Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:42:35 (482809): wrapper (7.7.26015): starting
03:42:35 (482809): wrapper: running run_atlas (--nthreads 4)
[2026-05-03 03:42:35] Arguments: --nthreads 4
[2026-05-03 03:42:35] Threads: 4
[2026-05-03 03:42:35] Checking for CVMFS
[2026-05-03 03:42:35] No cvmfs_config command found, will try listing directly
[2026-05-03 03:42:35] CVMFS is ok
[2026-05-03 03:42:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 03:42:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 03:42:35] Further information can be found at the LHC@home message board.
[2026-05-03 03:42:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 03:42:35] Checking for apptainer binary...
[2026-05-03 03:42:35] which: no apptainer in ((null))
[2026-05-03 03:42:35] apptainer is not installed, using version from CVMFS
[2026-05-03 03:42:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 03:42:36] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot28/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2026-05-03 03:42:36] apptainer works
[2026-05-03 03:42:36] Set ATHENA_PROC_NUMBER=4
[2026-05-03 03:42:36] Set ATHENA_CORE_NUMBER=4
[2026-05-03 03:42:36] Starting ATLAS job with PandaID=7123279229
[2026-05-03 03:42:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot28/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-03 07:18:52]  *** The last 200 lines of the pilot log: ***
[2026-05-03 07:18:52] 2026-05-03 05:17:40,375 | INFO     | reading metadata from: /var/lib/boinc/var/slot28/slots/2/PanDA_Pilot-7123279229/jobReport.json
[2026-05-03 07:18:52] 2026-05-03 05:17:40,378 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot28/slots/2/workernode_map.json
[2026-05-03 07:18:52] 2026-05-03 05:17:40,378 | INFO     | this job has now completed (state=finished)
[2026-05-03 07:18:52] 2026-05-03 05:17:40,379 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-03 07:18:52] 2026-05-03 05:17:40,379 | INFO     | log transfer has been attempted: DONE
[2026-05-03 07:18:52] 2026-05-03 05:17:40,379 | INFO     | job 7123279229 has finished - writing final server update
[2026-05-03 07:18:52] 2026-05-03 05:17:40,410 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1339057/.job.ad'
[2026-05-03 07:18:52] 2026-05-03 05:17:40,410 | INFO     | total number of processed events: 400 (read)
[2026-05-03 07:18:52] 2026-05-03 05:17:40,433 | INFO     | using path: /var/lib/boinc/var/slot28/slots/2/PanDA_Pilot-7123279229/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 07:18:52] 2026-05-03 05:17:40,434 | INFO     | extracted standard info from prmon json
[2026-05-03 07:18:52] 2026-05-03 05:17:40,434 | INFO     | extracted standard memory fields from prmon json
[2026-05-03 07:18:52] 2026-05-03 05:17:40,434 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-03 07:18:52] 2026-05-03 05:17:40,435 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-03 07:18:52] 2026-05-03 05:17:40,439 | INFO     | fitting pss+swap vs Time
[2026-05-03 07:18:52] 2026-05-03 05:17:40,439 | INFO     | sum of square deviations: 2871616632.5
[2026-05-03 07:18:52] 2026-05-03 05:17:40,441 | INFO     | sum of deviations: 16163413542.500004
[2026-05-03 07:18:52] 2026-05-03 05:17:40,441 | INFO     | mean x (centered): 0.0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,441 | INFO     | mean y: 2339704.3095238097
[2026-05-03 07:18:52] 2026-05-03 05:17:40,441 | INFO     | intersect: 2339704.3095238097
[2026-05-03 07:18:52] 2026-05-03 05:17:40,441 | INFO     | chi2: 1.4414351132348107
