Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:06:31 (4145): wrapper (7.7.26015): starting
09:06:31 (4145): wrapper: running run_atlas (--nthreads 8)
[2026-05-02 09:06:31] Arguments: --nthreads 8
[2026-05-02 09:06:31] Threads: 8
[2026-05-02 09:06:31] Checking for CVMFS
[2026-05-02 09:06:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-02 09:06:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-02 09:06:35] Running cvmfs_config stat atlas.cern.ch
[2026-05-02 09:06:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-02 09:06:36] 2.11.2.0 21071 23882 102548 159122 1 53 23149776 25165824 96 130560 0 7898783 99.938 5416814 7893 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-02 09:06:36] CVMFS is ok
[2026-05-02 09:06:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 09:06:36] Checking for apptainer binary...
[2026-05-02 09:06:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-02 09:06:36] Running /usr/bin/apptainer --version
[2026-05-02 09:06:36] apptainer version 1.3.2-1.el7
[2026-05-02 09:06:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 09:07:00] cg-vwn360.simple-grid.lan
[2026-05-02 09:07:00] apptainer works
[2026-05-02 09:07:00] Set ATHENA_PROC_NUMBER=8
[2026-05-02 09:07:00] Set ATHENA_CORE_NUMBER=8
[2026-05-02 09:07:00] Starting ATLAS job with PandaID=7125349692
[2026-05-02 09:07:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 14:01:52]  *** The last 200 lines of the pilot log: ***
[2026-05-02 14:01:52] 2026-05-02 12:00:42,947 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-02 14:01:52] 2026-05-02 12:00:42,947 | INFO     | log transfer has been attempted: DONE
[2026-05-02 14:01:52] 2026-05-02 12:00:42,947 | INFO     | job 7125349692 has finished - writing final server update
[2026-05-02 14:01:52] 2026-05-02 12:00:42,947 | INFO     | total number of processed events: 400 (read)
[2026-05-02 14:01:52] 2026-05-02 12:00:42,949 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7125349692/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 14:01:52] 2026-05-02 12:00:42,950 | INFO     | extracted standard info from prmon json
[2026-05-02 14:01:52] 2026-05-02 12:00:42,950 | INFO     | extracted standard memory fields from prmon json
[2026-05-02 14:01:52] 2026-05-02 12:00:42,951 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-02 14:01:52] 2026-05-02 12:00:42,951 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-02 14:01:52] 2026-05-02 12:00:42,957 | INFO     | fitting pss+swap vs Time
[2026-05-02 14:01:52] 2026-05-02 12:00:42,958 | INFO     | sum of square deviations: 6662039329.5
[2026-05-02 14:01:52] 2026-05-02 12:00:42,960 | INFO     | sum of deviations: 102312492047.99998
[2026-05-02 14:01:52] 2026-05-02 12:00:42,961 | INFO     | mean x (centered): 0.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,961 | INFO     | mean y: 2482771.381294964
[2026-05-02 14:01:52] 2026-05-02 12:00:42,961 | INFO     | intersect: 2482771.381294964
[2026-05-02 14:01:52] 2026-05-02 12:00:42,961 | INFO     | chi2: 9.10836025414681
[2026-05-02 14:01:52] 2026-05-02 12:00:42,962 | INFO     | sum of square deviations: 6309000152.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,965 | INFO     | sum of deviations: 118992406224.00003
[2026-05-02 14:01:52] 2026-05-02 12:00:42,965 | INFO     | mean x (centered): 0.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,965 | INFO     | mean y: 2489860.1611721613
[2026-05-02 14:01:52] 2026-05-02 12:00:42,965 | INFO     | intersect: 2489860.1611721613
[2026-05-02 14:01:52] 2026-05-02 12:00:42,966 | INFO     | chi2: 8.415565118829686
[2026-05-02 14:01:52] 2026-05-02 12:00:42,966 | INFO     | current chi2=8.415565118829686 (change=7.606145518911714 %)
[2026-05-02 14:01:52] 2026-05-02 12:00:42,966 | INFO     | right removable region: 272
