Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:21:26 (2177197): wrapper (7.7.26015): starting
04:21:26 (2177197): wrapper: running run_atlas (--nthreads 12)
[2026-05-03 04:21:26] Arguments: --nthreads 12
[2026-05-03 04:21:26] Threads: 12
[2026-05-03 04:21:26] Checking for CVMFS
[2026-05-03 04:21:26] No cvmfs_config command found, will try listing directly
[2026-05-03 04:21:26] CVMFS is ok
[2026-05-03 04:21:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 04:21:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 04:21:26] Further information can be found at the LHC@home message board.
[2026-05-03 04:21:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 04:21:26] Checking for apptainer binary...
[2026-05-03 04:21:26] which: no apptainer in ((null))
[2026-05-03 04:21:26] apptainer is not installed, using version from CVMFS
[2026-05-03 04:21:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 04:21:27] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot24/slots/5/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut18.grid.cesnet.cz
[2026-05-03 04:21:27] apptainer works
[2026-05-03 04:21:27] Set ATHENA_PROC_NUMBER=12
[2026-05-03 04:21:27] Set ATHENA_CORE_NUMBER=12
[2026-05-03 04:21:27] Starting ATLAS job with PandaID=7122780975
[2026-05-03 04:21:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot24/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-03 05:00:49]  *** The last 200 lines of the pilot log: ***
[2026-05-03 05:00:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/2d/log.49645815._026445.job.log.tgz.1
[2026-05-03 05:00:49]  workdir=None
[2026-05-03 05:00:49] ]
[2026-05-03 05:00:49] 2026-05-03 03:00:00,780 | INFO     | transferring file log.49645815._026445.job.log.tgz.1 from /var/lib/boinc/var/slot24/slots/5/PanDA_Pilot-7122780975/log.49645815._026445.job.log.tgz.1 to /var/lib/b
[2026-05-03 05:00:49] 2026-05-03 03:00:00,781 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot24/slots/5/PanDA_Pilot-7122780975/log.49645815._026445.job.log.tgz.1 /var/lib/boinc/var/slot24/slots/5/lo
[2026-05-03 05:00:49] 2026-05-03 03:00:00,798 | INFO     | adding to output.list: log.49645815._026445.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/9f/2d/log.49645815._026445.job.log.tg
[2026-05-03 05:00:49] 2026-05-03 03:00:00,798 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-03 05:00:49] 2026-05-03 03:00:00,798 | INFO     | summary of transferred files:
[2026-05-03 05:00:49] 2026-05-03 03:00:00,798 | INFO     |  -- lfn=log.49645815._026445.job.log.tgz.1, status_code=0, status=transferred
[2026-05-03 05:00:49] 2026-05-03 03:00:00,798 | INFO     | stage-out finished correctly
[2026-05-03 05:00:49] 2026-05-03 03:00:02,255 | WARNING  | process 2193088 can no longer be monitored (due to stat problems) - aborting
[2026-05-03 05:00:49] 2026-05-03 03:00:02,255 | INFO     | using path: /var/lib/boinc/var/slot24/slots/5/PanDA_Pilot-7122780975/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 05:00:49] 2026-05-03 03:00:02,256 | INFO     | using path: /var/lib/boinc/var/slot24/slots/5/PanDA_Pilot-7122780975/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 05:00:49] 2026-05-03 03:00:02,256 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-05-03 05:00:49] 2026-05-03 03:00:02,256 | WARNING  | maxPSS not found in memory monitor output
[2026-05-03 05:00:49] 2026-05-03 03:00:02,256 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3720388 B
[2026-05-03 05:00:49] 2026-05-03 03:00:02,256 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15608 B
[2026-05-03 05:00:49] 2026-05-03 03:00:02,256 | INFO     | executing command: df -mP /var/lib/boinc/var/slot24/slots/5
[2026-05-03 05:00:49] 2026-05-03 03:00:02,274 | INFO     | sufficient remaining disk space (268915703808 B)
[2026-05-03 05:00:49] 2026-05-03 03:00:02,274 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-05-03 05:00:49] 2026-05-03 03:00:02,275 | INFO     | size of work directory /var/lib/boinc/var/slot24/slots/5/PanDA_Pilot-7122780975: 4003460 B (within 5033164800 B limit)
[2026-05-03 05:00:49] 2026-05-03 03:00:02,275 | INFO     | pfn file=/var/lib/boinc/var/slot24/slots/5/PanDA_Pilot-7122780975/HITS.49645815._026445.pool.root.1 does not exist (skip from workdir size calculation)
[2026-05-03 05:00:49] 2026-05-03 03:00:02,275 | INFO     | total size of present files: 0 B (workdir size: 4003460 B)
