Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:08:01 (24398): wrapper (7.7.26015): starting
09:08:01 (24398): wrapper: running run_atlas (--nthreads 8)
[2026-05-02 09:08:01] Arguments: --nthreads 8
[2026-05-02 09:08:01] Threads: 8
[2026-05-02 09:08:01] Checking for CVMFS
[2026-05-02 09:08:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-02 09:08:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-02 09:08:02] Running cvmfs_config stat atlas.cern.ch
[2026-05-02 09:08:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-02 09:08:02] 2.11.2.0 21848 23890 96804 159122 0 117 18439587 25165824 353 130560 0 7350978 99.850 7135075 5254 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-02 09:08:02] CVMFS is ok
[2026-05-02 09:08:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 09:08:02] Checking for apptainer binary...
[2026-05-02 09:08:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-02 09:08:02] Running /usr/bin/apptainer --version
[2026-05-02 09:08:02] apptainer version 1.3.2-1.el7
[2026-05-02 09:08:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 09:08:03] cg-vwn454.simple-grid.lan
[2026-05-02 09:08:03] apptainer works
[2026-05-02 09:08:03] Set ATHENA_PROC_NUMBER=8
[2026-05-02 09:08:03] Set ATHENA_CORE_NUMBER=8
[2026-05-02 09:08:03] Starting ATLAS job with PandaID=7123295259
[2026-05-02 09:08:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 12:56:08]  *** The last 200 lines of the pilot log: ***
[2026-05-02 12:56:09] 2026-05-02 10:55:12,394 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-02 12:56:09] 2026-05-02 10:55:12,394 | INFO     | log transfer has been attempted: DONE
[2026-05-02 12:56:09] 2026-05-02 10:55:12,394 | INFO     | job 7123295259 has finished - writing final server update
[2026-05-02 12:56:09] 2026-05-02 10:55:12,394 | INFO     | total number of processed events: 400 (read)
[2026-05-02 12:56:09] 2026-05-02 10:55:12,396 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7123295259/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 12:56:09] 2026-05-02 10:55:12,397 | INFO     | extracted standard info from prmon json
[2026-05-02 12:56:09] 2026-05-02 10:55:12,397 | INFO     | extracted standard memory fields from prmon json
[2026-05-02 12:56:09] 2026-05-02 10:55:12,397 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-02 12:56:09] 2026-05-02 10:55:12,397 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-02 12:56:09] 2026-05-02 10:55:12,402 | INFO     | fitting pss+swap vs Time
[2026-05-02 12:56:09] 2026-05-02 10:55:12,402 | INFO     | sum of square deviations: 3438620752.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,404 | INFO     | sum of deviations: 10294008213.000002
[2026-05-02 12:56:09] 2026-05-02 10:55:12,404 | INFO     | mean x (centered): 0.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,404 | INFO     | mean y: 2459973.8654708522
[2026-05-02 12:56:09] 2026-05-02 10:55:12,405 | INFO     | intersect: 2459973.8654708522
[2026-05-02 12:56:09] 2026-05-02 10:55:12,405 | INFO     | chi2: 3.118354168922867
[2026-05-02 12:56:09] 2026-05-02 10:55:12,406 | INFO     | sum of square deviations: 3212467674.5
[2026-05-02 12:56:09] 2026-05-02 10:55:12,407 | INFO     | sum of deviations: 39706495821.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,407 | INFO     | mean x (centered): 0.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,408 | INFO     | mean y: 2479534.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,408 | INFO     | intersect: 2479534.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,408 | INFO     | chi2: 1.4939818208261841
[2026-05-02 12:56:09] 2026-05-02 10:55:12,408 | INFO     | current chi2=1.4939818208261841 (change=52.09069464543114 %)