[2026-05-02 14:01:52] 2026-05-02 12:00:42,967 | INFO     | sum of square deviations: 6309000152.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,969 | INFO     | sum of deviations: 2672830594.9999847
[2026-05-02 14:01:52] 2026-05-02 12:00:42,970 | INFO     | mean x (centered): 0.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,970 | INFO     | mean y: 2525790.3003663
[2026-05-02 14:01:52] 2026-05-02 12:00:42,970 | INFO     | intersect: 2525790.3003663
[2026-05-02 14:01:52] 2026-05-02 12:00:42,970 | INFO     | chi2: 3.9528653106511076
[2026-05-02 14:01:52] 2026-05-02 12:00:42,971 | INFO     | current chi2=3.9528653106511076 (change=56.60179000000064 %)
[2026-05-02 14:01:52] 2026-05-02 12:00:42,971 | INFO     | sum of square deviations: 5968658887.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,974 | INFO     | sum of deviations: -72848053363.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,974 | INFO     | mean x (centered): 0.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,974 | INFO     | mean y: 2559590.686567164
[2026-05-02 14:01:52] 2026-05-02 12:00:42,974 | INFO     | intersect: 2559590.686567164
[2026-05-02 14:01:52] 2026-05-02 12:00:42,974 | INFO     | chi2: 1.1544382922305074
[2026-05-02 14:01:52] 2026-05-02 12:00:42,975 | INFO     | current chi2=1.1544382922305074 (change=70.79489935769274 %)
[2026-05-02 14:01:52] 2026-05-02 12:00:42,975 | INFO     | sum of square deviations: 5640782972.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,978 | INFO     | sum of deviations: -85600648093.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,978 | INFO     | mean x (centered): 0.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,978 | INFO     | mean y: 2565488.9239543728
[2026-05-02 14:01:52] 2026-05-02 12:00:42,978 | INFO     | intersect: 2565488.9239543728
[2026-05-02 14:01:52] 2026-05-02 12:00:42,979 | INFO     | chi2: 1.0134055997216271
[2026-05-02 14:01:52] 2026-05-02 12:00:42,979 | INFO     | current chi2=1.0134055997216271 (change=12.216563973842979 %)
[2026-05-02 14:01:52] 2026-05-02 12:00:42,979 | INFO     | left removable region: 15
[2026-05-02 14:01:52] 2026-05-02 12:00:42,979 | INFO     | sum of square deviations: 5263458688.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,982 | INFO     | sum of deviations: -66187302201.00003
[2026-05-02 14:01:52] 2026-05-02 12:00:42,982 | INFO     | mean x (centered): 0.0
[2026-05-02 14:01:52] 2026-05-02 12:00:42,982 | INFO     | mean y: 2574741.8365758755
[2026-05-02 14:01:52] 2026-05-02 12:00:42,982 | INFO     | intersect: 2574741.8365758755
[2026-05-02 14:01:52] 2026-05-02 12:00:42,983 | INFO     | chi2: 0.2244067539559197
[2026-05-02 14:01:52] 2026-05-02 12:00:42,983 | INFO     | current memory leak: -12.57 B/s (using 257 data points, chi2=0.22)
[2026-05-02 14:01:52] 2026-05-02 12:00:42,984 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-05-02 14:01:52] 2026-05-02 12:00:42,984 | INFO     | ..............................
[2026-05-02 14:01:52] 2026-05-02 12:00:42,984 | INFO     | . Timing measurements:
[2026-05-02 14:01:52] 2026-05-02 12:00:42,984 | INFO     | . get job = 0 s
[2026-05-02 14:01:52] 2026-05-02 12:00:42,984 | INFO     | . initial setup = 126 s
[2026-05-02 14:01:52] 2026-05-02 12:00:42,984 | INFO     | . payload setup = 183 s
[2026-05-02 14:01:52] 2026-05-02 12:00:42,984 | INFO     | . stage-in = 0 s
[2026-05-02 14:01:52] 2026-05-02 12:00:42,984 | INFO     | . payload execution = 17043 s
[2026-05-02 14:01:52] 2026-05-02 12:00:42,985 | INFO     | . stage-out = 3 s
[2026-05-02 14:01:52] 2026-05-02 12:00:42,985 | INFO     | . log creation = 1 s
[2026-05-02 14:01:52] 2026-05-02 12:00:42,985 | INFO     | ..............................