[2026-05-03 05:00:49] 2026-05-03 03:00:02,276 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot24/slots/5/PanDA_Pilot-7122780975/HITS.49645815._026445.pool.root.1 since it does not exist
[2026-05-03 05:00:49] 2026-05-03 03:00:02,573 | INFO     | number of running child processes to parent process 2193088: 1
[2026-05-03 05:00:49] 2026-05-03 03:00:02,573 | INFO     | maximum number of monitored processes: 6
[2026-05-03 05:00:49] 2026-05-03 03:00:03,631 | INFO     | PID=2187225 has CPU usage=10.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-05-03 05:00:49] 2026-05-03 03:00:03,632 | INFO     | .. there are 18 such processes running
[2026-05-03 05:00:49] 2026-05-03 03:00:03,834 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-03 05:00:49] 2026-05-03 03:00:05,076 | INFO     | monitor loop #174: job 0:7122780975 is in state 'finished'
[2026-05-03 05:00:49] 2026-05-03 03:00:05,076 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-03 05:00:49] 2026-05-03 03:00:06,236 | INFO     | job 7122780975 has state=finished
[2026-05-03 05:00:49] 2026-05-03 03:00:06,236 | INFO     | preparing for final server update for job 7122780975 in state='finished'
[2026-05-03 05:00:49] 2026-05-03 03:00:06,236 | INFO     | reading metadata from: /var/lib/boinc/var/slot24/slots/5/PanDA_Pilot-7122780975/jobReport.json
[2026-05-03 05:00:49] 2026-05-03 03:00:06,238 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot24/slots/5/workernode_map.json
[2026-05-03 05:00:49] 2026-05-03 03:00:06,238 | INFO     | this job has now completed (state=finished)
[2026-05-03 05:00:49] 2026-05-03 03:00:06,238 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-03 05:00:49] 2026-05-03 03:00:06,238 | INFO     | log transfer has been attempted: DONE
[2026-05-03 05:00:49] 2026-05-03 03:00:06,238 | INFO     | job 7122780975 has finished - writing final server update
[2026-05-03 05:00:49] 2026-05-03 03:00:06,239 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_4034224/.job.ad'
[2026-05-03 05:00:49] 2026-05-03 03:00:06,239 | INFO     | total number of processed events: 400 (read)
[2026-05-03 05:00:49] 2026-05-03 03:00:06,256 | INFO     | using path: /var/lib/boinc/var/slot24/slots/5/PanDA_Pilot-7122780975/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 05:00:49] 2026-05-03 03:00:06,256 | INFO     | extracted standard info from prmon json
[2026-05-03 05:00:49] 2026-05-03 03:00:06,256 | INFO     | extracted standard memory fields from prmon json
[2026-05-03 05:00:49] 2026-05-03 03:00:06,257 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-03 05:00:49] 2026-05-03 03:00:06,257 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-03 05:00:49] 2026-05-03 03:00:06,257 | INFO     | fitting pss+swap vs Time
[2026-05-03 05:00:49] 2026-05-03 03:00:06,257 | INFO     | sum of square deviations: 9228080.0
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | sum of deviations: 106385036.99999999
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | mean x (centered): 0.0
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | mean y: 2711642.5161290322
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | intersect: 2711642.5161290322
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | chi2: 5.011940301745046e-05
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | current memory leak: 11.53 B/s (using 31 data points, chi2=0.00)
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | could have reported an average CPU frequency of 3524 MHz (5 samples)
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | ..............................
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | . Timing measurements:
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | . get job = 0 s
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | . initial setup = 4 s
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | . payload setup = 6 s
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | . stage-in = 0 s
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | . payload execution = 2280 s
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | . stage-out = 0 s
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | . log creation = 0 s
[2026-05-03 05:00:49] 2026-05-03 03:00:06,258 | INFO     | ..............................