[2026-05-02 12:56:09] 2026-05-02 10:55:12,409 | INFO     | sum of square deviations: 2996454322.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,410 | INFO     | sum of deviations: 38738463824.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,410 | INFO     | mean x (centered): 0.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,411 | INFO     | mean y: 2478850.483568075
[2026-05-02 12:56:09] 2026-05-02 10:55:12,411 | INFO     | intersect: 2478850.483568075
[2026-05-02 12:56:09] 2026-05-02 10:55:12,411 | INFO     | chi2: 1.494422274510416
[2026-05-02 12:56:09] 2026-05-02 10:55:12,411 | INFO     | current chi2=1.494422274510416 (change=-0.029481863707577226 %)
[2026-05-02 12:56:09] 2026-05-02 10:55:12,411 | INFO     | right removable region: 212
[2026-05-02 12:56:09] 2026-05-02 10:55:12,412 | INFO     | sum of square deviations: 3212467674.5
[2026-05-02 12:56:09] 2026-05-02 10:55:12,413 | INFO     | sum of deviations: -22723740465.5
[2026-05-02 12:56:09] 2026-05-02 10:55:12,414 | INFO     | mean x (centered): 0.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,414 | INFO     | mean y: 2481992.0321100918
[2026-05-02 12:56:09] 2026-05-02 10:55:12,414 | INFO     | intersect: 2481992.0321100918
[2026-05-02 12:56:09] 2026-05-02 10:55:12,414 | INFO     | chi2: 1.6744344331341408
[2026-05-02 12:56:09] 2026-05-02 10:55:12,414 | INFO     | current chi2=1.6744344331341408 (change=46.303904482006956 %)
[2026-05-02 12:56:09] 2026-05-02 10:55:12,415 | INFO     | sum of square deviations: 2996454322.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,416 | INFO     | sum of deviations: -23088650304.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,417 | INFO     | mean x (centered): 0.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,417 | INFO     | mean y: 2482249.0985915493
[2026-05-02 12:56:09] 2026-05-02 10:55:12,417 | INFO     | intersect: 2482249.0985915493
[2026-05-02 12:56:09] 2026-05-02 10:55:12,417 | INFO     | chi2: 1.6657079874308676
[2026-05-02 12:56:09] 2026-05-02 10:55:12,417 | INFO     | current chi2=1.6657079874308676 (change=0.5211578029328607 %)
[2026-05-02 12:56:09] 2026-05-02 10:55:12,417 | INFO     | left removable region: 10
[2026-05-02 12:56:09] 2026-05-02 10:55:12,418 | INFO     | sum of square deviations: 2555770710.5
[2026-05-02 12:56:09] 2026-05-02 10:55:12,419 | INFO     | sum of deviations: 5542901578.99999
[2026-05-02 12:56:09] 2026-05-02 10:55:12,419 | INFO     | mean x (centered): 0.0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,420 | INFO     | mean y: 2503125.9603960398
[2026-05-02 12:56:09] 2026-05-02 10:55:12,420 | INFO     | intersect: 2503125.9603960398
[2026-05-02 12:56:09] 2026-05-02 10:55:12,420 | INFO     | chi2: 0.002119609773017328
[2026-05-02 12:56:09] 2026-05-02 10:55:12,420 | INFO     | current memory leak: 2.17 B/s (using 202 data points, chi2=0.00)
[2026-05-02 12:56:09] 2026-05-02 10:55:12,421 | INFO     | could have reported an average CPU frequency of 2250 MHz (11 samples)
[2026-05-02 12:56:09] 2026-05-02 10:55:12,421 | INFO     | ..............................
[2026-05-02 12:56:09] 2026-05-02 10:55:12,421 | INFO     | . Timing measurements:
[2026-05-02 12:56:09] 2026-05-02 10:55:12,421 | INFO     | . get job = 0 s
[2026-05-02 12:56:09] 2026-05-02 10:55:12,421 | INFO     | . initial setup = 9 s
[2026-05-02 12:56:09] 2026-05-02 10:55:12,422 | INFO     | . payload setup = 20 s
[2026-05-02 12:56:09] 2026-05-02 10:55:12,422 | INFO     | . stage-in = 0 s
[2026-05-02 12:56:09] 2026-05-02 10:55:12,422 | INFO     | . payload execution = 13554 s
[2026-05-02 12:56:09] 2026-05-02 10:55:12,422 | INFO     | . stage-out = 3 s
[2026-05-02 12:56:09] 2026-05-02 10:55:12,422 | INFO     | . log creation = 1 s
[2026-05-02 12:56:09] 2026-05-02 10:55:12,422 | INFO     | ..............................
