Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:16:23 (382748): wrapper (7.7.26015): starting
01:16:23 (382748): wrapper: running run_atlas (--nthreads 12)
[2026-05-03 01:16:23] Arguments: --nthreads 12
[2026-05-03 01:16:23] Threads: 12
[2026-05-03 01:16:23] Checking for CVMFS
[2026-05-03 01:16:23] No cvmfs_config command found, will try listing directly
[2026-05-03 01:16:23] CVMFS is ok
[2026-05-03 01:16:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 01:16:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 01:16:23] Further information can be found at the LHC@home message board.
[2026-05-03 01:16:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 01:16:23] Checking for apptainer binary...
[2026-05-03 01:16:23] which: no apptainer in ((null))
[2026-05-03 01:16:23] apptainer is not installed, using version from CVMFS
[2026-05-03 01:16:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 01:16:23] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot84/slots/10/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-05-03 01:16:23] apptainer works
[2026-05-03 01:16:23] Set ATHENA_PROC_NUMBER=12
[2026-05-03 01:16:23] Set ATHENA_CORE_NUMBER=12
[2026-05-03 01:16:23] Starting ATLAS job with PandaID=7123294532
[2026-05-03 01:16:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot84/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-03 01:46:43]  *** The last 200 lines of the pilot log: ***
[2026-05-03 01:46:43]  guid=e4ab8663-48c8-4d0a-af88-b554c07959f8
[2026-05-03 01:46:43]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-03 01:46:43]  is_altstaged=None
[2026-05-03 01:46:43]  is_tar=False
[2026-05-03 01:46:43]  lfn=log.49263200._085492.job.log.tgz.1
[2026-05-03 01:46:43]  mtime=0
[2026-05-03 01:46:43]  protocol_id=None
[2026-05-03 01:46:43]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-03 01:46:43]  replicas=None
[2026-05-03 01:46:43]  scope=mc23_13p6TeV
[2026-05-03 01:46:43]  status=None
[2026-05-03 01:46:43]  status_code=0
[2026-05-03 01:46:43]  storage_token=
[2026-05-03 01:46:43]  surl=/var/lib/boinc/var/slot84/slots/10/PanDA_Pilot-7123294532/log.49263200._085492.job.log.tgz.1
[2026-05-03 01:46:43]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/65/log.49263200._085492.job.log.tgz.1
[2026-05-03 01:46:43]  workdir=None
[2026-05-03 01:46:43] ]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,238 | INFO     | transferring file log.49263200._085492.job.log.tgz.1 from /var/lib/boinc/var/slot84/slots/10/PanDA_Pilot-7123294532/log.49263200._085492.job.log.tgz.1 to /var/lib/
[2026-05-03 01:46:43] 2026-05-02 23:45:36,238 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot84/slots/10/PanDA_Pilot-7123294532/log.49263200._085492.job.log.tgz.1 /var/lib/boinc/var/slot84/slots/10/
[2026-05-03 01:46:43] 2026-05-02 23:45:36,254 | INFO     | adding to output.list: log.49263200._085492.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/12/65/log.49263200._085492.job.log.tg
[2026-05-03 01:46:43] 2026-05-02 23:45:36,255 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-03 01:46:43] 2026-05-02 23:45:36,255 | INFO     | summary of transferred files:
[2026-05-03 01:46:43] 2026-05-02 23:45:36,255 | INFO     |  -- lfn=log.49263200._085492.job.log.tgz.1, status_code=0, status=transferred
[2026-05-03 01:46:43] 2026-05-02 23:45:36,255 | INFO     | stage-out finished correctly
[2026-05-03 01:46:43] 2026-05-02 23:45:36,304 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-03 01:46:43] 2026-05-02 23:45:36,352 | INFO     | job 7123294532 has state=finished
[2026-05-03 01:46:43] 2026-05-02 23:45:36,353 | INFO     | preparing for final server update for job 7123294532 in state='finished'
[2026-05-03 01:46:43] 2026-05-02 23:45:36,353 | INFO     | reading metadata from: /var/lib/boinc/var/slot84/slots/10/PanDA_Pilot-7123294532/jobReport.json
[2026-05-03 01:46:43] 2026-05-02 23:45:36,355 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot84/slots/10/workernode_map.json
[2026-05-03 01:46:43] 2026-05-02 23:45:36,355 | INFO     | this job has now completed (state=finished)
[2026-05-03 01:46:43] 2026-05-02 23:45:36,355 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-03 01:46:43] 2026-05-02 23:45:36,355 | INFO     | log transfer has been attempted: DONE
[2026-05-03 01:46:43] 2026-05-02 23:45:36,355 | INFO     | job 7123294532 has finished - writing final server update
[2026-05-03 01:46:43] 2026-05-02 23:45:36,355 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1988973/.job.ad'