[2026-05-03 05:00:49] 2026-05-03 03:00:06,309 | INFO     | 
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | job summary report
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | --------------------------------------------------
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | PanDA job id: 7122780975
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | task id: 49645815
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | errors: (none)
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | pilot state: finished 
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | transexitcode: 0
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | exeerrorcode: 0
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | exeerrordiag: 
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | exitcode: 0
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | exitmsg: OK
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | cpuconsumptiontime: 23546 s
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | nevents: 400
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | neventsw: 0
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | pid: 2193088
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | pgrp: 2193088
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | corecount: 12
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | event service: False
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | sizes: {0: 2275532, 1: 2277190, 11: 2277190, 2290: 2302364, 2291: 2311384, 2294: 2311468, 2296: 2311822}
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | --------------------------------------------------
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | 
[2026-05-03 05:00:49] 2026-05-03 03:00:06,310 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot24/slots/5
[2026-05-03 05:00:49] 2026-05-03 03:00:06,328 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | job 7122780975 has completed (purged errors)
[2026-05-03 05:00:49] 2026-05-03 03:00:06,329 | INFO     | overall cleanup function is called
[2026-05-03 05:00:49] 2026-05-03 03:00:07,337 | INFO     | --- collectZombieJob: --- 10, [2193088]
[2026-05-03 05:00:49] 2026-05-03 03:00:07,337 | INFO     | zombie collector waiting for pid 2193088
[2026-05-03 05:00:49] 2026-05-03 03:00:07,337 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-03 05:00:49] 2026-05-03 03:00:07,337 | INFO     | collected zombie processes
[2026-05-03 05:00:49] 2026-05-03 03:00:07,337 | INFO     | will attempt to kill all subprocesses of pid=2193088
[2026-05-03 05:00:49] 2026-05-03 03:00:07,638 | INFO     | process IDs to be killed: [2193088] (in reverse order)
[2026-05-03 05:00:49] 2026-05-03 03:00:07,788 | WARNING  | found no corresponding commands to process id(s)
[2026-05-03 05:00:49] 2026-05-03 03:00:07,789 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-03 05:00:49] 2026-05-03 03:00:07,812 | INFO     | did not find any defunct processes belonging to 2193088
[2026-05-03 05:00:49] 2026-05-03 03:00:07,836 | INFO     | did not find any defunct processes belonging to 2193088
[2026-05-03 05:00:49] 2026-05-03 03:00:07,836 | INFO     | Ready for new job
[2026-05-03 05:00:49] 2026-05-03 03:00:07,837 | INFO     | ***************************************
[2026-05-03 05:00:49] 2026-05-03 03:00:07,837 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-03 05:00:49] 2026-05-03 03:00:07,837 | INFO     | ***************************************
[2026-05-03 05:00:49] 2026-05-03 03:00:07,837 | INFO     | 
[2026-05-03 05:00:49] 2026-05-03 03:00:07,843 | INFO     | architecture information:
[2026-05-03 05:00:49] 2026-05-03 03:00:07,843 | INFO     | executing command: cat /etc/os-release
[2026-05-03 05:00:49] 2026-05-03 03:00:07,856 | INFO     | cat /etc/os-release:
[2026-05-03 05:00:49] NAME="CentOS Linux"
[2026-05-03 05:00:49] VERSION="7 (Core)"
[2026-05-03 05:00:49] ID="centos"
[2026-05-03 05:00:49] ID_LIKE="rhel fedora"
[2026-05-03 05:00:49] VERSION_ID="7"
[2026-05-03 05:00:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-03 05:00:49] ANSI_COLOR="0;31"
[2026-05-03 05:00:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-03 05:00:49] HOME_URL="https://www.centos.org/"
[2026-05-03 05:00:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-03 05:00:49] 
[2026-05-03 05:00:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-03 05:00:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-03 05:00:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-03 05:00:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-03 05:00:49] 
[2026-05-03 05:00:49] 2026-05-03 03:00:07,857 | INFO     | ***************************************
