Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:28:27 (1950044): wrapper (7.7.26015): starting
23:28:27 (1950044): wrapper: running run_atlas (--nthreads 12)
[2026-05-03 23:28:27] Arguments: --nthreads 12
[2026-05-03 23:28:27] Threads: 12
[2026-05-03 23:28:27] Checking for CVMFS
[2026-05-03 23:28:27] No cvmfs_config command found, will try listing directly
[2026-05-03 23:28:27] CVMFS is ok
[2026-05-03 23:28:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 23:28:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 23:28:27] Further information can be found at the LHC@home message board.
[2026-05-03 23:28:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 23:28:27] Checking for apptainer binary...
[2026-05-03 23:28:27] which: no apptainer in ((null))
[2026-05-03 23:28:27] apptainer is not installed, using version from CVMFS
[2026-05-03 23:28:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 23:28:27] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/27/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2026-05-03 23:28:27] apptainer works
[2026-05-03 23:28:27] Set ATHENA_PROC_NUMBER=12
[2026-05-03 23:28:27] Set ATHENA_CORE_NUMBER=12
[2026-05-03 23:28:27] Starting ATLAS job with PandaID=7122845884
[2026-05-03 23:28:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot60/slots/27 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-03 23:50:41]  *** The last 200 lines of the pilot log: ***
[2026-05-03 23:50:41]  filetype=log
[2026-05-03 23:50:41]  guid=040571e1-c37d-4e8e-90b3-4657a2803da9
[2026-05-03 23:50:41]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-03 23:50:41]  is_altstaged=None
[2026-05-03 23:50:41]  is_tar=False
[2026-05-03 23:50:41]  lfn=log.49263200._084130.job.log.tgz.1
[2026-05-03 23:50:41]  mtime=0
[2026-05-03 23:50:41]  protocol_id=None
[2026-05-03 23:50:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-03 23:50:41]  replicas=None
[2026-05-03 23:50:41]  scope=mc23_13p6TeV
[2026-05-03 23:50:41]  status=None
[2026-05-03 23:50:41]  status_code=0
[2026-05-03 23:50:41]  storage_token=
[2026-05-03 23:50:41]  surl=/var/lib/boinc/var/slot60/slots/27/PanDA_Pilot-7122845884/log.49263200._084130.job.log.tgz.1
[2026-05-03 23:50:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/ba/log.49263200._084130.job.log.tgz.1
[2026-05-03 23:50:41]  workdir=None
[2026-05-03 23:50:41] ]
[2026-05-03 23:50:41] 2026-05-03 21:49:55,227 | INFO     | transferring file log.49263200._084130.job.log.tgz.1 from /var/lib/boinc/var/slot60/slots/27/PanDA_Pilot-7122845884/log.49263200._084130.job.log.tgz.1 to /var/lib/
[2026-05-03 23:50:41] 2026-05-03 21:49:55,227 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot60/slots/27/PanDA_Pilot-7122845884/log.49263200._084130.job.log.tgz.1 /var/lib/boinc/var/slot60/slots/27/
[2026-05-03 23:50:41] 2026-05-03 21:49:55,236 | INFO     | adding to output.list: log.49263200._084130.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/79/ba/log.49263200._084130.job.log.tg
[2026-05-03 23:50:41] 2026-05-03 21:49:55,237 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-03 23:50:41] 2026-05-03 21:49:55,237 | INFO     | summary of transferred files:
[2026-05-03 23:50:41] 2026-05-03 21:49:55,237 | INFO     |  -- lfn=log.49263200._084130.job.log.tgz.1, status_code=0, status=transferred
[2026-05-03 23:50:41] 2026-05-03 21:49:55,237 | INFO     | stage-out finished correctly
[2026-05-03 23:50:41] 2026-05-03 21:49:55,889 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-03 23:50:41] 2026-05-03 21:49:55,917 | INFO     | job 7122845884 has state=finished
[2026-05-03 23:50:41] 2026-05-03 21:49:55,918 | INFO     | preparing for final server update for job 7122845884 in state='finished'
[2026-05-03 23:50:41] 2026-05-03 21:49:55,918 | INFO     | reading metadata from: /var/lib/boinc/var/slot60/slots/27/PanDA_Pilot-7122845884/jobReport.json
[2026-05-03 23:50:41] 2026-05-03 21:49:55,919 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot60/slots/27/workernode_map.json
[2026-05-03 23:50:41] 2026-05-03 21:49:55,920 | INFO     | this job has now completed (state=finished)
[2026-05-03 23:50:41] 2026-05-03 21:49:55,920 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-03 23:50:41] 2026-05-03 21:49:55,920 | INFO     | log transfer has been attempted: DONE
[2026-05-03 23:50:41] 2026-05-03 21:49:55,920 | INFO     | job 7122845884 has finished - writing final server update