[2026-05-02 14:01:52] 2026-05-02 12:00:43,219 | INFO     | 
[2026-05-02 14:01:52] 2026-05-02 12:00:43,220 | INFO     | job summary report
[2026-05-02 14:01:52] 2026-05-02 12:00:43,220 | INFO     | --------------------------------------------------
[2026-05-02 14:01:52] 2026-05-02 12:00:43,220 | INFO     | PanDA job id: 7125349692
[2026-05-02 14:01:52] 2026-05-02 12:00:43,220 | INFO     | task id: 50016906
[2026-05-02 14:01:52] 2026-05-02 12:00:43,220 | INFO     | errors: (none)
[2026-05-02 14:01:52] 2026-05-02 12:00:43,220 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-02 14:01:52] 2026-05-02 12:00:43,220 | INFO     | pilot state: finished 
[2026-05-02 14:01:52] 2026-05-02 12:00:43,220 | INFO     | transexitcode: 0
[2026-05-02 14:01:52] 2026-05-02 12:00:43,221 | INFO     | exeerrorcode: 0
[2026-05-02 14:01:52] 2026-05-02 12:00:43,221 | INFO     | exeerrordiag: 
[2026-05-02 14:01:52] 2026-05-02 12:00:43,221 | INFO     | exitcode: 0
[2026-05-02 14:01:52] 2026-05-02 12:00:43,221 | INFO     | exitmsg: OK
[2026-05-02 14:01:52] 2026-05-02 12:00:43,221 | INFO     | cpuconsumptiontime: 64220 s
[2026-05-02 14:01:52] 2026-05-02 12:00:43,221 | INFO     | nevents: 400
[2026-05-02 14:01:52] 2026-05-02 12:00:43,221 | INFO     | neventsw: 0
[2026-05-02 14:01:52] 2026-05-02 12:00:43,221 | INFO     | pid: 12573
[2026-05-02 14:01:52] 2026-05-02 12:00:43,221 | INFO     | pgrp: 12573
[2026-05-02 14:01:52] 2026-05-02 12:00:43,222 | INFO     | corecount: 8
[2026-05-02 14:01:52] 2026-05-02 12:00:43,222 | INFO     | event service: False
[2026-05-02 14:01:52] 2026-05-02 12:00:43,222 | INFO     | sizes: {0: 2275214, 1: 2272662, 2: 2277127, 12: 2277127, 17231: 2309235, 17236: 2318233, 17237: 2318417, 17239: 2318611}
[2026-05-02 14:01:52] 2026-05-02 12:00:43,222 | INFO     | --------------------------------------------------
[2026-05-02 14:01:52] 2026-05-02 12:00:43,222 | INFO     | 
[2026-05-02 14:01:52] 2026-05-02 12:00:43,222 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-05-02 14:01:52] 2026-05-02 12:00:43,648 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,648 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,648 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,648 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,649 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,649 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,649 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,649 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,649 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,649 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,649 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,649 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,649 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,650 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,650 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,650 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,650 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,650 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-02 14:01:52] 2026-05-02 12:00:43,650 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,650 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-02 14:01:52] 2026-05-02 12:00:43,650 | INFO     | job 7125349692 has completed (purged errors)
[2026-05-02 14:01:52] 2026-05-02 12:00:43,650 | INFO     | overall cleanup function is called
[2026-05-02 14:01:52] 2026-05-02 12:00:44,659 | INFO     | --- collectZombieJob: --- 10, [12573]
[2026-05-02 14:01:52] 2026-05-02 12:00:44,660 | INFO     | zombie collector waiting for pid 12573
[2026-05-02 14:01:52] 2026-05-02 12:00:44,660 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 14:01:52] 2026-05-02 12:00:44,660 | INFO     | collected zombie processes
[2026-05-02 14:01:52] 2026-05-02 12:00:44,660 | INFO     | will attempt to kill all subprocesses of pid=12573
[2026-05-02 14:01:52] 2026-05-02 12:00:44,715 | INFO     | process IDs to be killed: [12573] (in reverse order)
[2026-05-02 14:01:52] 2026-05-02 12:00:45,382 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 14:01:52] 2026-05-02 12:00:45,382 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 14:01:52] 2026-05-02 12:00:45,384 | INFO     | did not find any defunct processes belonging to 12573
[2026-05-02 14:01:52] 2026-05-02 12:00:45,385 | INFO     | did not find any defunct processes belonging to 12573
[2026-05-02 14:01:52] 2026-05-02 12:00:45,386 | INFO     | Ready for new job
[2026-05-02 14:01:52] 2026-05-02 12:00:45,388 | INFO     | ***************************************
[2026-05-02 14:01:52] 2026-05-02 12:00:45,388 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 14:01:52] 2026-05-02 12:00:45,388 | INFO     | ***************************************
[2026-05-02 14:01:52] 2026-05-02 12:00:45,388 | INFO     | 
[2026-05-02 14:01:52] 2026-05-02 12:00:45,389 | INFO     | pilot is running in a VM
[2026-05-02 14:01:52] 2026-05-02 12:00:45,389 | INFO     | architecture information:
[2026-05-02 14:01:52] 2026-05-02 12:00:45,389 | INFO     | executing command: cat /etc/os-release
