Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:29:49 (4777): wrapper (7.7.26015): starting
11:29:49 (4777): wrapper: running run_atlas (--nthreads 8)
[2026-05-02 11:29:49] Arguments: --nthreads 8
[2026-05-02 11:29:49] Threads: 8
[2026-05-02 11:29:49] Checking for CVMFS
[2026-05-02 11:29:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-02 11:29:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-02 11:29:54] Running cvmfs_config stat atlas.cern.ch
[2026-05-02 11:29:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-02 11:29:56] 2.11.2.0 6411 24025 98728 159126 1 53 20536830 25165824 96 130560 0 9248437 99.867 3879912 5325 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-02 11:29:56] CVMFS is ok
[2026-05-02 11:29:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 11:29:56] Checking for apptainer binary...
[2026-05-02 11:29:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-02 11:29:56] Running /usr/bin/apptainer --version
[2026-05-02 11:29:56] apptainer version 1.3.2-1.el7
[2026-05-02 11:29:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 11:30:09] cg-vwn379.simple-grid.lan
[2026-05-02 11:30:09] apptainer works
[2026-05-02 11:30:09] Set ATHENA_PROC_NUMBER=8
[2026-05-02 11:30:09] Set ATHENA_CORE_NUMBER=8
[2026-05-02 11:30:09] Starting ATLAS job with PandaID=7122781509
[2026-05-02 11:30:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 16:25:21]  *** The last 200 lines of the pilot log: ***
[2026-05-02 16:25:21] 2026-05-02 14:24:17,515 | INFO     | log transfer has been attempted: DONE
[2026-05-02 16:25:21] 2026-05-02 14:24:17,515 | INFO     | job 7122781509 has finished - writing final server update
[2026-05-02 16:25:21] 2026-05-02 14:24:17,515 | INFO     | total number of processed events: 400 (read)
[2026-05-02 16:25:21] 2026-05-02 14:24:17,517 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7122781509/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 16:25:21] 2026-05-02 14:24:17,518 | INFO     | extracted standard info from prmon json
[2026-05-02 16:25:21] 2026-05-02 14:24:17,518 | INFO     | extracted standard memory fields from prmon json
[2026-05-02 16:25:21] 2026-05-02 14:24:17,518 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-02 16:25:21] 2026-05-02 14:24:17,518 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-02 16:25:21] 2026-05-02 14:24:17,533 | INFO     | fitting pss+swap vs Time
[2026-05-02 16:25:21] 2026-05-02 14:24:17,533 | INFO     | sum of square deviations: 6519285025.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,536 | INFO     | sum of deviations: 149491274552.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,536 | INFO     | mean x (centered): 0.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,536 | INFO     | mean y: 2422759.579710145
[2026-05-02 16:25:21] 2026-05-02 14:24:17,537 | INFO     | intersect: 2422759.579710145
[2026-05-02 16:25:21] 2026-05-02 14:24:17,537 | INFO     | chi2: 8.774100108646131
[2026-05-02 16:25:21] 2026-05-02 14:24:17,538 | INFO     | sum of square deviations: 6171352920.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,540 | INFO     | sum of deviations: 164773116552.00003
[2026-05-02 16:25:21] 2026-05-02 14:24:17,541 | INFO     | mean x (centered): 0.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,541 | INFO     | mean y: 2429339.6420664205
[2026-05-02 16:25:21] 2026-05-02 14:24:17,541 | INFO     | intersect: 2429339.6420664205
[2026-05-02 16:25:21] 2026-05-02 14:24:17,541 | INFO     | chi2: 8.069676414737993
[2026-05-02 16:25:21] 2026-05-02 14:24:17,541 | INFO     | current chi2=8.069676414737993 (change=8.028443774125492 %)
[2026-05-02 16:25:21] 2026-05-02 14:24:17,542 | INFO     | right removable region: 270