[2026-05-03 23:50:41] 2026-05-03 21:49:55,920 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1321124/.job.ad'
[2026-05-03 23:50:41] 2026-05-03 21:49:55,920 | INFO     | total number of processed events: 400 (read)
[2026-05-03 23:50:41] 2026-05-03 21:49:55,936 | INFO     | using path: /var/lib/boinc/var/slot60/slots/27/PanDA_Pilot-7122845884/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 23:50:41] 2026-05-03 21:49:55,936 | INFO     | extracted standard info from prmon json
[2026-05-03 23:50:41] 2026-05-03 21:49:55,936 | INFO     | extracted standard memory fields from prmon json
[2026-05-03 23:50:41] 2026-05-03 21:49:55,937 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-03 23:50:41] 2026-05-03 21:49:55,937 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-03 23:50:41] 2026-05-03 21:49:55,937 | INFO     | fitting pss+swap vs Time
[2026-05-03 23:50:41] 2026-05-03 21:49:55,937 | INFO     | sum of square deviations: 846527.5
[2026-05-03 23:50:41] 2026-05-03 21:49:55,937 | INFO     | sum of deviations: 41307400.5
[2026-05-03 23:50:41] 2026-05-03 21:49:55,937 | INFO     | mean x (centered): 0.0
[2026-05-03 23:50:41] 2026-05-03 21:49:55,937 | INFO     | mean y: 2749405.3571428573
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | intersect: 2749405.3571428573
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | chi2: 0.00030966182452998035
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | current memory leak: 48.80 B/s (using 14 data points, chi2=0.00)
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | could have reported an average CPU frequency of 3643 MHz (4 samples)
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | ..............................
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | . Timing measurements:
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | . get job = 0 s
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | . initial setup = 3 s
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | . payload setup = 5 s
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | . stage-in = 0 s
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | . payload execution = 1259 s
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | . stage-out = 0 s
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | . log creation = 0 s
[2026-05-03 23:50:41] 2026-05-03 21:49:55,938 | INFO     | ..............................
[2026-05-03 23:50:41] 2026-05-03 21:49:55,985 | INFO     | 
[2026-05-03 23:50:41] 2026-05-03 21:49:55,985 | INFO     | job summary report
[2026-05-03 23:50:41] 2026-05-03 21:49:55,985 | INFO     | --------------------------------------------------
[2026-05-03 23:50:41] 2026-05-03 21:49:55,985 | INFO     | PanDA job id: 7122845884
[2026-05-03 23:50:41] 2026-05-03 21:49:55,985 | INFO     | task id: 49263200
[2026-05-03 23:50:41] 2026-05-03 21:49:55,985 | INFO     | errors: (none)
[2026-05-03 23:50:41] 2026-05-03 21:49:55,985 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-03 23:50:41] 2026-05-03 21:49:55,985 | INFO     | pilot state: finished 
[2026-05-03 23:50:41] 2026-05-03 21:49:55,985 | INFO     | transexitcode: 0
[2026-05-03 23:50:41] 2026-05-03 21:49:55,985 | INFO     | exeerrorcode: 0
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | exeerrordiag: 
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | exitcode: 0
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | exitmsg: OK
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | cpuconsumptiontime: 13220 s
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | nevents: 400
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | neventsw: 0
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | pid: 1960361
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | pgrp: 1960361
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | corecount: 12
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | event service: False
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | sizes: {0: 2277170, 11: 2277170, 1268: 2301807, 1269: 2310829, 1270: 2311079}
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | --------------------------------------------------
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | 
[2026-05-03 23:50:41] 2026-05-03 21:49:55,986 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot60/slots/27