[2026-05-02 12:56:09] 2026-05-02 10:55:12,500 | INFO     | 
[2026-05-02 12:56:09] 2026-05-02 10:55:12,500 | INFO     | job summary report
[2026-05-02 12:56:09] 2026-05-02 10:55:12,500 | INFO     | --------------------------------------------------
[2026-05-02 12:56:09] 2026-05-02 10:55:12,500 | INFO     | PanDA job id: 7123295259
[2026-05-02 12:56:09] 2026-05-02 10:55:12,500 | INFO     | task id: 49645815
[2026-05-02 12:56:09] 2026-05-02 10:55:12,500 | INFO     | errors: (none)
[2026-05-02 12:56:09] 2026-05-02 10:55:12,500 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-02 12:56:09] 2026-05-02 10:55:12,500 | INFO     | pilot state: finished 
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | transexitcode: 0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | exeerrorcode: 0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | exeerrordiag: 
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | exitcode: 0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | exitmsg: OK
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | cpuconsumptiontime: 64291 s
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | nevents: 400
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | neventsw: 0
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | pid: 803
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | pgrp: 803
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | corecount: 8
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | event service: False
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | sizes: {0: 2275577, 1: 2277151, 11: 2277179, 13578: 2307521, 13579: 2307520, 13583: 2316574, 13585: 2316758, 13587: 2316952}
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | --------------------------------------------------
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | 
[2026-05-02 12:56:09] 2026-05-02 10:55:12,501 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-05-02 12:56:09] 2026-05-02 10:55:13,099 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,100 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,100 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,100 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,100 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,100 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,100 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,100 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,100 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,101 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,101 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,101 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,101 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,101 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,101 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,101 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,101 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,101 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-02 12:56:09] 2026-05-02 10:55:13,101 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,101 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-02 12:56:09] 2026-05-02 10:55:13,102 | INFO     | job 7123295259 has completed (purged errors)
[2026-05-02 12:56:09] 2026-05-02 10:55:13,102 | INFO     | overall cleanup function is called
[2026-05-02 12:56:09] 2026-05-02 10:55:14,111 | INFO     | --- collectZombieJob: --- 10, [803]
[2026-05-02 12:56:09] 2026-05-02 10:55:14,111 | INFO     | zombie collector waiting for pid 803
[2026-05-02 12:56:09] 2026-05-02 10:55:14,111 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 12:56:09] 2026-05-02 10:55:14,111 | INFO     | collected zombie processes
[2026-05-02 12:56:09] 2026-05-02 10:55:14,111 | INFO     | will attempt to kill all subprocesses of pid=803
[2026-05-02 12:56:09] 2026-05-02 10:55:14,172 | INFO     | process IDs to be killed: [803] (in reverse order)
[2026-05-02 12:56:09] 2026-05-02 10:55:15,023 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 12:56:09] 2026-05-02 10:55:15,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 12:56:09] 2026-05-02 10:55:15,026 | INFO     | did not find any defunct processes belonging to 803
[2026-05-02 12:56:09] 2026-05-02 10:55:15,027 | INFO     | did not find any defunct processes belonging to 803
[2026-05-02 12:56:09] 2026-05-02 10:55:15,027 | INFO     | Ready for new job
[2026-05-02 12:56:09] 2026-05-02 10:55:15,029 | INFO     | ***************************************
[2026-05-02 12:56:09] 2026-05-02 10:55:15,029 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 12:56:09] 2026-05-02 10:55:15,029 | INFO     | ***************************************
[2026-05-02 12:56:09] 2026-05-02 10:55:15,029 | INFO     | 
[2026-05-02 12:56:09] 2026-05-02 10:55:15,030 | INFO     | pilot is running in a VM
[2026-05-02 12:56:09] 2026-05-02 10:55:15,030 | INFO     | architecture information:
[2026-05-02 12:56:09] 2026-05-02 10:55:15,037 | INFO     | executing command: cat /etc/os-release