[2026-05-03 01:46:43] 2026-05-02 23:45:36,355 | INFO     | total number of processed events: 400 (read)
[2026-05-03 01:46:43] 2026-05-02 23:45:36,373 | INFO     | using path: /var/lib/boinc/var/slot84/slots/10/PanDA_Pilot-7123294532/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 01:46:43] 2026-05-02 23:45:36,373 | INFO     | extracted standard info from prmon json
[2026-05-03 01:46:43] 2026-05-02 23:45:36,373 | INFO     | extracted standard memory fields from prmon json
[2026-05-03 01:46:43] 2026-05-02 23:45:36,374 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-03 01:46:43] 2026-05-02 23:45:36,374 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-03 01:46:43] 2026-05-02 23:45:36,374 | INFO     | fitting pss+swap vs Time
[2026-05-03 01:46:43] 2026-05-02 23:45:36,374 | INFO     | sum of square deviations: 3294945.5
[2026-05-03 01:46:43] 2026-05-02 23:45:36,374 | INFO     | sum of deviations: -134728016.0
[2026-05-03 01:46:43] 2026-05-02 23:45:36,374 | INFO     | mean x (centered): 0.0
[2026-05-03 01:46:43] 2026-05-02 23:45:36,374 | INFO     | mean y: 2737561.727272727
[2026-05-03 01:46:43] 2026-05-02 23:45:36,374 | INFO     | intersect: 2737561.727272727
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | chi2: 0.001334638502868562
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | current memory leak: -40.89 B/s (using 22 data points, chi2=0.00)
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | could have reported an average CPU frequency of 3587 MHz (4 samples)
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | ..............................
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | . Timing measurements:
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | . get job = 0 s
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | . initial setup = 4 s
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | . payload setup = 6 s
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | . stage-in = 0 s
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | . payload execution = 1718 s
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | . stage-out = 0 s
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | . log creation = 0 s
[2026-05-03 01:46:43] 2026-05-02 23:45:36,375 | INFO     | ..............................
[2026-05-03 01:46:43] 2026-05-02 23:45:36,833 | INFO     | 
[2026-05-03 01:46:43] 2026-05-02 23:45:36,833 | INFO     | job summary report
[2026-05-03 01:46:43] 2026-05-02 23:45:36,833 | INFO     | --------------------------------------------------
[2026-05-03 01:46:43] 2026-05-02 23:45:36,833 | INFO     | PanDA job id: 7123294532
[2026-05-03 01:46:43] 2026-05-02 23:45:36,833 | INFO     | task id: 49263200
[2026-05-03 01:46:43] 2026-05-02 23:45:36,833 | INFO     | errors: (none)
[2026-05-03 01:46:43] 2026-05-02 23:45:36,833 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-03 01:46:43] 2026-05-02 23:45:36,833 | INFO     | pilot state: finished 
[2026-05-03 01:46:43] 2026-05-02 23:45:36,833 | INFO     | transexitcode: 0
[2026-05-03 01:46:43] 2026-05-02 23:45:36,833 | INFO     | exeerrorcode: 0
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | exeerrordiag: 
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | exitcode: 0
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | exitmsg: OK
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | cpuconsumptiontime: 18011 s
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | nevents: 400
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | neventsw: 0
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | pid: 392985
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | pgrp: 392985
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | corecount: 12
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | event service: False
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | sizes: {0: 2277121, 11: 2277121, 1728: 2301986, 1729: 2301985, 1730: 2311257}
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | --------------------------------------------------
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | 
[2026-05-03 01:46:43] 2026-05-02 23:45:36,834 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot84/slots/10
