11:59] 2026-05-02 02:11:26,946 | INFO     | ***************************************
[2026-05-01 22:11:59] 2026-05-02 02:11:26,946 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 22:11:59] 2026-05-02 02:11:26,946 | INFO     | ***************************************
[2026-05-01 22:11:59] 2026-05-02 02:11:26,946 | INFO     | 
[2026-05-01 22:11:59] 2026-05-02 02:11:26,952 | INFO     | architecture information:
[2026-05-01 22:11:59] 2026-05-02 02:11:26,952 | INFO     | executing command: cat /etc/os-release
[2026-05-01 22:11:59] 2026-05-02 02:11:27,069 | INFO     | cat /etc/os-release:
[2026-05-01 22:11:59] NAME="CentOS Linux"
[2026-05-01 22:11:59] VERSION="7 (Core)"
[2026-05-01 22:11:59] ID="centos"
[2026-05-01 22:11:59] ID_LIKE="rhel fedora"
[2026-05-01 22:11:59] VERSION_ID="7"
[2026-05-01 22:11:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 22:11:59] ANSI_COLOR="0;31"
[2026-05-01 22:11:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 22:11:59] HOME_URL="https://www.centos.org/"
[2026-05-01 22:11:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 22:11:59] 
[2026-05-01 22:11:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 22:11:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 22:11:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 22:11:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 22:11:59] 
[2026-05-01 22:11:59] 2026-05-02 02:11:27,069 | INFO     | ***************************************
[2026-05-01 22:11:59] 2026-05-02 02:11:27,572 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-05-01 22:11:59] 2026-05-02 02:11:27,587 | INFO     | sufficient remaining disk space (170225827840 B)
[2026-05-01 22:11:59] 2026-05-02 02:11:27,588 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 22:11:59] 2026-05-02 02:11:27,588 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 22:11:59] 2026-05-02 02:11:27,588 | INFO     | update_server=False
[2026-05-01 22:11:59] 2026-05-02 02:11:27,588 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 22:11:59] 2026-05-02 02:11:27,973 | INFO     | all data control threads have been joined
[2026-05-01 22:11:59] 2026-05-02 02:11:28,137 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 22:11:59] 2026-05-02 02:11:28,177 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 22:11:59] 2026-05-02 02:11:28,177 | INFO     | aborting loop
[2026-05-01 22:11:59] 2026-05-02 02:11:28,274 | INFO     | all payload control threads have been joined
[2026-05-01 22:11:59] 2026-05-02 02:11:28,594 | INFO     | [job] retrieve thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:28,615 | INFO     | all job control threads have been joined
[2026-05-01 22:11:59] 2026-05-02 02:11:28,784 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:28,784 | INFO     | [job] validate thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:28,785 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:28,798 | INFO     | [payload] failed_post thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:28,802 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 22:11:59] 2026-05-02 02:11:28,888 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:28,979 | INFO     | [data] control thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:29,183 | INFO     | [job] job monitor thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:29,186 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 22:11:59] 2026-05-02 02:11:29,280 | INFO     | [payload] control thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:29,475 | INFO     | [payload] validate_post thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:29,484 | INFO     | [data] copytool_in thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:29,621 | INFO     | [job] control thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:29,808 | INFO     | [job] queue monitor thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:29,933 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:30,144 | INFO     | [data] copytool_out thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:33,210 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 22:11:59] 2026-05-02 02:11:38,451 | INFO     | [monitor] cgroup control has ended
[2026-05-01 22:11:59] 2026-05-02 02:11:39,558 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140666031966016)>', '<ExcThread(monitor, started 140665606366976)>']
[2026-05-01 22:11:59] 2026-05-02 02:11:44,584 | INFO     | all workflow threads have been joined
[2026-05-01 22:11:59] 2026-05-02 02:11:44,584 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 22:11:59] 2026-05-02 02:11:44,584 | INFO     | traces error code: 0
[2026-05-01 22:11:59] 2026-05-02 02:11:44,585 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 22:11:59] 2026-05-02 02:11:57,662 | INFO     | PID=2462979 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-01 22:11:59] 2026-05-02 02:11:57,667 | INFO     | .. there are 61 such processes running
[2026-05-01 22:11:59] 2026-05-02 02:11:57,668 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 22:11:59] 2026-05-02 02:11:57,668 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 22:11:59] 2026-05-02 02:11:57,668 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 22:11:59] 2026-05-02 02:11:57,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 22:11:59] 2026-05-02 02:11:57,668 | INFO     | [monitor] control thread has ended