[2026-05-03 05:00:49] 2026-05-03 03:00:08,360 | INFO     | executing command: df -mP /var/lib/boinc/var/slot24/slots/5
[2026-05-03 05:00:49] 2026-05-03 03:00:08,372 | INFO     | sufficient remaining disk space (268908363776 B)
[2026-05-03 05:00:49] 2026-05-03 03:00:08,372 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-03 05:00:49] 2026-05-03 03:00:08,372 | INFO     | current server update state: UPDATING_FINAL
[2026-05-03 05:00:49] 2026-05-03 03:00:08,372 | INFO     | update_server=False
[2026-05-03 05:00:49] 2026-05-03 03:00:08,372 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-03 05:00:49] 2026-05-03 03:00:08,584 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-03 05:00:49] 2026-05-03 03:00:08,584 | INFO     | aborting loop
[2026-05-03 05:00:49] 2026-05-03 03:00:08,847 | INFO     | all payload control threads have been joined
[2026-05-03 05:00:49] 2026-05-03 03:00:08,848 | INFO     | all job control threads have been joined
[2026-05-03 05:00:49] 2026-05-03 03:00:08,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-03 05:00:49] 2026-05-03 03:00:09,049 | INFO     | all data control threads have been joined
[2026-05-03 05:00:49] 2026-05-03 03:00:09,377 | INFO     | [job] retrieve thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:09,590 | INFO     | [job] job monitor thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:09,852 | INFO     | [payload] control thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:09,853 | INFO     | [job] control thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:09,884 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-03 05:00:49] 2026-05-03 03:00:09,887 | INFO     | [job] validate thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:10,043 | INFO     | [payload] validate_pre thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:10,055 | INFO     | [data] control thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:10,160 | INFO     | [job] create_data_payload thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:10,262 | INFO     | [payload] failed_post thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:10,292 | INFO     | [payload] execute_payloads thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:10,368 | INFO     | [data] copytool_in thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:10,866 | INFO     | [data] copytool_out thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:10,935 | INFO     | [payload] validate_post thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:11,320 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-03 05:00:49] 2026-05-03 03:00:12,325 | INFO     | [job] queue monitor thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:13,890 | INFO     | [data] queue_monitor thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:19,023 | INFO     | job.realtimelogging is not enabled
[2026-05-03 05:00:49] 2026-05-03 03:00:20,028 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-03 05:00:49] 2026-05-03 03:00:38,151 | INFO     | PID=2187225 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-03 05:00:49] 2026-05-03 03:00:38,151 | INFO     | .. there are 17 such processes running
[2026-05-03 05:00:49] 2026-05-03 03:00:38,152 | INFO     | found 0 job(s) in 20 queues
[2026-05-03 05:00:49] 2026-05-03 03:00:38,152 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-03 05:00:49] 2026-05-03 03:00:38,152 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-03 05:00:49] 2026-05-03 03:00:42,751 | INFO     | [monitor] cgroup control has ended
[2026-05-03 05:00:49] 2026-05-03 03:00:43,919 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22905430001472)>', '<ExcThread(monitor, started 22905108784896)>']
[2026-05-03 05:00:49] 2026-05-03 03:00:44,180 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-03 05:00:49] 2026-05-03 03:00:44,183 | INFO     | [monitor] control thread has ended
[2026-05-03 05:00:49] 2026-05-03 03:00:48,944 | INFO     | all workflow threads have been joined
[2026-05-03 05:00:49] 2026-05-03 03:00:48,944 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-03 05:00:49] 2026-05-03 03:00:48,944 | INFO     | traces error code: 0
[2026-05-03 05:00:49] 2026-05-03 03:00:48,944 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-03 05:00:49] 2026-05-03 03:00:49,122 [wrapper] ==== pilot stdout END ====
[2026-05-03 05:00:49] 2026-05-03 03:00:49,124 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-03 05:00:49] 2026-05-03 03:00:49,127 [wrapper] pilotpid: 2187225
[2026-05-03 05:00:49] 2026-05-03 03:00:49,129 [wrapper] Pilot exit status: 0
[2026-05-03 05:00:49] 2026-05-03 03:00:49,137 [wrapper] pandaids: 7122780975
[2026-05-03 05:00:49] 2026-05-03 03:00:49,238 [wrapper] cleanup supervisor_pilot 2413546 2187226