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,855 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,856 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,856 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,856 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,856 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,856 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-03 01:46:43] 2026-05-02 23:45:36,856 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,856 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-03 01:46:43] 2026-05-02 23:45:36,856 | INFO     | job 7123294532 has completed (purged errors)
[2026-05-03 01:46:43] 2026-05-02 23:45:36,856 | INFO     | overall cleanup function is called
[2026-05-03 01:46:43] 2026-05-02 23:45:37,778 | WARNING  | process 392985 can no longer be monitored (due to stat problems) - aborting
[2026-05-03 01:46:43] 2026-05-02 23:45:37,863 | INFO     | --- collectZombieJob: --- 10, [392985]
[2026-05-03 01:46:43] 2026-05-02 23:45:37,864 | INFO     | zombie collector waiting for pid 392985
[2026-05-03 01:46:43] 2026-05-02 23:45:37,864 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-03 01:46:43] 2026-05-02 23:45:37,864 | INFO     | collected zombie processes
[2026-05-03 01:46:43] 2026-05-02 23:45:37,864 | INFO     | will attempt to kill all subprocesses of pid=392985
[2026-05-03 01:46:43] 2026-05-02 23:45:38,575 | INFO     | using path: /var/lib/boinc/var/slot84/slots/10/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 01:46:43] 2026-05-02 23:45:39,104 | INFO     | process IDs to be killed: [392985] (in reverse order)
[2026-05-03 01:46:43] 2026-05-02 23:45:39,254 | WARNING  | found no corresponding commands to process id(s)
[2026-05-03 01:46:43] 2026-05-02 23:45:39,255 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-03 01:46:43] 2026-05-02 23:45:39,308 | INFO     | did not find any defunct processes belonging to 392985
[2026-05-03 01:46:43] 2026-05-02 23:45:39,312 | INFO     | number of running child processes to parent process 392985: 1
[2026-05-03 01:46:43] 2026-05-02 23:45:39,312 | INFO     | maximum number of monitored processes: 6
[2026-05-03 01:46:43] 2026-05-02 23:45:39,312 | INFO     | aborting job monitoring since job object (job id=7123294532) has expired
[2026-05-03 01:46:43] 2026-05-02 23:45:39,330 | INFO     | did not find any defunct processes belonging to 392985
[2026-05-03 01:46:43] 2026-05-02 23:45:39,330 | INFO     | Ready for new job
[2026-05-03 01:46:43] 2026-05-02 23:45:39,331 | INFO     | ***************************************
[2026-05-03 01:46:43] 2026-05-02 23:45:39,331 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-03 01:46:43] 2026-05-02 23:45:39,331 | INFO     | ***************************************
[2026-05-03 01:46:43] 2026-05-02 23:45:39,332 | INFO     | 
[2026-05-03 01:46:43] 2026-05-02 23:45:39,337 | INFO     | architecture information:
[2026-05-03 01:46:43] 2026-05-02 23:45:39,337 | INFO     | executing command: cat /etc/os-release
[2026-05-03 01:46:43] 2026-05-02 23:45:39,352 | INFO     | cat /etc/os-release:
[2026-05-03 01:46:43] NAME="CentOS Linux"
[2026-05-03 01:46:43] VERSION="7 (Core)"
[2026-05-03 01:46:43] ID="centos"
[2026-05-03 01:46:43] ID_LIKE="rhel fedora"
[2026-05-03 01:46:43] VERSION_ID="7"
[2026-05-03 01:46:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-03 01:46:43] ANSI_COLOR="0;31"
[2026-05-03 01:46:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-03 01:46:43] HOME_URL="https://www.centos.org/"
[2026-05-03 01:46:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-03 01:46:43] 
[2026-05-03 01:46:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-03 01:46:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-03 01:46:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-03 01:46:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-03 01:46:43] 
[2026-05-03 01:46:43] 2026-05-02 23:45:39,352 | INFO     | ***************************************
[2026-05-03 01:46:43] 2026-05-02 23:45:39,855 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/10
[2026-05-03 01:46:43] 2026-05-02 23:45:39,871 | INFO     | sufficient remaining disk space (244003635200 B)
[2026-05-03 01:46:43] 2026-05-02 23:45:39,871 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-03 01:46:43] 2026-05-02 23:45:39,871 | INFO     | current server update state: UPDATING_FINAL
[2026-05-03 01:46:43] 2026-05-02 23:45:39,872 | INFO     | update_server=False
