Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:28:19 (3719525): wrapper (7.7.26015): starting
06:28:19 (3719525): wrapper: running run_atlas (--nthreads 4)
[2026-05-04 06:28:19] Arguments: --nthreads 4
[2026-05-04 06:28:19] Threads: 4
[2026-05-04 06:28:19] Checking for CVMFS
[2026-05-04 06:28:19] No cvmfs_config command found, will try listing directly
[2026-05-04 06:28:19] CVMFS is ok
[2026-05-04 06:28:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-04 06:28:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-04 06:28:19] Further information can be found at the LHC@home message board.
[2026-05-04 06:28:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-04 06:28:19] Checking for apptainer binary...
[2026-05-04 06:28:19] which: no apptainer in ((null))
[2026-05-04 06:28:19] apptainer is not installed, using version from CVMFS
[2026-05-04 06:28:19] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-04 06:28:19] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot16/slots/29/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2026-05-04 06:28:19] apptainer works
[2026-05-04 06:28:19] Set ATHENA_PROC_NUMBER=4
[2026-05-04 06:28:19] Set ATHENA_CORE_NUMBER=4
[2026-05-04 06:28:19] Starting ATLAS job with PandaID=7123293322
[2026-05-04 06:28:19] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot16/slots/29 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-04 09:25:00]  *** The last 200 lines of the pilot log: ***
[2026-05-04 09:25:00] 2026-05-04 07:23:55,019 | INFO     | extracted standard info from prmon json
[2026-05-04 09:25:00] 2026-05-04 07:23:55,020 | INFO     | extracted standard memory fields from prmon json
[2026-05-04 09:25:00] 2026-05-04 07:23:55,020 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-04 09:25:00] 2026-05-04 07:23:55,020 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-04 09:25:00] 2026-05-04 07:23:55,023 | INFO     | fitting pss+swap vs Time
[2026-05-04 09:25:00] 2026-05-04 07:23:55,024 | INFO     | sum of square deviations: 1577789583.0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,025 | INFO     | sum of deviations: -14575137602.000004
[2026-05-04 09:25:00] 2026-05-04 07:23:55,025 | INFO     | mean x (centered): 0.0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,025 | INFO     | mean y: 2367351.2558139535
[2026-05-04 09:25:00] 2026-05-04 07:23:55,025 | INFO     | intersect: 2367351.2558139535
[2026-05-04 09:25:00] 2026-05-04 07:23:55,025 | INFO     | chi2: 1.659870690749025
[2026-05-04 09:25:00] 2026-05-04 07:23:55,026 | INFO     | sum of square deviations: 1444149868.0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,027 | INFO     | sum of deviations: -13883087783.000004
[2026-05-04 09:25:00] 2026-05-04 07:23:55,027 | INFO     | mean x (centered): 0.0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,027 | INFO     | mean y: 2368141.095808383
[2026-05-04 09:25:00] 2026-05-04 07:23:55,027 | INFO     | intersect: 2368141.095808383
[2026-05-04 09:25:00] 2026-05-04 07:23:55,027 | INFO     | chi2: 1.6578699129974939
[2026-05-04 09:25:00] 2026-05-04 07:23:55,027 | INFO     | current chi2=1.6578699129974939 (change=0.12053816979130579 %)
[2026-05-04 09:25:00] 2026-05-04 07:23:55,028 | INFO     | right removable region: 166