[2026-05-03 07:18:52] 2026-05-03 05:17:40,442 | INFO     | sum of square deviations: 2671343110.0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,443 | INFO     | sum of deviations: 15673563565.0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,443 | INFO     | mean x (centered): 0.0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,443 | INFO     | mean y: 2339331.312195122
[2026-05-03 07:18:52] 2026-05-03 05:17:40,444 | INFO     | intersect: 2339331.312195122
[2026-05-03 07:18:52] 2026-05-03 05:17:40,444 | INFO     | chi2: 1.4422299816070032
[2026-05-03 07:18:52] 2026-05-03 05:17:40,444 | INFO     | current chi2=1.4422299816070032 (change=-0.055144235414714374 %)
[2026-05-03 07:18:52] 2026-05-03 05:17:40,444 | INFO     | right removable region: 204
[2026-05-03 07:18:52] 2026-05-03 05:17:40,444 | INFO     | sum of square deviations: 2671343110.0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,446 | INFO     | sum of deviations: -11572936897.0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,446 | INFO     | mean x (centered): 0.0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,446 | INFO     | mean y: 2360564.7317073173
[2026-05-03 07:18:52] 2026-05-03 05:17:40,446 | INFO     | intersect: 2360564.7317073173
[2026-05-03 07:18:52] 2026-05-03 05:17:40,447 | INFO     | chi2: 0.06201847750186249
[2026-05-03 07:18:52] 2026-05-03 05:17:40,447 | INFO     | current chi2=0.06201847750186249 (change=95.69744923427854 %)
[2026-05-03 07:18:52] 2026-05-03 05:17:40,447 | INFO     | sum of square deviations: 2480604650.0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,448 | INFO     | sum of deviations: -9911964389.500002
[2026-05-03 07:18:52] 2026-05-03 05:17:40,449 | INFO     | mean x (centered): 0.0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,449 | INFO     | mean y: 2359216.715
[2026-05-03 07:18:52] 2026-05-03 05:17:40,449 | INFO     | intersect: 2359216.715
[2026-05-03 07:18:52] 2026-05-03 05:17:40,449 | INFO     | chi2: 0.05818131018060866
[2026-05-03 07:18:52] 2026-05-03 05:17:40,449 | INFO     | current chi2=0.05818131018060866 (change=6.187135634115811 %)
[2026-05-03 07:18:52] 2026-05-03 05:17:40,449 | INFO     | left removable region: 10
[2026-05-03 07:18:52] 2026-05-03 05:17:40,450 | INFO     | sum of square deviations: 2263977332.5
[2026-05-03 07:18:52] 2026-05-03 05:17:40,451 | INFO     | sum of deviations: -9753859343.499998
[2026-05-03 07:18:52] 2026-05-03 05:17:40,451 | INFO     | mean x (centered): 0.0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,451 | INFO     | mean y: 2359350.4793814435
[2026-05-03 07:18:52] 2026-05-03 05:17:40,451 | INFO     | intersect: 2359350.4793814435
[2026-05-03 07:18:52] 2026-05-03 05:17:40,452 | INFO     | chi2: 0.057690422016539164
[2026-05-03 07:18:52] 2026-05-03 05:17:40,452 | INFO     | current memory leak: -4.31 B/s (using 194 data points, chi2=0.06)
[2026-05-03 07:18:52] 2026-05-03 05:17:40,452 | INFO     | could have reported an average CPU frequency of 2485 MHz (11 samples)
[2026-05-03 07:18:52] 2026-05-03 05:17:40,453 | INFO     | ..............................
[2026-05-03 07:18:52] 2026-05-03 05:17:40,453 | INFO     | . Timing measurements:
[2026-05-03 07:18:52] 2026-05-03 05:17:40,453 | INFO     | . get job = 0 s
[2026-05-03 07:18:52] 2026-05-03 05:17:40,453 | INFO     | . initial setup = 10 s
[2026-05-03 07:18:52] 2026-05-03 05:17:40,453 | INFO     | . payload setup = 28 s
[2026-05-03 07:18:52] 2026-05-03 05:17:40,453 | INFO     | . stage-in = 0 s
[2026-05-03 07:18:52] 2026-05-03 05:17:40,453 | INFO     | . payload execution = 12815 s
[2026-05-03 07:18:52] 2026-05-03 05:17:40,453 | INFO     | . stage-out = 1 s
[2026-05-03 07:18:52] 2026-05-03 05:17:40,453 | INFO     | . log creation = 0 s
[2026-05-03 07:18:52] 2026-05-03 05:17:40,454 | INFO     | ..............................