[2026-05-03 01:46:43] 2026-05-02 23:45:39,872 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-03 01:46:43] 2026-05-02 23:45:39,872 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-03 01:46:43] 2026-05-02 23:45:39,872 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-03 01:46:43] 2026-05-02 23:45:39,873 | INFO     | will abort loop
[2026-05-03 01:46:43] 2026-05-02 23:45:40,001 | INFO     | all job control threads have been joined
[2026-05-03 01:46:43] 2026-05-02 23:45:40,316 | INFO     | all data control threads have been joined
[2026-05-03 01:46:43] 2026-05-02 23:45:40,361 | INFO     | job.realtimelogging is not enabled
[2026-05-03 01:46:43] 2026-05-02 23:45:40,649 | INFO     | all payload control threads have been joined
[2026-05-03 01:46:43] 2026-05-02 23:45:40,877 | INFO     | [job] retrieve thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:40,878 | INFO     | [job] job monitor thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:40,995 | INFO     | [job] validate thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:41,007 | INFO     | [job] control thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:41,060 | INFO     | [job] create_data_payload thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:41,176 | INFO     | [payload] validate_pre thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:41,321 | INFO     | [data] control thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:41,330 | INFO     | [data] copytool_in thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:41,366 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:41,415 | INFO     | [payload] execute_payloads thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:41,434 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-03 01:46:43] 2026-05-02 23:45:41,654 | INFO     | [payload] control thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:41,666 | INFO     | [payload] failed_post thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:41,878 | INFO     | [data] copytool_out thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:42,239 | INFO     | [payload] validate_post thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:42,358 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-03 01:46:43] 2026-05-02 23:45:42,440 | INFO     | [job] queue monitor thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:45:46,363 | INFO     | [data] queue_monitor thread has finished
[2026-05-03 01:46:43] 2026-05-02 23:46:09,584 | INFO     | PID=387233 has CPU usage=8.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-03 01:46:43] 2026-05-02 23:46:09,585 | INFO     | .. there are 16 such processes running
[2026-05-03 01:46:43] 2026-05-02 23:46:09,586 | INFO     | found 0 job(s) in 20 queues
[2026-05-03 01:46:43] 2026-05-02 23:46:09,586 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-03 01:46:43] 2026-05-02 23:46:09,586 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-03 01:46:43] 2026-05-02 23:46:30,171 [wrapper] supervise_pilot (15 min periods counter: 3)
[2026-05-03 01:46:43] 2026-05-02 23:46:37,459 | INFO     | [monitor] cgroup control has ended
[2026-05-03 01:46:43] 2026-05-02 23:46:38,446 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22558830544704)>', '<ExcThread(monitor, started 22558591424256)>']
[2026-05-03 01:46:43] 2026-05-02 23:46:38,720 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-03 01:46:43] 2026-05-02 23:46:38,720 | INFO     | [monitor] control thread has ended
[2026-05-03 01:46:43] 2026-05-02 23:46:43,471 | INFO     | all workflow threads have been joined
[2026-05-03 01:46:43] 2026-05-02 23:46:43,471 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-03 01:46:43] 2026-05-02 23:46:43,471 | INFO     | traces error code: 0
[2026-05-03 01:46:43] 2026-05-02 23:46:43,471 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-03 01:46:43] 2026-05-02 23:46:43,628 [wrapper] ==== pilot stdout END ====
[2026-05-03 01:46:43] 2026-05-02 23:46:43,631 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-03 01:46:43] 2026-05-02 23:46:43,633 [wrapper] pilotpid: 387233
[2026-05-03 01:46:43] 2026-05-02 23:46:43,636 [wrapper] Pilot exit status: 0
[2026-05-03 01:46:43] 2026-05-02 23:46:43,645 [wrapper] pandaids: 7123294532
[2026-05-03 01:46:43] 2026-05-02 23:46:43,755 [wrapper] cleanup supervisor_pilot  639856 387234
[2026-05-03 01:46:43] 2026-05-02 23:46:43,758 [wrapper] Test setup, not cleaning
[2026-05-03 01:46:43] 2026-05-02 23:46:43,760 [wrapper] apfmon messages muted
[2026-05-03 01:46:43] 2026-05-02 23:46:43,762 [wrapper] ==== wrapper stdout END ====