[2026-05-04 09:25:00] 2026-05-04 07:23:55,028 | INFO     | sum of square deviations: 1444149868.0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,029 | INFO     | sum of deviations: -37341905363.00001
[2026-05-04 09:25:00] 2026-05-04 07:23:55,029 | INFO     | mean x (centered): 0.0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,029 | INFO     | mean y: 2392952.119760479
[2026-05-04 09:25:00] 2026-05-04 07:23:55,029 | INFO     | intersect: 2392952.119760479
[2026-05-04 09:25:00] 2026-05-04 07:23:55,029 | INFO     | chi2: 0.25159200234966
[2026-05-04 09:25:00] 2026-05-04 07:23:55,030 | INFO     | current chi2=0.25159200234966 (change=84.84267456785275 %)
[2026-05-04 09:25:00] 2026-05-04 07:23:55,030 | INFO     | sum of square deviations: 1318277740.5
[2026-05-04 09:25:00] 2026-05-04 07:23:55,031 | INFO     | sum of deviations: -35731237268.00001
[2026-05-04 09:25:00] 2026-05-04 07:23:55,031 | INFO     | mean x (centered): 0.0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,031 | INFO     | mean y: 2390993.5432098764
[2026-05-04 09:25:00] 2026-05-04 07:23:55,031 | INFO     | intersect: 2390993.5432098764
[2026-05-04 09:25:00] 2026-05-04 07:23:55,031 | INFO     | chi2: 0.24735601388482842
[2026-05-04 09:25:00] 2026-05-04 07:23:55,031 | INFO     | current chi2=0.24735601388482842 (change=1.6836737357590774 %)
[2026-05-04 09:25:00] 2026-05-04 07:23:55,032 | INFO     | left removable region: 10
[2026-05-04 09:25:00] 2026-05-04 07:23:55,032 | INFO     | sum of square deviations: 1177156955.0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,033 | INFO     | sum of deviations: -34254422784.499996
[2026-05-04 09:25:00] 2026-05-04 07:23:55,033 | INFO     | mean x (centered): 0.0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,033 | INFO     | mean y: 2392909.1346153845
[2026-05-04 09:25:00] 2026-05-04 07:23:55,033 | INFO     | intersect: 2392909.1346153845
[2026-05-04 09:25:00] 2026-05-04 07:23:55,033 | INFO     | chi2: 0.23958605768077418
[2026-05-04 09:25:00] 2026-05-04 07:23:55,033 | INFO     | current memory leak: -29.10 B/s (using 156 data points, chi2=0.24)
[2026-05-04 09:25:00] 2026-05-04 07:23:55,034 | INFO     | could have reported an average CPU frequency of 2557 MHz (9 samples)
[2026-05-04 09:25:00] 2026-05-04 07:23:55,034 | INFO     | correcting setup and stagein times since remote i/o verification was done
[2026-05-04 09:25:00] 2026-05-04 07:23:55,034 | INFO     | ..............................
[2026-05-04 09:25:00] 2026-05-04 07:23:55,034 | INFO     | . Timing measurements:
[2026-05-04 09:25:00] 2026-05-04 07:23:55,034 | INFO     | . get job = 0 s
[2026-05-04 09:25:00] 2026-05-04 07:23:55,034 | INFO     | . initial setup = 6 s
[2026-05-04 09:25:00] 2026-05-04 07:23:55,035 | INFO     | . payload setup = 9 s
[2026-05-04 09:25:00] 2026-05-04 07:23:55,035 | INFO     | . stage-in = 1 s
[2026-05-04 09:25:00] 2026-05-04 07:23:55,035 | INFO     | . payload execution = 10490 s
[2026-05-04 09:25:00] 2026-05-04 07:23:55,035 | INFO     | . stage-out = 0 s
[2026-05-04 09:25:00] 2026-05-04 07:23:55,035 | INFO     | . log creation = 0 s
[2026-05-04 09:25:00] 2026-05-04 07:23:55,035 | INFO     | ..............................