[2026-05-03 23:50:41] 2026-05-03 21:49:56,001 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,001 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | job 7122845884 has completed (purged errors)
[2026-05-03 23:50:41] 2026-05-03 21:49:56,002 | INFO     | overall cleanup function is called
[2026-05-03 23:50:41] 2026-05-03 21:49:56,366 | WARNING  | process 1960361 can no longer be monitored (due to stat problems) - aborting
[2026-05-03 23:50:41] 2026-05-03 21:49:56,592 | INFO     | using path: /var/lib/boinc/var/slot60/slots/27/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 23:50:41] 2026-05-03 21:49:56,771 | INFO     | number of running child processes to parent process 1960361: 1
[2026-05-03 23:50:41] 2026-05-03 21:49:56,771 | INFO     | maximum number of monitored processes: 6
[2026-05-03 23:50:41] 2026-05-03 21:49:56,771 | INFO     | aborting job monitoring since job object (job id=7122845884) has expired
[2026-05-03 23:50:41] 2026-05-03 21:49:57,009 | INFO     | --- collectZombieJob: --- 10, [1960361]
[2026-05-03 23:50:41] 2026-05-03 21:49:57,009 | INFO     | zombie collector waiting for pid 1960361
[2026-05-03 23:50:41] 2026-05-03 21:49:57,009 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-03 23:50:41] 2026-05-03 21:49:57,009 | INFO     | collected zombie processes
[2026-05-03 23:50:41] 2026-05-03 21:49:57,009 | INFO     | will attempt to kill all subprocesses of pid=1960361
[2026-05-03 23:50:41] 2026-05-03 21:49:57,205 | INFO     | process IDs to be killed: [1960361] (in reverse order)
[2026-05-03 23:50:41] 2026-05-03 21:49:57,315 | WARNING  | found no corresponding commands to process id(s)
[2026-05-03 23:50:41] 2026-05-03 21:49:57,316 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-03 23:50:41] 2026-05-03 21:49:57,335 | INFO     | did not find any defunct processes belonging to 1960361
[2026-05-03 23:50:41] 2026-05-03 21:49:57,354 | INFO     | did not find any defunct processes belonging to 1960361
[2026-05-03 23:50:41] 2026-05-03 21:49:57,354 | INFO     | Ready for new job
[2026-05-03 23:50:41] 2026-05-03 21:49:57,355 | INFO     | ***************************************
[2026-05-03 23:50:41] 2026-05-03 21:49:57,355 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-03 23:50:41] 2026-05-03 21:49:57,355 | INFO     | ***************************************
[2026-05-03 23:50:41] 2026-05-03 21:49:57,355 | INFO     | 
[2026-05-03 23:50:41] 2026-05-03 21:49:57,360 | INFO     | architecture information:
[2026-05-03 23:50:41] 2026-05-03 21:49:57,361 | INFO     | executing command: cat /etc/os-release
[2026-05-03 23:50:41] 2026-05-03 21:49:57,373 | INFO     | cat /etc/os-release:
[2026-05-03 23:50:41] NAME="CentOS Linux"
[2026-05-03 23:50:41] VERSION="7 (Core)"
[2026-05-03 23:50:41] ID="centos"
[2026-05-03 23:50:41] ID_LIKE="rhel fedora"
[2026-05-03 23:50:41] VERSION_ID="7"
[2026-05-03 23:50:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-03 23:50:41] ANSI_COLOR="0;31"
[2026-05-03 23:50:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-03 23:50:41] HOME_URL="https://www.centos.org/"
[2026-05-03 23:50:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-03 23:50:41] 
[2026-05-03 23:50:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-03 23:50:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-03 23:50:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-03 23:50:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-03 23:50:41] 
[2026-05-03 23:50:41] 2026-05-03 21:49:57,373 | INFO     | ***************************************
[2026-05-03 23:50:41] 2026-05-03 21:49:57,876 | INFO     | executing command: df -mP /var/lib/boinc/var/slot60/slots/27
[2026-05-03 23:50:41] 2026-05-03 21:49:57,892 | INFO     | sufficient remaining disk space (275298385920 B)
[2026-05-03 23:50:41] 2026-05-03 21:49:57,892 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-03 23:50:41] 2026-05-03 21:49:57,892 | INFO     | current server update state: UPDATING_FINAL
[2026-05-03 23:50:41] 2026-05-03 21:49:57,892 | INFO     | update_server=False
[2026-05-03 23:50:41] 2026-05-03 21:49:57,892 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-03 23:50:41] 2026-05-03 21:49:57,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-03 23:50:41] 2026-05-03 21:49:57,893 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-03 23:50:41] 2026-05-03 21:49:57,893 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-03 23:50:41] 2026-05-03 21:49:57,894 | INFO     | aborting loop