[2026-05-02 12:56:09] 2026-05-02 10:55:15,382 | INFO     | cat /etc/os-release:
[2026-05-02 12:56:09] NAME="CentOS Linux"
[2026-05-02 12:56:09] VERSION="7 (Core)"
[2026-05-02 12:56:09] ID="centos"
[2026-05-02 12:56:09] ID_LIKE="rhel fedora"
[2026-05-02 12:56:09] VERSION_ID="7"
[2026-05-02 12:56:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 12:56:09] ANSI_COLOR="0;31"
[2026-05-02 12:56:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 12:56:09] HOME_URL="https://www.centos.org/"
[2026-05-02 12:56:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 12:56:09] 
[2026-05-02 12:56:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 12:56:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 12:56:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 12:56:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 12:56:09] 
[2026-05-02 12:56:09] 2026-05-02 10:55:15,382 | INFO     | ***************************************
[2026-05-02 12:56:09] 2026-05-02 10:55:15,886 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-05-02 12:56:09] 2026-05-02 10:55:16,148 | INFO     | sufficient remaining disk space (496547921920 B)
[2026-05-02 12:56:09] 2026-05-02 10:55:16,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 12:56:09] 2026-05-02 10:55:16,149 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 12:56:09] 2026-05-02 10:55:16,149 | INFO     | update_server=False
[2026-05-02 12:56:09] 2026-05-02 10:55:16,149 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 12:56:09] 2026-05-02 10:55:16,149 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 12:56:09] 2026-05-02 10:55:16,149 | INFO     | aborting loop
[2026-05-02 12:56:09] 2026-05-02 10:55:16,644 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 12:56:09] 2026-05-02 10:55:16,786 | INFO     | all data control threads have been joined
[2026-05-02 12:56:09] 2026-05-02 10:55:16,855 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 12:56:09] 2026-05-02 10:55:17,155 | INFO     | [job] retrieve thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:17,155 | INFO     | [job] job monitor thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:17,316 | INFO     | all job control threads have been joined
[2026-05-02 12:56:09] 2026-05-02 10:55:17,406 | INFO     | all payload control threads have been joined
[2026-05-02 12:56:09] 2026-05-02 10:55:17,515 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 12:56:09] 2026-05-02 10:55:17,590 | INFO     | [job] validate thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:17,790 | INFO     | [data] copytool_in thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:17,792 | INFO     | [data] control thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:17,911 | INFO     | [payload] validate_post thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:18,286 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:18,322 | INFO     | [job] control thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:18,403 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:18,412 | INFO     | [payload] control thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:18,483 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:18,521 | INFO     | [job] queue monitor thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:18,651 | INFO     | [data] copytool_out thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:18,680 | INFO     | [payload] failed_post thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:20,865 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:26,300 | INFO     | job.realtimelogging is not enabled
[2026-05-02 12:56:09] 2026-05-02 10:55:27,306 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 12:56:09] 2026-05-02 10:55:44,836 | INFO     | PID=28548 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-02 12:56:09] 2026-05-02 10:55:44,836 | INFO     | .. there are 2 such processes running
[2026-05-02 12:56:09] 2026-05-02 10:55:44,844 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 12:56:09] 2026-05-02 10:55:44,844 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 12:56:09] 2026-05-02 10:55:44,844 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 12:56:09] 2026-05-02 10:55:57,520 | INFO     | [monitor] cgroup control has ended
[2026-05-02 12:56:09] 2026-05-02 10:55:58,336 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140407118387008)>', '<ExcThread(monitor, started 140406540973824)>']
[2026-05-02 12:56:09] 2026-05-02 10:55:58,930 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 12:56:09] 2026-05-02 10:55:58,930 | INFO     | [monitor] control thread has ended
[2026-05-02 12:56:09] 2026-05-02 10:56:03,362 | INFO     | all workflow threads have been joined
[2026-05-02 12:56:09] 2026-05-02 10:56:03,362 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 12:56:09] 2026-05-02 10:56:03,362 | INFO     | traces error code: 0
[2026-05-02 12:56:09] 2026-05-02 10:56:03,362 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 12:56:09] 2026-05-02 10:56:03,686 [wrapper] ==== pilot stdout END ====