[2026-05-02 16:25:21] 2026-05-02 14:24:17,542 | INFO     | sum of square deviations: 6171352920.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,545 | INFO     | sum of deviations: 52167413317.00004
[2026-05-02 16:25:21] 2026-05-02 14:24:17,545 | INFO     | mean x (centered): 0.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,545 | INFO     | mean y: 2465398.8044280442
[2026-05-02 16:25:21] 2026-05-02 14:24:17,545 | INFO     | intersect: 2465398.8044280442
[2026-05-02 16:25:21] 2026-05-02 14:24:17,546 | INFO     | chi2: 3.6191355076843266
[2026-05-02 16:25:21] 2026-05-02 14:24:17,546 | INFO     | current chi2=3.6191355076843266 (change=58.752060463522916 %)
[2026-05-02 16:25:21] 2026-05-02 14:24:17,554 | INFO     | sum of square deviations: 5836025702.5
[2026-05-02 16:25:21] 2026-05-02 14:24:17,557 | INFO     | sum of deviations: -20027792639.499996
[2026-05-02 16:25:21] 2026-05-02 14:24:17,557 | INFO     | mean x (centered): 0.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,557 | INFO     | mean y: 2498192.612781955
[2026-05-02 16:25:21] 2026-05-02 14:24:17,558 | INFO     | intersect: 2498192.612781955
[2026-05-02 16:25:21] 2026-05-02 14:24:17,558 | INFO     | chi2: 0.9680931414064758
[2026-05-02 16:25:21] 2026-05-02 14:24:17,558 | INFO     | current chi2=0.9680931414064758 (change=73.2507075418709 %)
[2026-05-02 16:25:21] 2026-05-02 14:24:17,559 | INFO     | sum of square deviations: 5513070810.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,561 | INFO     | sum of deviations: -30360316466.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,561 | INFO     | mean x (centered): 0.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,562 | INFO     | mean y: 2503037.83908046
[2026-05-02 16:25:21] 2026-05-02 14:24:17,562 | INFO     | intersect: 2503037.83908046
[2026-05-02 16:25:21] 2026-05-02 14:24:17,562 | INFO     | chi2: 0.8831274325592825
[2026-05-02 16:25:21] 2026-05-02 14:24:17,562 | INFO     | current chi2=0.8831274325592825 (change=8.776604772114439 %)
[2026-05-02 16:25:21] 2026-05-02 14:24:17,562 | INFO     | left removable region: 15
[2026-05-02 16:25:21] 2026-05-02 14:24:17,563 | INFO     | sum of square deviations: 5141528960.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,565 | INFO     | sum of deviations: -12686734433.000002
[2026-05-02 16:25:21] 2026-05-02 14:24:17,566 | INFO     | mean x (centered): 0.0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,566 | INFO     | mean y: 2511577.5529411766
[2026-05-02 16:25:21] 2026-05-02 14:24:17,566 | INFO     | intersect: 2511577.5529411766
[2026-05-02 16:25:21] 2026-05-02 14:24:17,566 | INFO     | chi2: 0.09327674585800434
[2026-05-02 16:25:21] 2026-05-02 14:24:17,566 | INFO     | current memory leak: -2.47 B/s (using 255 data points, chi2=0.09)
[2026-05-02 16:25:21] 2026-05-02 14:24:17,567 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-05-02 16:25:21] 2026-05-02 14:24:17,567 | INFO     | ..............................
[2026-05-02 16:25:21] 2026-05-02 14:24:17,568 | INFO     | . Timing measurements:
[2026-05-02 16:25:21] 2026-05-02 14:24:17,568 | INFO     | . get job = 0 s
[2026-05-02 16:25:21] 2026-05-02 14:24:17,568 | INFO     | . initial setup = 108 s
[2026-05-02 16:25:21] 2026-05-02 14:24:17,568 | INFO     | . payload setup = 288 s
[2026-05-02 16:25:21] 2026-05-02 14:24:17,568 | INFO     | . stage-in = 0 s
[2026-05-02 16:25:21] 2026-05-02 14:24:17,568 | INFO     | . payload execution = 16946 s
[2026-05-02 16:25:21] 2026-05-02 14:24:17,568 | INFO     | . stage-out = 4 s
[2026-05-02 16:25:21] 2026-05-02 14:24:17,568 | INFO     | . log creation = 1 s
[2026-05-02 16:25:21] 2026-05-02 14:24:17,568 | INFO     | ..............................