[2026-05-03 07:18:52] 2026-05-03 05:17:40,551 | INFO     | 
[2026-05-03 07:18:52] 2026-05-03 05:17:40,551 | INFO     | job summary report
[2026-05-03 07:18:52] 2026-05-03 05:17:40,551 | INFO     | --------------------------------------------------
[2026-05-03 07:18:52] 2026-05-03 05:17:40,551 | INFO     | PanDA job id: 7123279229
[2026-05-03 07:18:52] 2026-05-03 05:17:40,551 | INFO     | task id: 49263200
[2026-05-03 07:18:52] 2026-05-03 05:17:40,552 | INFO     | errors: (none)
[2026-05-03 07:18:52] 2026-05-03 05:17:40,552 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-03 07:18:52] 2026-05-03 05:17:40,552 | INFO     | pilot state: finished 
[2026-05-03 07:18:52] 2026-05-03 05:17:40,552 | INFO     | transexitcode: 0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,552 | INFO     | exeerrorcode: 0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,552 | INFO     | exeerrordiag: 
[2026-05-03 07:18:52] 2026-05-03 05:17:40,552 | INFO     | exitcode: 0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,552 | INFO     | exitmsg: OK
[2026-05-03 07:18:52] 2026-05-03 05:17:40,552 | INFO     | cpuconsumptiontime: 47953 s
[2026-05-03 07:18:52] 2026-05-03 05:17:40,552 | INFO     | nevents: 400
[2026-05-03 07:18:52] 2026-05-03 05:17:40,552 | INFO     | neventsw: 0
[2026-05-03 07:18:52] 2026-05-03 05:17:40,552 | INFO     | pid: 492250
[2026-05-03 07:18:52] 2026-05-03 05:17:40,553 | INFO     | pgrp: 492250
[2026-05-03 07:18:52] 2026-05-03 05:17:40,553 | INFO     | corecount: 4
[2026-05-03 07:18:52] 2026-05-03 05:17:40,553 | INFO     | event service: False
[2026-05-03 07:18:52] 2026-05-03 05:17:40,553 | INFO     | sizes: {0: 2275368, 1: 2277197, 11: 2277197, 12848: 2307175, 12850: 2316251, 12852: 2316389}
[2026-05-03 07:18:52] 2026-05-03 05:17:40,553 | INFO     | --------------------------------------------------
[2026-05-03 07:18:52] 2026-05-03 05:17:40,553 | INFO     | 
[2026-05-03 07:18:52] 2026-05-03 05:17:40,553 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot28/slots/2
[2026-05-03 07:18:52] 2026-05-03 05:17:40,571 | INFO     | number of running child processes to parent process 492250: 1
[2026-05-03 07:18:52] 2026-05-03 05:17:40,572 | INFO     | maximum number of monitored processes: 6
[2026-05-03 07:18:52] 2026-05-03 05:17:40,572 | INFO     | aborting job monitoring since job object (job id=7123279229) has expired
[2026-05-03 07:18:52] 2026-05-03 05:17:40,575 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,575 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,575 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,575 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,575 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,576 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,576 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,576 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,576 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,576 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,576 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,576 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,576 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,576 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,576 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,577 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-03 07:18:52] 2026-05-03 05:17:40,577 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,577 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-03 07:18:52] 2026-05-03 05:17:40,577 | INFO     | job 7123279229 has completed (purged errors)
[2026-05-03 07:18:52] 2026-05-03 05:17:40,577 | INFO     | overall cleanup function is called
[2026-05-03 07:18:52] 2026-05-03 05:17:41,585 | INFO     | --- collectZombieJob: --- 10, [492250]
[2026-05-03 07:18:52] 2026-05-03 05:17:41,585 | INFO     | zombie collector waiting for pid 492250