[2026-05-04 09:25:00] 2026-05-04 07:23:55,418 | INFO     | 
[2026-05-04 09:25:00] 2026-05-04 07:23:55,418 | INFO     | job summary report
[2026-05-04 09:25:00] 2026-05-04 07:23:55,419 | INFO     | --------------------------------------------------
[2026-05-04 09:25:00] 2026-05-04 07:23:55,419 | INFO     | PanDA job id: 7123293322
[2026-05-04 09:25:00] 2026-05-04 07:23:55,419 | INFO     | task id: 49263200
[2026-05-04 09:25:00] 2026-05-04 07:23:55,419 | INFO     | errors: (none)
[2026-05-04 09:25:00] 2026-05-04 07:23:55,419 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-04 09:25:00] 2026-05-04 07:23:55,419 | INFO     | pilot state: finished 
[2026-05-04 09:25:00] 2026-05-04 07:23:55,419 | INFO     | transexitcode: 0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,419 | INFO     | exeerrorcode: 0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,419 | INFO     | exeerrordiag: 
[2026-05-04 09:25:00] 2026-05-04 07:23:55,419 | INFO     | exitcode: 0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,419 | INFO     | exitmsg: OK
[2026-05-04 09:25:00] 2026-05-04 07:23:55,420 | INFO     | cpuconsumptiontime: 40479 s
[2026-05-04 09:25:00] 2026-05-04 07:23:55,420 | INFO     | nevents: 400
[2026-05-04 09:25:00] 2026-05-04 07:23:55,420 | INFO     | neventsw: 0
[2026-05-04 09:25:00] 2026-05-04 07:23:55,420 | INFO     | pid: 3728230
[2026-05-04 09:25:00] 2026-05-04 07:23:55,420 | INFO     | pgrp: 3728230
[2026-05-04 09:25:00] 2026-05-04 07:23:55,420 | INFO     | corecount: 4
[2026-05-04 09:25:00] 2026-05-04 07:23:55,420 | INFO     | event service: False
[2026-05-04 09:25:00] 2026-05-04 07:23:55,420 | INFO     | sizes: {0: 2277171, 11: 2277171, 10504: 2305895, 10505: 2314917, 10506: 2314973, 10507: 2315231}
[2026-05-04 09:25:00] 2026-05-04 07:23:55,420 | INFO     | --------------------------------------------------
[2026-05-04 09:25:00] 2026-05-04 07:23:55,420 | INFO     | 
[2026-05-04 09:25:00] 2026-05-04 07:23:55,420 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot16/slots/29
[2026-05-04 09:25:00] 2026-05-04 07:23:55,441 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,441 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,441 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,441 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,441 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,441 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,442 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,442 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,442 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,442 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,442 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,442 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,442 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,442 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,442 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,442 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,442 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,442 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-04 09:25:00] 2026-05-04 07:23:55,443 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,443 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-04 09:25:00] 2026-05-04 07:23:55,443 | INFO     | job 7123293322 has completed (purged errors)
[2026-05-04 09:25:00] 2026-05-04 07:23:55,443 | INFO     | overall cleanup function is called
[2026-05-04 09:25:00] 2026-05-04 07:23:56,451 | INFO     | --- collectZombieJob: --- 10, [3728230]
[2026-05-04 09:25:00] 2026-05-04 07:23:56,451 | INFO     | zombie collector waiting for pid 3728230
[2026-05-04 09:25:00] 2026-05-04 07:23:56,451 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-04 09:25:00] 2026-05-04 07:23:56,451 | INFO     | collected zombie processes
[2026-05-04 09:25:00] 2026-05-04 07:23:56,451 | INFO     | will attempt to kill all subprocesses of pid=3728230
[2026-05-04 09:25:00] 2026-05-04 07:23:56,748 | INFO     | process IDs to be killed: [3728230] (in reverse order)
[2026-05-04 09:25:00] 2026-05-04 07:23:56,870 | WARNING  | found no corresponding commands to process id(s)
[2026-05-04 09:25:00] 2026-05-04 07:23:56,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-04 09:25:00] 2026-05-04 07:23:56,882 | INFO     | did not find any defunct processes belonging to 3728230