[2026-05-02 12:56:09] 2026-05-02 10:56:03,773 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 12:56:09] 2026-05-02 10:56:03,862 [wrapper] pilotpid: 28548
[2026-05-02 12:56:09] 2026-05-02 10:56:03,959 [wrapper] Pilot exit status: 0
[2026-05-02 12:56:09] 2026-05-02 10:56:04,113 [wrapper] pandaids: 7123295259
[2026-05-02 12:56:09] 2026-05-02 10:56:05,201 [wrapper] cleanup supervisor_pilot 25630 28549
[2026-05-02 12:56:09] 2026-05-02 10:56:05,274 [wrapper] Test setup, not cleaning
[2026-05-02 12:56:09] 2026-05-02 10:56:05,340 [wrapper] apfmon messages muted
[2026-05-02 12:56:09] 2026-05-02 10:56:05,453 [wrapper] ==== wrapper stdout END ====
[2026-05-02 12:56:09] 2026-05-02 10:56:05,537 [wrapper] ==== wrapper stderr END ====
[2026-05-02 12:56:09]  *** Error codes and diagnostics ***
[2026-05-02 12:56:09]     "exeErrorCode": 0,
[2026-05-02 12:56:09]     "pilotErrorCode": 0,
[2026-05-02 12:56:09]  *** Listing of results directory ***
[2026-05-02 12:56:09] total 418044
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc    683926 May  2 00:55 pilot3.tar.gz
[2026-05-02 12:56:09] -rwx------. 1 boinc boinc     36322 May  2 00:56 runpilot2-wrapper.sh
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc      5631 May  2 00:56 queuedata.json
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc       100 May  2 09:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 12:56:09] -rwxr-xr-x. 1 boinc boinc      7986 May  2 09:08 run_atlas
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc       105 May  2 09:08 job.xml
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc      6306 May  2 09:08 init_data.xml
[2026-05-02 12:56:09] -rw-r--r--. 2 boinc boinc 227368035 May  2 09:08 EVNT.48629115._000612.pool.root.1
[2026-05-02 12:56:09] -rw-r--r--. 2 boinc boinc     15667 May  2 09:08 start_atlas.sh
[2026-05-02 12:56:09] drwxrwx--x. 2 boinc boinc        68 May  2 09:08 shared
[2026-05-02 12:56:09] -rw-r--r--. 2 boinc boinc    697439 May  2 09:08 input.tar.gz
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc         0 May  2 09:08 boinc_lockfile
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc      2627 May  2 09:08 pandaJob.out
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc   1002976 May  2 09:08 agis_schedconf.cvmfs.json
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc       413 May  2 09:08 workernode_map.json
[2026-05-02 12:56:09] drwx------. 5 boinc boinc      4096 May  2 09:08 pilot3
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc 193298792 May  2 12:53 HITS.49645815._027482.pool.root.1
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc       488 May  2 12:54 boinc_task_state.xml
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc      1015 May  2 12:55 memory_monitor_summary.json
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc   1508687 May  2 12:55 agis_ddmendpoints.agis.ALL.json
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc    373643 May  2 12:55 log.49645815._027482.job.log.tgz.1
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc      6331 May  2 12:55 heartbeat_new.json
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc      6222 May  2 12:55 heartbeat.json
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc        95 May  2 12:55 pilot_heartbeat.json
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc      8192 May  2 12:56 boinc_mmap_file
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc      4955 May  2 12:56 pilotlog.txt
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc        28 May  2 12:56 wrapper_checkpoint.txt
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc   1270317 May  2 12:56 log.49645815._027482.job.log.1
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc       357 May  2 12:56 output.list
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc       410 May  2 12:56 runtime_log
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc   1658880 May  2 12:56 result.tar.gz
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc      8439 May  2 12:56 runtime_log.err
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc       655 May  2 12:56 2f80a652096f.diag
[2026-05-02 12:56:09] -rw-r--r--. 1 boinc boinc     20538 May  2 12:56 stderr.txt
[2026-05-02 12:56:09] HITS file was successfully produced:
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc 193298792 May  2 12:53 shared/HITS.pool.root.1
[2026-05-02 12:56:09]  *** Contents of shared directory: ***
[2026-05-02 12:56:09] total 413132
[2026-05-02 12:56:09] -rw-r--r--. 2 boinc boinc 227368035 May  2 09:08 ATLAS.root_0
[2026-05-02 12:56:09] -rw-r--r--. 2 boinc boinc     15667 May  2 09:08 start_atlas.sh
[2026-05-02 12:56:09] -rw-r--r--. 2 boinc boinc    697439 May  2 09:08 input.tar.gz
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc 193298792 May  2 12:53 HITS.pool.root.1
[2026-05-02 12:56:09] -rw-------. 1 boinc boinc   1658880 May  2 12:56 result.tar.gz
12:56:10 (24398): run_atlas exited; CPU time 64386.160563
12:56:10 (24398): called boinc_finish(0)

</stderr_txt>
]]>

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