[2026-05-03 05:00:49] 2026-05-03 03:00:49,240 [wrapper] Test setup, not cleaning
[2026-05-03 05:00:49] 2026-05-03 03:00:49,242 [wrapper] apfmon messages muted
[2026-05-03 05:00:49] 2026-05-03 03:00:49,245 [wrapper] ==== wrapper stdout END ====
[2026-05-03 05:00:49] 2026-05-03 03:00:49,247 [wrapper] ==== wrapper stderr END ====
[2026-05-03 05:00:49]  *** Error codes and diagnostics ***
[2026-05-03 05:00:49]     "exeErrorCode": 0,
[2026-05-03 05:00:49]     "pilotErrorCode": 0,
[2026-05-03 05:00:49]  *** Listing of results directory ***
[2026-05-03 05:00:49] total 413312
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc    683926 May  1 23:37 pilot3.tar.gz
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc      5631 May  1 23:39 queuedata.json
[2026-05-03 05:00:49] -rwx------. 1 boinc boinc     36322 May  1 23:39 runpilot2-wrapper.sh
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc       100 May  3 04:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-03 05:00:49] -rwxr-xr-x. 1 boinc boinc      7986 May  3 04:21 run_atlas
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc       105 May  3 04:21 job.xml
[2026-05-03 05:00:49] -rw-r--r--. 2 boinc boinc 222446225 May  3 04:21 EVNT.48629115._000566.pool.root.1
[2026-05-03 05:00:49] -rw-r--r--. 2 boinc boinc     15667 May  3 04:21 start_atlas.sh
[2026-05-03 05:00:49] drwxrwx--x. 2 boinc boinc      4096 May  3 04:21 shared
[2026-05-03 05:00:49] -rw-r--r--. 2 boinc boinc    697442 May  3 04:21 input.tar.gz
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc      6627 May  3 04:21 init_data.xml
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc         0 May  3 04:21 boinc_lockfile
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc      2627 May  3 04:21 pandaJob.out
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc   1002964 May  3 04:21 agis_schedconf.cvmfs.json
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc   1508687 May  3 04:21 agis_ddmendpoints.agis.ALL.json
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc       444 May  3 04:21 workernode_map.json
[2026-05-03 05:00:49] drwx------. 5 boinc boinc      4096 May  3 04:21 pilot3
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc 195466147 May  3 04:59 HITS.49645815._026445.pool.root.1
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc       487 May  3 04:59 boinc_task_state.xml
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc      1026 May  3 04:59 memory_monitor_summary.json
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc    326530 May  3 05:00 log.49645815._026445.job.log.tgz.1
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc      6369 May  3 05:00 heartbeat_new.json
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc      6260 May  3 05:00 heartbeat.json
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc      8192 May  3 05:00 boinc_mmap_file
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc        27 May  3 05:00 wrapper_checkpoint.txt
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc        95 May  3 05:00 pilot_heartbeat.json
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc      4905 May  3 05:00 pilotlog.txt
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc    262815 May  3 05:00 log.49645815._026445.job.log.1
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc       357 May  3 05:00 output.list
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc       410 May  3 05:00 runtime_log
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc    604160 May  3 05:00 result.tar.gz
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc      8829 May  3 05:00 runtime_log.err
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc       660 May  3 05:00 1d999b690da2.diag
[2026-05-03 05:00:49] -rw-r--r--. 1 boinc boinc     22552 May  3 05:00 stderr.txt
[2026-05-03 05:00:49] HITS file was successfully produced:
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc 195466147 May  3 04:59 shared/HITS.pool.root.1
[2026-05-03 05:00:49]  *** Contents of shared directory: ***
[2026-05-03 05:00:49] total 409424
[2026-05-03 05:00:49] -rw-r--r--. 2 boinc boinc 222446225 May  3 04:21 ATLAS.root_0
[2026-05-03 05:00:49] -rw-r--r--. 2 boinc boinc     15667 May  3 04:21 start_atlas.sh
[2026-05-03 05:00:49] -rw-r--r--. 2 boinc boinc    697442 May  3 04:21 input.tar.gz
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc 195466147 May  3 04:59 HITS.pool.root.1
[2026-05-03 05:00:49] -rw-------. 1 boinc boinc    604160 May  3 05:00 result.tar.gz
05:00:50 (2177197): run_atlas exited; CPU time 23599.984679
05:00:50 (2177197): called boinc_finish(0)

</stderr_txt>
]]>

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