[2026-05-03 07:18:52] 2026-05-03 05:17:41,585 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-03 07:18:52] 2026-05-03 05:17:41,585 | INFO     | collected zombie processes
[2026-05-03 07:18:52] 2026-05-03 05:17:41,586 | INFO     | will attempt to kill all subprocesses of pid=492250
[2026-05-03 07:18:52] 2026-05-03 05:17:41,919 | INFO     | process IDs to be killed: [492250] (in reverse order)
[2026-05-03 07:18:52] 2026-05-03 05:17:42,051 | WARNING  | found no corresponding commands to process id(s)
[2026-05-03 07:18:52] 2026-05-03 05:17:42,051 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-03 07:18:52] 2026-05-03 05:17:42,064 | INFO     | did not find any defunct processes belonging to 492250
[2026-05-03 07:18:52] 2026-05-03 05:17:42,078 | INFO     | did not find any defunct processes belonging to 492250
[2026-05-03 07:18:52] 2026-05-03 05:17:42,078 | INFO     | Ready for new job
[2026-05-03 07:18:52] 2026-05-03 05:17:42,080 | INFO     | ***************************************
[2026-05-03 07:18:52] 2026-05-03 05:17:42,080 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-03 07:18:52] 2026-05-03 05:17:42,080 | INFO     | ***************************************
[2026-05-03 07:18:52] 2026-05-03 05:17:42,081 | INFO     | 
[2026-05-03 07:18:52] 2026-05-03 05:17:42,085 | INFO     | architecture information:
[2026-05-03 07:18:52] 2026-05-03 05:17:42,085 | INFO     | executing command: cat /etc/os-release
[2026-05-03 07:18:52] 2026-05-03 05:17:42,102 | INFO     | cat /etc/os-release:
[2026-05-03 07:18:52] NAME="CentOS Linux"
[2026-05-03 07:18:52] VERSION="7 (Core)"
[2026-05-03 07:18:52] ID="centos"
[2026-05-03 07:18:52] ID_LIKE="rhel fedora"
[2026-05-03 07:18:52] VERSION_ID="7"
[2026-05-03 07:18:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-03 07:18:52] ANSI_COLOR="0;31"
[2026-05-03 07:18:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-03 07:18:52] HOME_URL="https://www.centos.org/"
[2026-05-03 07:18:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-03 07:18:52] 
[2026-05-03 07:18:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-03 07:18:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-03 07:18:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-03 07:18:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-03 07:18:52] 
[2026-05-03 07:18:52] 2026-05-03 05:17:42,102 | INFO     | ***************************************
[2026-05-03 07:18:52] 2026-05-03 05:17:42,603 | INFO     | executing command: df -mP /var/lib/boinc/var/slot28/slots/2
[2026-05-03 07:18:52] 2026-05-03 05:17:42,620 | INFO     | sufficient remaining disk space (51064602624 B)
[2026-05-03 07:18:52] 2026-05-03 05:17:42,621 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-03 07:18:52] 2026-05-03 05:17:42,621 | INFO     | current server update state: UPDATING_FINAL
[2026-05-03 07:18:52] 2026-05-03 05:17:42,621 | INFO     | update_server=False
[2026-05-03 07:18:52] 2026-05-03 05:17:42,621 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-03 07:18:52] 2026-05-03 05:17:42,939 | INFO     | all data control threads have been joined
[2026-05-03 07:18:52] 2026-05-03 05:17:43,075 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-03 07:18:52] 2026-05-03 05:17:43,075 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-03 07:18:52] 2026-05-03 05:17:43,075 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-03 07:18:52] 2026-05-03 05:17:43,075 | INFO     | will abort loop
[2026-05-03 07:18:52] 2026-05-03 05:17:43,468 | INFO     | all payload control threads have been joined
[2026-05-03 07:18:52] 2026-05-03 05:17:43,593 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-03 07:18:52] 2026-05-03 05:17:43,626 | INFO     | [job] retrieve thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:43,698 | INFO     | [job] validate thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:43,829 | INFO     | [payload] validate_post thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:43,942 | INFO     | [data] control thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:44,056 | INFO     | all job control threads have been joined