[2026-05-03 01:46:43] 2026-05-02 23:46:43,764 [wrapper] ==== wrapper stderr END ====
[2026-05-03 01:46:43]  *** Error codes and diagnostics ***
[2026-05-03 01:46:43]     "exeErrorCode": 0,
[2026-05-03 01:46:43]     "pilotErrorCode": 0,
[2026-05-03 01:46:43]  *** Listing of results directory ***
[2026-05-03 01:46:43] total 417156
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc      5631 May  2 00:55 queuedata.json
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc    683926 May  2 00:55 pilot3.tar.gz
[2026-05-03 01:46:43] -rwx------. 1 boinc boinc     36322 May  2 00:55 runpilot2-wrapper.sh
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc       100 May  3 01:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-03 01:46:43] -rwxr-xr-x. 1 boinc boinc      7986 May  3 01:16 run_atlas
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc       105 May  3 01:16 job.xml
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc      6630 May  3 01:16 init_data.xml
[2026-05-03 01:46:43] -rw-r--r--. 2 boinc boinc 225081123 May  3 01:16 EVNT.49263198._001802.pool.root.1
[2026-05-03 01:46:43] -rw-r--r--. 2 boinc boinc     15667 May  3 01:16 start_atlas.sh
[2026-05-03 01:46:43] drwxrwx--x. 2 boinc boinc      4096 May  3 01:16 shared
[2026-05-03 01:46:43] -rw-r--r--. 2 boinc boinc    697427 May  3 01:16 input.tar.gz
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc         0 May  3 01:16 boinc_lockfile
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc      2577 May  3 01:16 pandaJob.out
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc   1002972 May  3 01:16 agis_schedconf.cvmfs.json
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc   1508687 May  3 01:16 agis_ddmendpoints.agis.ALL.json
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc       444 May  3 01:16 workernode_map.json
[2026-05-03 01:46:43] drwx------. 5 boinc boinc      4096 May  3 01:16 pilot3
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc 196833577 May  3 01:45 HITS.49263200._085492.pool.root.1
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc       487 May  3 01:45 boinc_task_state.xml
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc      1026 May  3 01:45 memory_monitor_summary.json
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc    345263 May  3 01:45 log.49263200._085492.job.log.tgz.1
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc      6379 May  3 01:45 heartbeat_new.json
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc      6270 May  3 01:45 heartbeat.json
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc        95 May  3 01:46 pilot_heartbeat.json
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc      8192 May  3 01:46 boinc_mmap_file
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc        27 May  3 01:46 wrapper_checkpoint.txt
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc      4907 May  3 01:46 pilotlog.txt
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc    210684 May  3 01:46 log.49263200._085492.job.log.1
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc       357 May  3 01:46 output.list
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc       410 May  3 01:46 runtime_log
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc    573440 May  3 01:46 result.tar.gz
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc      8846 May  3 01:46 runtime_log.err
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc       659 May  3 01:46 2f5537d54320.diag
[2026-05-03 01:46:43] -rw-r--r--. 1 boinc boinc     20764 May  3 01:46 stderr.txt
[2026-05-03 01:46:43] HITS file was successfully produced:
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc 196833577 May  3 01:45 shared/HITS.pool.root.1
[2026-05-03 01:46:43]  *** Contents of shared directory: ***
[2026-05-03 01:46:43] total 413300
[2026-05-03 01:46:43] -rw-r--r--. 2 boinc boinc 225081123 May  3 01:16 ATLAS.root_0
[2026-05-03 01:46:43] -rw-r--r--. 2 boinc boinc     15667 May  3 01:16 start_atlas.sh
[2026-05-03 01:46:43] -rw-r--r--. 2 boinc boinc    697427 May  3 01:16 input.tar.gz
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc 196833577 May  3 01:45 HITS.pool.root.1
[2026-05-03 01:46:43] -rw-------. 1 boinc boinc    573440 May  3 01:46 result.tar.gz
01:46:45 (382748): run_atlas exited; CPU time 18055.891228
01:46:45 (382748): called boinc_finish(0)

</stderr_txt>
]]>

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