[2026-05-04 09:25:00] 2026-05-04 07:23:56,892 | INFO     | did not find any defunct processes belonging to 3728230
[2026-05-04 09:25:00] 2026-05-04 07:23:56,893 | INFO     | Ready for new job
[2026-05-04 09:25:00] 2026-05-04 07:23:56,895 | INFO     | ***************************************
[2026-05-04 09:25:00] 2026-05-04 07:23:56,895 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-04 09:25:00] 2026-05-04 07:23:56,895 | INFO     | ***************************************
[2026-05-04 09:25:00] 2026-05-04 07:23:56,895 | INFO     | 
[2026-05-04 09:25:00] 2026-05-04 07:23:56,899 | INFO     | architecture information:
[2026-05-04 09:25:00] 2026-05-04 07:23:56,899 | INFO     | executing command: cat /etc/os-release
[2026-05-04 09:25:00] 2026-05-04 07:23:56,914 | INFO     | cat /etc/os-release:
[2026-05-04 09:25:00] NAME="CentOS Linux"
[2026-05-04 09:25:00] VERSION="7 (Core)"
[2026-05-04 09:25:00] ID="centos"
[2026-05-04 09:25:00] ID_LIKE="rhel fedora"
[2026-05-04 09:25:00] VERSION_ID="7"
[2026-05-04 09:25:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-04 09:25:00] ANSI_COLOR="0;31"
[2026-05-04 09:25:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-04 09:25:00] HOME_URL="https://www.centos.org/"
[2026-05-04 09:25:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-04 09:25:00] 
[2026-05-04 09:25:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-04 09:25:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-04 09:25:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-04 09:25:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-04 09:25:00] 
[2026-05-04 09:25:00] 2026-05-04 07:23:56,914 | INFO     | ***************************************
[2026-05-04 09:25:00] 2026-05-04 07:23:57,288 | WARNING  | process 3728230 can no longer be monitored (due to stat problems) - aborting
[2026-05-04 09:25:00] 2026-05-04 07:23:57,417 | INFO     | executing command: df -mP /var/lib/boinc/var/slot16/slots/29
[2026-05-04 09:25:00] 2026-05-04 07:23:57,435 | INFO     | sufficient remaining disk space (43726667776 B)
[2026-05-04 09:25:00] 2026-05-04 07:23:57,435 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-04 09:25:00] 2026-05-04 07:23:57,436 | INFO     | current server update state: UPDATING_FINAL
[2026-05-04 09:25:00] 2026-05-04 07:23:57,436 | INFO     | update_server=False
[2026-05-04 09:25:00] 2026-05-04 07:23:57,436 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-04 09:25:00] 2026-05-04 07:23:57,567 | INFO     | using path: /var/lib/boinc/var/slot16/slots/29/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 09:25:00] 2026-05-04 07:23:57,568 | INFO     | using path: /var/lib/boinc/var/slot16/slots/29/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 09:25:00] 2026-05-04 07:23:57,568 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-05-04 09:25:00] 2026-05-04 07:23:57,569 | WARNING  | maxPSS not found in memory monitor output
[2026-05-04 09:25:00] 2026-05-04 07:23:57,569 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot16/slots/29/PanDA_Pilot-7123293322/payload.stdout) since it has not been created yet
[2026-05-04 09:25:00] 2026-05-04 07:23:57,569 | INFO     | executing command: df -mP /var/lib/boinc/var/slot16/slots/29
[2026-05-04 09:25:00] 2026-05-04 07:23:57,584 | INFO     | sufficient remaining disk space (43726667776 B)
[2026-05-04 09:25:00] 2026-05-04 07:23:57,584 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-05-04 09:25:00] 2026-05-04 07:23:57,584 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot16/slots/29/PanDA_Pilot-7123293322/HITS.49263200._085171.pool.root.1 since it does not exist
[2026-05-04 09:25:00] 2026-05-04 07:23:57,897 | INFO     | number of running child processes to parent process 3728230: 1
[2026-05-04 09:25:00] 2026-05-04 07:23:57,897 | INFO     | maximum number of monitored processes: 6
[2026-05-04 09:25:00] 2026-05-04 07:23:57,897 | INFO     | aborting job monitoring since job object (job id=7123293322) has expired
[2026-05-04 09:25:00] 2026-05-04 07:23:57,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-04 09:25:00] 2026-05-04 07:23:57,897 | INFO     | will abort loop
[2026-05-04 09:25:00] 2026-05-04 07:23:57,987 | INFO     | all job control threads have been joined