[2026-05-03 23:50:41] 2026-05-03 21:49:58,011 | INFO     | all data control threads have been joined
[2026-05-03 23:50:41] 2026-05-03 21:49:58,285 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-03 23:50:41] 2026-05-03 21:49:58,313 | INFO     | all job control threads have been joined
[2026-05-03 23:50:41] 2026-05-03 21:49:58,898 | INFO     | [job] retrieve thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:49:58,899 | INFO     | [job] queue monitor thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:49:58,899 | INFO     | [job] job monitor thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:49:59,016 | INFO     | [data] control thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:49:59,143 | INFO     | all payload control threads have been joined
[2026-05-03 23:50:41] 2026-05-03 21:49:59,318 | INFO     | [job] control thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:49:59,410 | INFO     | [job] validate thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:49:59,411 | INFO     | [payload] execute_payloads thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:49:59,452 | INFO     | [job] create_data_payload thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:49:59,500 | INFO     | [payload] validate_pre thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:49:59,611 | INFO     | [payload] failed_post thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:49:59,647 | INFO     | [data] copytool_in thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:50:00,140 | INFO     | [payload] validate_post thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:50:00,149 | INFO     | [payload] control thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:50:00,291 | INFO     | [data] copytool_out thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:50:01,899 | INFO     | [data] queue_monitor thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:50:08,124 | INFO     | job.realtimelogging is not enabled
[2026-05-03 23:50:41] 2026-05-03 21:50:09,129 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-03 23:50:41] 2026-05-03 21:50:28,248 | INFO     | PID=1954586 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-03 23:50:41] 2026-05-03 21:50:28,248 | INFO     | .. there are 7 such processes running
[2026-05-03 23:50:41] 2026-05-03 21:50:28,250 | INFO     | found 0 job(s) in 20 queues
[2026-05-03 23:50:41] 2026-05-03 21:50:28,250 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-03 23:50:41] 2026-05-03 21:50:28,250 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-03 23:50:41] 2026-05-03 21:50:36,063 | INFO     | [monitor] cgroup control has ended
[2026-05-03 23:50:41] 2026-05-03 21:50:36,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22630879897408)>', '<ExcThread(monitor, started 22630579029760)>']
[2026-05-03 23:50:41] 2026-05-03 21:50:37,295 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-03 23:50:41] 2026-05-03 21:50:37,296 | INFO     | [monitor] control thread has ended
[2026-05-03 23:50:41] 2026-05-03 21:50:41,539 | INFO     | all workflow threads have been joined
[2026-05-03 23:50:41] 2026-05-03 21:50:41,539 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-03 23:50:41] 2026-05-03 21:50:41,539 | INFO     | traces error code: 0
[2026-05-03 23:50:41] 2026-05-03 21:50:41,539 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-03 23:50:41] 2026-05-03 21:50:41,704 [wrapper] ==== pilot stdout END ====
[2026-05-03 23:50:41] 2026-05-03 21:50:41,707 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-03 23:50:41] 2026-05-03 21:50:41,710 [wrapper] pilotpid: 1954586
[2026-05-03 23:50:41] 2026-05-03 21:50:41,712 [wrapper] Pilot exit status: 0
[2026-05-03 23:50:41] 2026-05-03 21:50:41,720 [wrapper] pandaids: 7122845884
[2026-05-03 23:50:41] 2026-05-03 21:50:41,807 [wrapper] cleanup supervisor_pilot 2066736 1954587
[2026-05-03 23:50:41] 2026-05-03 21:50:41,810 [wrapper] Test setup, not cleaning
[2026-05-03 23:50:41] 2026-05-03 21:50:41,811 [wrapper] apfmon messages muted
[2026-05-03 23:50:41] 2026-05-03 21:50:41,813 [wrapper] ==== wrapper stdout END ====
[2026-05-03 23:50:41] 2026-05-03 21:50:41,815 [wrapper] ==== wrapper stderr END ====