[2026-05-01 22:11:59] 2026-05-02 02:11:57,887 [wrapper] ==== pilot stdout END ====
[2026-05-01 22:11:59] 2026-05-02 02:11:57,908 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 22:11:59] 2026-05-02 02:11:57,940 [wrapper] pilotpid: 2462979
[2026-05-01 22:11:59] 2026-05-02 02:11:57,964 [wrapper] Pilot exit status: 0
[2026-05-01 22:11:59] 2026-05-02 02:11:58,103 [wrapper] pandaids: 7119461884
[2026-05-01 22:11:59] 2026-05-02 02:11:58,346 [wrapper] cleanup supervisor_pilot 3994163 2462980
[2026-05-01 22:11:59] 2026-05-02 02:11:58,411 [wrapper] Test setup, not cleaning
[2026-05-01 22:11:59] 2026-05-02 02:11:58,453 [wrapper] apfmon messages muted
[2026-05-01 22:11:59] 2026-05-02 02:11:58,471 [wrapper] ==== wrapper stdout END ====
[2026-05-01 22:11:59] 2026-05-02 02:11:58,555 [wrapper] ==== wrapper stderr END ====
[2026-05-01 22:11:59]  *** Error codes and diagnostics ***
[2026-05-01 22:11:59]     "exeErrorCode": 0,
[2026-05-01 22:11:59]     "pilotErrorCode": 0,
[2026-05-01 22:11:59]  *** Listing of results directory ***
[2026-05-01 22:11:59] total 368516
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas    683926 Apr 29 15:17 pilot3.tar.gz
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas      5631 Apr 29 15:41 queuedata.json
[2026-05-01 22:11:59] -rwx------. 1 boincer umatlas     36322 Apr 29 15:41 runpilot2-wrapper.sh
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas       100 May  1 20:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 22:11:59] -rwxr-xr-x. 1 boincer umatlas      7986 May  1 20:31 run_atlas
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas       105 May  1 20:31 job.xml
[2026-05-01 22:11:59] -rw-r--r--. 2 boincer umatlas 197994739 May  1 20:31 EVNT.49963736._000001.pool.root.1
[2026-05-01 22:11:59] -rw-r--r--. 2 boincer umatlas     15667 May  1 20:31 start_atlas.sh
[2026-05-01 22:11:59] drwxrwx--x. 2 boincer umatlas      4096 May  1 20:31 shared
[2026-05-01 22:11:59] -rw-r--r--. 2 boincer umatlas    697385 May  1 20:31 input.tar.gz
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas         0 May  1 20:31 boinc_lockfile
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas      2472 May  1 20:31 pandaJob.out
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas      2070 May  1 20:31 stderr.txt
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas        57 May  1 20:31 setup.sh.local
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas   1002976 May  1 20:32 agis_schedconf.cvmfs.json
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas   1508687 May  1 20:32 agis_ddmendpoints.agis.ALL.json
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas       430 May  1 20:33 workernode_map.json
[2026-05-01 22:11:59] drwx------. 5 boincer umatlas      4096 May  1 20:33 pilot3
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas      7096 May  1 22:09 init_data.xml
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas 173584005 May  1 22:10 HITS.49963738._000006.pool.root.1
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas       487 May  1 22:10 boinc_task_state.xml
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas        95 May  1 22:11 pilot_heartbeat.json
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas      1060 May  1 22:11 memory_monitor_summary.json
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas    306144 May  1 22:11 log.49963738._000006.job.log.tgz.1
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas      6396 May  1 22:11 heartbeat_new.json
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas      6287 May  1 22:11 heartbeat.json
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas      8192 May  1 22:11 boinc_mmap_file
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas       823 May  1 22:11 pilotlog.txt
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas        27 May  1 22:11 wrapper_checkpoint.txt
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas    525280 May  1 22:11 log.49963738._000006.job.log.1
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas       357 May  1 22:11 output.list
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas       410 May  1 22:11 runtime_log
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas    849920 May  1 22:11 result.tar.gz
[2026-05-01 22:11:59] -rw-r--r--. 1 boincer umatlas      8954 May  1 22:11 runtime_log.err
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas       655 May  1 22:11 5ef25e6e9d48.diag
[2026-05-01 22:11:59] HITS file was successfully produced:
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas 173584005 May  1 22:10 shared/HITS.pool.root.1
[2026-05-01 22:11:59]  *** Contents of shared directory: ***
[2026-05-01 22:11:59] total 364412
[2026-05-01 22:11:59] -rw-r--r--. 2 boincer umatlas 197994739 May  1 20:31 ATLAS.root_0
[2026-05-01 22:11:59] -rw-r--r--. 2 boincer umatlas     15667 May  1 20:31 start_atlas.sh
[2026-05-01 22:11:59] -rw-r--r--. 2 boincer umatlas    697385 May  1 20:31 input.tar.gz
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas 173584005 May  1 22:10 HITS.pool.root.1
[2026-05-01 22:11:59] -rw-------. 1 boincer umatlas    849920 May  1 22:11 result.tar.gz
22:12:00 (2440538): run_atlas exited; CPU time 24369.017009
22:12:00 (2440538): called boinc_finish(0)

</stderr_txt>
]]>

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