[2026-05-02 16:25:21] 2026-05-02 14:24:17,696 | INFO     | 
[2026-05-02 16:25:21] 2026-05-02 14:24:17,696 | INFO     | job summary report
[2026-05-02 16:25:21] 2026-05-02 14:24:17,696 | INFO     | --------------------------------------------------
[2026-05-02 16:25:21] 2026-05-02 14:24:17,697 | INFO     | PanDA job id: 7122781509
[2026-05-02 16:25:21] 2026-05-02 14:24:17,697 | INFO     | task id: 49645815
[2026-05-02 16:25:21] 2026-05-02 14:24:17,697 | INFO     | errors: (none)
[2026-05-02 16:25:21] 2026-05-02 14:24:17,697 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-02 16:25:21] 2026-05-02 14:24:17,697 | INFO     | pilot state: finished 
[2026-05-02 16:25:21] 2026-05-02 14:24:17,697 | INFO     | transexitcode: 0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,697 | INFO     | exeerrorcode: 0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,697 | INFO     | exeerrordiag: 
[2026-05-02 16:25:21] 2026-05-02 14:24:17,697 | INFO     | exitcode: 0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,698 | INFO     | exitmsg: OK
[2026-05-02 16:25:21] 2026-05-02 14:24:17,698 | INFO     | cpuconsumptiontime: 70020 s
[2026-05-02 16:25:21] 2026-05-02 14:24:17,698 | INFO     | nevents: 400
[2026-05-02 16:25:21] 2026-05-02 14:24:17,698 | INFO     | neventsw: 0
[2026-05-02 16:25:21] 2026-05-02 14:24:17,698 | INFO     | pid: 13249
[2026-05-02 16:25:21] 2026-05-02 14:24:17,698 | INFO     | pgrp: 13249
[2026-05-02 16:25:21] 2026-05-02 14:24:17,698 | INFO     | corecount: 8
[2026-05-02 16:25:21] 2026-05-02 14:24:17,698 | INFO     | event service: False
[2026-05-02 16:25:21] 2026-05-02 14:24:17,698 | INFO     | sizes: {0: 2274748, 1: 2275660, 2: 2277262, 13: 2277262, 17238: 2309280, 17243: 2318278, 17244: 2318656}
[2026-05-02 16:25:21] 2026-05-02 14:24:17,698 | INFO     | --------------------------------------------------
[2026-05-02 16:25:21] 2026-05-02 14:24:17,699 | INFO     | 
[2026-05-02 16:25:21] 2026-05-02 14:24:17,699 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-05-02 16:25:21] 2026-05-02 14:24:18,322 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,322 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,323 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,323 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,323 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,323 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,323 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,323 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,323 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,323 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,324 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,324 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,324 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,324 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,324 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,324 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,324 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,324 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-02 16:25:21] 2026-05-02 14:24:18,324 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,325 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-02 16:25:21] 2026-05-02 14:24:18,325 | INFO     | job 7122781509 has completed (purged errors)
[2026-05-02 16:25:21] 2026-05-02 14:24:18,325 | INFO     | overall cleanup function is called
[2026-05-02 16:25:21] 2026-05-02 14:24:19,380 | INFO     | --- collectZombieJob: --- 10, [13249]
[2026-05-02 16:25:21] 2026-05-02 14:24:19,380 | INFO     | zombie collector waiting for pid 13249
[2026-05-02 16:25:21] 2026-05-02 14:24:19,381 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 16:25:21] 2026-05-02 14:24:19,381 | INFO     | collected zombie processes
[2026-05-02 16:25:21] 2026-05-02 14:24:19,381 | INFO     | will attempt to kill all subprocesses of pid=13249
[2026-05-02 16:25:21] 2026-05-02 14:24:19,440 | INFO     | process IDs to be killed: [13249] (in reverse order)
[2026-05-02 16:25:21] 2026-05-02 14:24:20,406 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 16:25:21] 2026-05-02 14:24:20,406 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 16:25:21] 2026-05-02 14:24:20,408 | INFO     | did not find any defunct processes belonging to 13249
[2026-05-02 16:25:21] 2026-05-02 14:24:20,410 | INFO     | did not find any defunct processes belonging to 13249
[2026-05-02 16:25:21] 2026-05-02 14:24:20,410 | INFO     | Ready for new job
[2026-05-02 16:25:21] 2026-05-02 14:24:20,412 | INFO     | ***************************************
[2026-05-02 16:25:21] 2026-05-02 14:24:20,412 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 16:25:21] 2026-05-02 14:24:20,412 | INFO     | ***************************************
[2026-05-02 16:25:21] 2026-05-02 14:24:20,412 | INFO     | 
[2026-05-02 16:25:21] 2026-05-02 14:24:20,413 | INFO     | pilot is running in a VM
[2026-05-02 16:25:21] 2026-05-02 14:24:20,413 | INFO     | architecture information:
[2026-05-02 16:25:21] 2026-05-02 14:24:20,428 | INFO     | executing command: cat /etc/os-release