[2026-05-03 07:18:52] 2026-05-03 05:17:44,081 | INFO     | [job] job monitor thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:44,173 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:44,188 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-03 07:18:52] 2026-05-03 05:17:44,431 | INFO     | [payload] validate_pre thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:44,473 | INFO     | [payload] control thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:44,659 | INFO     | [job] create_data_payload thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:44,675 | INFO     | [data] copytool_in thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:44,828 | INFO     | [payload] execute_payloads thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:45,061 | INFO     | [job] control thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:45,162 | INFO     | [payload] failed_post thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:45,561 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-03 07:18:52] 2026-05-03 05:17:45,599 | INFO     | [data] copytool_out thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:46,566 | INFO     | [job] queue monitor thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:17:48,193 | INFO     | [data] queue_monitor thread has finished
[2026-05-03 07:18:52] 2026-05-03 05:18:12,730 | INFO     | PID=487319 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-03 07:18:52] 2026-05-03 05:18:12,730 | INFO     | .. there are 11 such processes running
[2026-05-03 07:18:52] 2026-05-03 05:18:12,730 | INFO     | found 0 job(s) in 20 queues
[2026-05-03 07:18:52] 2026-05-03 05:18:12,730 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-03 07:18:52] 2026-05-03 05:18:12,731 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-03 07:18:52] 2026-05-03 05:18:38,016 | INFO     | [monitor] cgroup control has ended
[2026-05-03 07:18:52] 2026-05-03 05:18:38,929 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22673869039424)>', '<ExcThread(monitor, started 22673622296320)>']
[2026-05-03 07:18:52] 2026-05-03 05:18:39,854 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-03 07:18:52] 2026-05-03 05:18:39,855 | INFO     | [monitor] control thread has ended
[2026-05-03 07:18:52] 2026-05-03 05:18:43,954 | INFO     | all workflow threads have been joined
[2026-05-03 07:18:52] 2026-05-03 05:18:43,955 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-03 07:18:52] 2026-05-03 05:18:43,955 | INFO     | traces error code: 0
[2026-05-03 07:18:52] 2026-05-03 05:18:43,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-03 07:18:52] 2026-05-03 05:18:44,100 [wrapper] ==== pilot stdout END ====
[2026-05-03 07:18:52] 2026-05-03 05:18:44,103 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-03 07:18:52] 2026-05-03 05:18:44,106 [wrapper] pilotpid: 487319
[2026-05-03 07:18:52] 2026-05-03 05:18:44,108 [wrapper] Pilot exit status: 0
[2026-05-03 07:18:52] 2026-05-03 05:18:44,118 [wrapper] pandaids: 7123279229
[2026-05-03 07:18:52] 2026-05-03 05:18:44,205 [wrapper] cleanup supervisor_pilot  733765 487320
[2026-05-03 07:18:52] 2026-05-03 05:18:44,208 [wrapper] Test setup, not cleaning
[2026-05-03 07:18:52] 2026-05-03 05:18:44,211 [wrapper] apfmon messages muted
[2026-05-03 07:18:52] 2026-05-03 05:18:44,213 [wrapper] ==== wrapper stdout END ====
[2026-05-03 07:18:52] 2026-05-03 05:18:44,216 [wrapper] ==== wrapper stderr END ====
[2026-05-03 07:18:52]  *** Error codes and diagnostics ***
[2026-05-03 07:18:52]     "exeErrorCode": 0,
[2026-05-03 07:18:52]     "pilotErrorCode": 0,
[2026-05-03 07:18:52]  *** Listing of results directory ***
[2026-05-03 07:18:52] total 421096
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc      5631 May  1 23:37 queuedata.json
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc    683926 May  1 23:37 pilot3.tar.gz