[2026-05-04 09:25:00] 2026-05-04 07:23:58,065 | INFO     | all payload control threads have been joined
[2026-05-04 09:25:00] 2026-05-04 07:23:58,440 | INFO     | [job] retrieve thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:23:58,455 | INFO     | all data control threads have been joined
[2026-05-04 09:25:00] 2026-05-04 07:23:58,498 | INFO     | [payload] failed_post thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:23:58,697 | INFO     | [payload] execute_payloads thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:23:58,758 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:23:58,885 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-04 09:25:00] 2026-05-04 07:23:58,903 | INFO     | [job] job monitor thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:23:58,993 | INFO     | [job] control thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:23:59,069 | INFO     | [payload] control thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:23:59,188 | INFO     | [payload] validate_post thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:23:59,264 | INFO     | [data] copytool_in thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:23:59,459 | INFO     | [data] control thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:23:59,530 | INFO     | [job] validate thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:23:59,655 | INFO     | [job] create_data_payload thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:23:59,758 | INFO     | [payload] validate_pre thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:24:00,139 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-04 09:25:00] 2026-05-04 07:24:00,542 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-04 09:25:00] 2026-05-04 07:24:00,891 | INFO     | [data] copytool_out thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:24:01,144 | INFO     | [job] queue monitor thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:24:04,548 | INFO     | [data] queue_monitor thread has finished
[2026-05-04 09:25:00] 2026-05-04 07:24:28,811 | INFO     | PID=3723314 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-04 09:25:00] 2026-05-04 07:24:28,812 | INFO     | .. there are 12 such processes running
[2026-05-04 09:25:00] 2026-05-04 07:24:28,812 | INFO     | found 0 job(s) in 20 queues
[2026-05-04 09:25:00] 2026-05-04 07:24:28,812 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-04 09:25:00] 2026-05-04 07:24:28,812 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-04 09:25:00] 2026-05-04 07:24:53,242 | INFO     | [monitor] cgroup control has ended
[2026-05-04 09:25:00] 2026-05-04 07:24:55,266 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22820479801152)>', '<ExcThread(monitor, started 22820244698880)>']
[2026-05-04 09:25:00] 2026-05-04 07:24:55,929 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-04 09:25:00] 2026-05-04 07:24:55,930 | INFO     | [monitor] control thread has ended
[2026-05-04 09:25:00] 2026-05-04 07:25:00,290 | INFO     | all workflow threads have been joined
[2026-05-04 09:25:00] 2026-05-04 07:25:00,290 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-04 09:25:00] 2026-05-04 07:25:00,291 | INFO     | traces error code: 0
[2026-05-04 09:25:00] 2026-05-04 07:25:00,291 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-04 09:25:00] 2026-05-04 07:25:00,423 [wrapper] ==== pilot stdout END ====
[2026-05-04 09:25:00] 2026-05-04 07:25:00,426 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-04 09:25:00] 2026-05-04 07:25:00,428 [wrapper] pilotpid: 3723314
[2026-05-04 09:25:00] 2026-05-04 07:25:00,430 [wrapper] Pilot exit status: 0
[2026-05-04 09:25:00] 2026-05-04 07:25:00,440 [wrapper] pandaids: 7123293322
[2026-05-04 09:25:00] 2026-05-04 07:25:00,517 [wrapper] cleanup supervisor_pilot 3963598 3723315
[2026-05-04 09:25:00] 2026-05-04 07:25:00,520 [wrapper] Test setup, not cleaning
[2026-05-04 09:25:00] 2026-05-04 07:25:00,523 [wrapper] apfmon messages muted
[2026-05-04 09:25:00] 2026-05-04 07:25:00,525 [wrapper] ==== wrapper stdout END ====
[2026-05-04 09:25:00] 2026-05-04 07:25:00,528 [wrapper] ==== wrapper stderr END ====
[2026-05-04 09:25:00]  *** Error codes and diagnostics ***
[2026-05-04 09:25:00]     "exeErrorCode": 0,