[2026-05-02 16:25:21] 2026-05-02 14:24:20,774 | INFO     | cat /etc/os-release:
[2026-05-02 16:25:21] NAME="CentOS Linux"
[2026-05-02 16:25:21] VERSION="7 (Core)"
[2026-05-02 16:25:21] ID="centos"
[2026-05-02 16:25:21] ID_LIKE="rhel fedora"
[2026-05-02 16:25:21] VERSION_ID="7"
[2026-05-02 16:25:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 16:25:21] ANSI_COLOR="0;31"
[2026-05-02 16:25:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 16:25:21] HOME_URL="https://www.centos.org/"
[2026-05-02 16:25:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 16:25:21] 
[2026-05-02 16:25:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 16:25:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 16:25:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 16:25:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 16:25:21] 
[2026-05-02 16:25:21] 2026-05-02 14:24:20,774 | INFO     | ***************************************
[2026-05-02 16:25:21] 2026-05-02 14:24:21,277 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-05-02 16:25:21] 2026-05-02 14:24:21,436 | INFO     | sufficient remaining disk space (496918069248 B)
[2026-05-02 16:25:21] 2026-05-02 14:24:21,436 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 16:25:21] 2026-05-02 14:24:21,436 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 16:25:21] 2026-05-02 14:24:21,437 | INFO     | update_server=False
[2026-05-02 16:25:21] 2026-05-02 14:24:21,437 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 16:25:21] 2026-05-02 14:24:21,671 | INFO     | all data control threads have been joined
[2026-05-02 16:25:21] 2026-05-02 14:24:21,830 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-02 16:25:21] 2026-05-02 14:24:21,831 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-02 16:25:21] 2026-05-02 14:24:21,831 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 16:25:21] 2026-05-02 14:24:21,831 | INFO     | will abort loop
[2026-05-02 16:25:21] 2026-05-02 14:24:22,052 | INFO     | all job control threads have been joined
[2026-05-02 16:25:21] 2026-05-02 14:24:22,145 | INFO     | all payload control threads have been joined
[2026-05-02 16:25:21] 2026-05-02 14:24:22,380 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 16:25:21] 2026-05-02 14:24:22,442 | INFO     | [job] retrieve thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:22,477 | INFO     | [payload] validate_post thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:22,677 | INFO     | [data] control thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:22,710 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 16:25:21] 2026-05-02 14:24:22,836 | INFO     | [job] job monitor thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:23,058 | INFO     | [job] control thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:23,098 | INFO     | [job] validate thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:23,151 | INFO     | [payload] control thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:23,208 | INFO     | [payload] failed_post thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:23,236 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:23,310 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:23,416 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:23,521 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 16:25:21] 2026-05-02 14:24:23,648 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:23,716 | INFO     | [job] queue monitor thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:23,850 | INFO     | [data] copytool_in thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:24,387 | INFO     | [data] copytool_out thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:27,530 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 16:25:21] 2026-05-02 14:24:50,596 | INFO     | PID=8786 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-05-02 16:25:21] 2026-05-02 14:24:50,596 | INFO     | .. there are 2 such processes running
[2026-05-02 16:25:21] 2026-05-02 14:24:50,602 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 16:25:21] 2026-05-02 14:24:50,603 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 16:25:21] 2026-05-02 14:24:50,603 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 16:25:21] 2026-05-02 14:25:09,624 | INFO     | [monitor] cgroup control has ended
[2026-05-02 16:25:21] 2026-05-02 14:25:10,766 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140445100881728)>', '<ExcThread(monitor, started 140444356835072)>']
[2026-05-02 16:25:21] 2026-05-02 14:25:11,728 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 16:25:21] 2026-05-02 14:25:11,729 | INFO     | [monitor] control thread has ended
[2026-05-02 16:25:21] 2026-05-02 14:25:15,791 | INFO     | all workflow threads have been joined
[2026-05-02 16:25:21] 2026-05-02 14:25:15,792 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 16:25:21] 2026-05-02 14:25:15,792 | INFO     | traces error code: 0
[2026-05-02 16:25:21] 2026-05-02 14:25:15,792 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 16:25:21] 2026-05-02 14:25:16,177 [wrapper] ==== pilot stdout END ====