[2026-05-03 23:50:41]  *** Error codes and diagnostics ***
[2026-05-03 23:50:41]     "exeErrorCode": 0,
[2026-05-03 23:50:41]     "pilotErrorCode": 0,
[2026-05-03 23:50:41]  *** Listing of results directory ***
[2026-05-03 23:50:41] total 420480
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc      5631 May  1 23:37 queuedata.json
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc    683926 May  1 23:37 pilot3.tar.gz
[2026-05-03 23:50:41] -rwx------. 1 boinc boinc     36322 May  1 23:38 runpilot2-wrapper.sh
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc       100 May  3 23:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-03 23:50:41] -rwxr-xr-x. 1 boinc boinc      7986 May  3 23:28 run_atlas
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc       105 May  3 23:28 job.xml
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc      6629 May  3 23:28 init_data.xml
[2026-05-03 23:50:41] -rw-r--r--. 2 boinc boinc 226941952 May  3 23:28 EVNT.49263198._001723.pool.root.1
[2026-05-03 23:50:41] -rw-r--r--. 2 boinc boinc     15667 May  3 23:28 start_atlas.sh
[2026-05-03 23:50:41] drwxrwx--x. 2 boinc boinc      4096 May  3 23:28 shared
[2026-05-03 23:50:41] -rw-r--r--. 2 boinc boinc    697432 May  3 23:28 input.tar.gz
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc         0 May  3 23:28 boinc_lockfile
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc      2576 May  3 23:28 pandaJob.out
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc   1003003 May  3 23:28 agis_schedconf.cvmfs.json
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc   1508687 May  3 23:28 agis_ddmendpoints.agis.ALL.json
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc       444 May  3 23:28 workernode_map.json
[2026-05-03 23:50:41] drwx------. 5 boinc boinc      4096 May  3 23:28 pilot3
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc 198524208 May  3 23:49 HITS.49263200._084130.pool.root.1
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc       487 May  3 23:49 boinc_task_state.xml
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc      1028 May  3 23:49 memory_monitor_summary.json
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc    318662 May  3 23:49 log.49263200._084130.job.log.tgz.1
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc      6380 May  3 23:49 heartbeat_new.json
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc      6271 May  3 23:49 heartbeat.json
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc        95 May  3 23:50 pilot_heartbeat.json
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc        27 May  3 23:50 wrapper_checkpoint.txt
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc      8192 May  3 23:50 boinc_mmap_file
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc      4905 May  3 23:50 pilotlog.txt
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc    169975 May  3 23:50 log.49263200._084130.job.log.1
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc       357 May  3 23:50 output.list
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc       410 May  3 23:50 runtime_log
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc    501760 May  3 23:50 result.tar.gz
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc      8846 May  3 23:50 runtime_log.err
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc       655 May  3 23:50 1d6ab1fcebee.diag
[2026-05-03 23:50:41] -rw-r--r--. 1 boinc boinc     21092 May  3 23:50 stderr.txt
[2026-05-03 23:50:41] HITS file was successfully produced:
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc 198524208 May  3 23:49 shared/HITS.pool.root.1
[2026-05-03 23:50:41]  *** Contents of shared directory: ***
[2026-05-03 23:50:41] total 416692
[2026-05-03 23:50:41] -rw-r--r--. 2 boinc boinc 226941952 May  3 23:28 ATLAS.root_0
[2026-05-03 23:50:41] -rw-r--r--. 2 boinc boinc     15667 May  3 23:28 start_atlas.sh
[2026-05-03 23:50:41] -rw-r--r--. 2 boinc boinc    697432 May  3 23:28 input.tar.gz
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc 198524208 May  3 23:49 HITS.pool.root.1
[2026-05-03 23:50:41] -rw-------. 1 boinc boinc    501760 May  3 23:50 result.tar.gz
23:50:43 (1950044): run_atlas exited; CPU time 13242.083114
23:50:43 (1950044): called boinc_finish(0)

</stderr_txt>
]]>

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