[2026-05-04 09:25:00]     "pilotErrorCode": 0,
[2026-05-04 09:25:00]  *** Listing of results directory ***
[2026-05-04 09:25:00] total 412740
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc      5631 May  2 00:55 queuedata.json
[2026-05-04 09:25:00] -rwx------. 1 boinc boinc     36322 May  2 00:55 runpilot2-wrapper.sh
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc    683926 May  2 00:55 pilot3.tar.gz
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc       100 May  4 06:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-04 09:25:00] -rwxr-xr-x. 1 boinc boinc      7986 May  4 06:28 run_atlas
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc       105 May  4 06:28 job.xml
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc      6483 May  4 06:28 init_data.xml
[2026-05-04 09:25:00] -rw-r--r--. 2 boinc boinc 222462117 May  4 06:28 EVNT.49263198._001777.pool.root.1
[2026-05-04 09:25:00] -rw-r--r--. 2 boinc boinc     15667 May  4 06:28 start_atlas.sh
[2026-05-04 09:25:00] drwxrwx--x. 2 boinc boinc      4096 May  4 06:28 shared
[2026-05-04 09:25:00] -rw-r--r--. 2 boinc boinc    697422 May  4 06:28 input.tar.gz
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc         0 May  4 06:28 boinc_lockfile
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc      2577 May  4 06:28 pandaJob.out
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc   1003025 May  4 06:28 agis_schedconf.cvmfs.json
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc   1508687 May  4 06:28 agis_ddmendpoints.agis.ALL.json
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc       452 May  4 06:28 workernode_map.json
[2026-05-04 09:25:00] drwx------. 5 boinc boinc      4096 May  4 06:28 pilot3
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc 193420512 May  4 09:23 HITS.49263200._085171.pool.root.1
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc       488 May  4 09:23 boinc_task_state.xml
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc        95 May  4 09:23 pilot_heartbeat.json
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc      1034 May  4 09:23 memory_monitor_summary.json
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc    311344 May  4 09:23 log.49263200._085171.job.log.tgz.1
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc      6434 May  4 09:23 heartbeat_new.json
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc      6325 May  4 09:23 heartbeat.json
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc      8192 May  4 09:24 boinc_mmap_file
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc        28 May  4 09:24 wrapper_checkpoint.txt
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc      6378 May  4 09:25 pilotlog.txt
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc   1002761 May  4 09:25 log.49263200._085171.job.log.1
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc       357 May  4 09:25 output.list
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc       410 May  4 09:25 runtime_log
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc   1331200 May  4 09:25 result.tar.gz
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc      8845 May  4 09:25 runtime_log.err
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc       664 May  4 09:25 2f4860cfa49e.diag
[2026-05-04 09:25:00] -rw-r--r--. 1 boinc boinc     21239 May  4 09:25 stderr.txt
[2026-05-04 09:25:00] HITS file was successfully produced:
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc 193420512 May  4 09:23 shared/HITS.pool.root.1
[2026-05-04 09:25:00]  *** Contents of shared directory: ***
[2026-05-04 09:25:00] total 408144
[2026-05-04 09:25:00] -rw-r--r--. 2 boinc boinc 222462117 May  4 06:28 ATLAS.root_0
[2026-05-04 09:25:00] -rw-r--r--. 2 boinc boinc     15667 May  4 06:28 start_atlas.sh
[2026-05-04 09:25:00] -rw-r--r--. 2 boinc boinc    697422 May  4 06:28 input.tar.gz
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc 193420512 May  4 09:23 HITS.pool.root.1
[2026-05-04 09:25:00] -rw-------. 1 boinc boinc   1331200 May  4 09:25 result.tar.gz
09:25:01 (3719525): run_atlas exited; CPU time 40864.545155
09:25:01 (3719525): called boinc_finish(0)

</stderr_txt>
]]>

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