[2026-05-02 16:25:21] 2026-05-02 14:25:16,246 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 16:25:21] 2026-05-02 14:25:16,366 [wrapper] pilotpid: 8786
[2026-05-02 16:25:21] 2026-05-02 14:25:16,460 [wrapper] Pilot exit status: 0
[2026-05-02 16:25:21] 2026-05-02 14:25:17,026 [wrapper] pandaids: 7122781509
[2026-05-02 16:25:21] 2026-05-02 14:25:18,148 [wrapper] cleanup supervisor_pilot 32112 8787
[2026-05-02 16:25:21] 2026-05-02 14:25:18,246 [wrapper] Test setup, not cleaning
[2026-05-02 16:25:21] 2026-05-02 14:25:18,363 [wrapper] apfmon messages muted
[2026-05-02 16:25:21] 2026-05-02 14:25:18,471 [wrapper] ==== wrapper stdout END ====
[2026-05-02 16:25:21] 2026-05-02 14:25:18,589 [wrapper] ==== wrapper stderr END ====
[2026-05-02 16:25:21]  *** Error codes and diagnostics ***
[2026-05-02 16:25:21]     "exeErrorCode": 0,
[2026-05-02 16:25:21]     "pilotErrorCode": 0,
[2026-05-02 16:25:21]  *** Listing of results directory ***
[2026-05-02 16:25:21] total 415036
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc    683926 May  1 23:37 pilot3.tar.gz
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc      5631 May  1 23:39 queuedata.json
[2026-05-02 16:25:21] -rwx------. 1 boinc boinc     36322 May  1 23:39 runpilot2-wrapper.sh
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc       100 May  2 11:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 16:25:21] -rwxr-xr-x. 1 boinc boinc      7986 May  2 11:29 run_atlas
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc       105 May  2 11:29 job.xml
[2026-05-02 16:25:21] -rw-r--r--. 2 boinc boinc 226427891 May  2 11:29 EVNT.48629115._000580.pool.root.1
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc      6307 May  2 11:29 init_data.xml
[2026-05-02 16:25:21] -rw-r--r--. 2 boinc boinc     15667 May  2 11:29 start_atlas.sh
[2026-05-02 16:25:21] drwxrwx--x. 2 boinc boinc        68 May  2 11:29 shared
[2026-05-02 16:25:21] -rw-r--r--. 2 boinc boinc    697445 May  2 11:29 input.tar.gz
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc         0 May  2 11:29 boinc_lockfile
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc      2629 May  2 11:30 pandaJob.out
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc       415 May  2 11:36 workernode_map.json
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc   1002992 May  2 11:36 agis_schedconf.cvmfs.json
[2026-05-02 16:25:21] drwx------. 5 boinc boinc      4096 May  2 11:36 pilot3
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc 190434525 May  2 16:22 HITS.49645815._026741.pool.root.1
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc       489 May  2 16:23 boinc_task_state.xml
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc      1030 May  2 16:24 memory_monitor_summary.json
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc   1508687 May  2 16:24 agis_ddmendpoints.agis.ALL.json
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc    411691 May  2 16:24 log.49645815._026741.job.log.tgz.1
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc      6343 May  2 16:24 heartbeat_new.json
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc      6234 May  2 16:24 heartbeat.json
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc        95 May  2 16:24 pilot_heartbeat.json
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc      8192 May  2 16:24 boinc_mmap_file
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc        28 May  2 16:24 wrapper_checkpoint.txt
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc      5068 May  2 16:25 pilotlog.txt
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc   1593267 May  2 16:25 log.49645815._026741.job.log.1
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc       357 May  2 16:25 output.list
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc       410 May  2 16:25 runtime_log
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc   2027520 May  2 16:25 result.tar.gz
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc      8439 May  2 16:25 runtime_log.err
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc       655 May  2 16:25 1da43e5257ab.diag
[2026-05-02 16:25:21] -rw-r--r--. 1 boinc boinc     20609 May  2 16:25 stderr.txt
[2026-05-02 16:25:21] HITS file was successfully produced:
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc 190434525 May  2 16:22 shared/HITS.pool.root.1
[2026-05-02 16:25:21]  *** Contents of shared directory: ***
[2026-05-02 16:25:21] total 409776
[2026-05-02 16:25:21] -rw-r--r--. 2 boinc boinc 226427891 May  2 11:29 ATLAS.root_0
[2026-05-02 16:25:21] -rw-r--r--. 2 boinc boinc     15667 May  2 11:29 start_atlas.sh
[2026-05-02 16:25:21] -rw-r--r--. 2 boinc boinc    697445 May  2 11:29 input.tar.gz
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc 190434525 May  2 16:22 HITS.pool.root.1
[2026-05-02 16:25:21] -rw-------. 1 boinc boinc   2027520 May  2 16:25 result.tar.gz
16:25:23 (4777): run_atlas exited; CPU time 70185.999167
16:25:23 (4777): called boinc_finish(0)

</stderr_txt>
]]>

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