[2026-05-03 07:18:52] -rwx------. 1 boinc boinc     36322 May  1 23:39 runpilot2-wrapper.sh
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc       100 May  3 03:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-03 07:18:52] -rwxr-xr-x. 1 boinc boinc      7986 May  3 03:42 run_atlas
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc       105 May  3 03:42 job.xml
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc      6483 May  3 03:42 init_data.xml
[2026-05-03 07:18:52] -rw-r--r--. 2 boinc boinc 222835311 May  3 03:42 EVNT.49263198._001755.pool.root.1
[2026-05-03 07:18:52] -rw-r--r--. 2 boinc boinc     15667 May  3 03:42 start_atlas.sh
[2026-05-03 07:18:52] drwxrwx--x. 2 boinc boinc      4096 May  3 03:42 shared
[2026-05-03 07:18:52] -rw-r--r--. 2 boinc boinc    697431 May  3 03:42 input.tar.gz
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc         0 May  3 03:42 boinc_lockfile
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc      2576 May  3 03:42 pandaJob.out
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc   1002964 May  3 03:43 agis_schedconf.cvmfs.json
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc       452 May  3 03:43 workernode_map.json
[2026-05-03 07:18:52] drwx------. 5 boinc boinc      4096 May  3 03:43 pilot3
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc 201208887 May  3 07:16 HITS.49263200._084577.pool.root.1
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc        95 May  3 07:17 pilot_heartbeat.json
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc       487 May  3 07:17 boinc_task_state.xml
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc      1033 May  3 07:17 memory_monitor_summary.json
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc   1508687 May  3 07:17 agis_ddmendpoints.agis.ALL.json
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc    313845 May  3 07:17 log.49263200._084577.job.log.tgz.1
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc      6430 May  3 07:17 heartbeat_new.json
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc      6321 May  3 07:17 heartbeat.json
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc      5017 May  3 07:18 pilotlog.txt
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc   1193804 May  3 07:18 log.49263200._084577.job.log.1
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc       357 May  3 07:18 output.list
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc       410 May  3 07:18 runtime_log
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc   1525760 May  3 07:18 result.tar.gz
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc      8828 May  3 07:18 runtime_log.err
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc       665 May  3 07:18 1d81b52d93ea.diag
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc        27 May  3 07:18 wrapper_checkpoint.txt
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc      8192 May  3 07:18 boinc_mmap_file
[2026-05-03 07:18:52] -rw-r--r--. 1 boinc boinc     21036 May  3 07:18 stderr.txt
[2026-05-03 07:18:52] HITS file was successfully produced:
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc 201208887 May  3 07:16 shared/HITS.pool.root.1
[2026-05-03 07:18:52]  *** Contents of shared directory: ***
[2026-05-03 07:18:52] total 416312
[2026-05-03 07:18:52] -rw-r--r--. 2 boinc boinc 222835311 May  3 03:42 ATLAS.root_0
[2026-05-03 07:18:52] -rw-r--r--. 2 boinc boinc     15667 May  3 03:42 start_atlas.sh
[2026-05-03 07:18:52] -rw-r--r--. 2 boinc boinc    697431 May  3 03:42 input.tar.gz
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc 201208887 May  3 07:16 HITS.pool.root.1
[2026-05-03 07:18:52] -rw-------. 1 boinc boinc   1525760 May  3 07:18 result.tar.gz
07:18:54 (482809): run_atlas exited; CPU time 48480.237760
07:18:54 (482809): called boinc_finish(0)

</stderr_txt>
]]>

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