[2026-05-02 14:01:52] 2026-05-02 12:00:45,685 | INFO     | cat /etc/os-release:
[2026-05-02 14:01:52] NAME="CentOS Linux"
[2026-05-02 14:01:52] VERSION="7 (Core)"
[2026-05-02 14:01:52] ID="centos"
[2026-05-02 14:01:52] ID_LIKE="rhel fedora"
[2026-05-02 14:01:52] VERSION_ID="7"
[2026-05-02 14:01:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 14:01:52] ANSI_COLOR="0;31"
[2026-05-02 14:01:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 14:01:52] HOME_URL="https://www.centos.org/"
[2026-05-02 14:01:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 14:01:52] 
[2026-05-02 14:01:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 14:01:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 14:01:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 14:01:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 14:01:52] 
[2026-05-02 14:01:52] 2026-05-02 12:00:45,685 | INFO     | ***************************************
[2026-05-02 14:01:52] 2026-05-02 12:00:46,189 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-05-02 14:01:52] 2026-05-02 12:00:46,686 | INFO     | sufficient remaining disk space (495758344192 B)
[2026-05-02 14:01:52] 2026-05-02 12:00:46,686 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 14:01:52] 2026-05-02 12:00:46,687 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 14:01:52] 2026-05-02 12:00:46,687 | INFO     | update_server=False
[2026-05-02 14:01:52] 2026-05-02 12:00:46,687 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 14:01:52] 2026-05-02 12:00:46,770 | INFO     | all job control threads have been joined
[2026-05-02 14:01:52] 2026-05-02 12:00:47,318 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 14:01:52] 2026-05-02 12:00:47,319 | INFO     | aborting loop
[2026-05-02 14:01:52] 2026-05-02 12:00:47,517 | INFO     | all data control threads have been joined
[2026-05-02 14:01:52] 2026-05-02 12:00:47,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 14:01:52] 2026-05-02 12:00:47,652 | INFO     | all payload control threads have been joined
[2026-05-02 14:01:52] 2026-05-02 12:00:47,693 | INFO     | [job] retrieve thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:47,715 | INFO     | [payload] failed_post thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:47,726 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 14:01:52] 2026-05-02 12:00:47,757 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:47,776 | INFO     | [job] control thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:47,854 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:47,855 | INFO     | [job] validate thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:48,115 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 14:01:52] 2026-05-02 12:00:48,324 | INFO     | [job] job monitor thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:48,523 | INFO     | [data] control thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:48,605 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:48,658 | INFO     | [payload] control thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:48,830 | INFO     | [payload] validate_post thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:49,093 | INFO     | [data] copytool_in thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:49,121 | INFO     | [job] queue monitor thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:49,733 | INFO     | [data] copytool_out thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:51,584 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:00:57,058 | INFO     | job.realtimelogging is not enabled
[2026-05-02 14:01:52] 2026-05-02 12:00:58,064 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 14:01:52] 2026-05-02 12:01:15,846 | INFO     | PID=8123 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-05-02 14:01:52] 2026-05-02 12:01:15,847 | INFO     | .. there are 2 such processes running
[2026-05-02 14:01:52] 2026-05-02 12:01:15,855 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 14:01:52] 2026-05-02 12:01:15,856 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 14:01:52] 2026-05-02 12:01:15,856 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 14:01:52] 2026-05-02 12:01:41,123 | INFO     | [monitor] cgroup control has ended
[2026-05-02 14:01:52] 2026-05-02 12:01:42,846 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139987734660928)>', '<ExcThread(monitor, started 139987446118144)>']
[2026-05-02 14:01:52] 2026-05-02 12:01:43,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 14:01:52] 2026-05-02 12:01:43,017 | INFO     | [monitor] control thread has ended
[2026-05-02 14:01:52] 2026-05-02 12:01:47,872 | INFO     | all workflow threads have been joined
[2026-05-02 14:01:52] 2026-05-02 12:01:47,873 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 14:01:52] 2026-05-02 12:01:47,873 | INFO     | traces error code: 0
[2026-05-02 14:01:52] 2026-05-02 12:01:47,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 14:01:52] 2026-05-02 12:01:48,372 [wrapper] ==== pilot stdout END ====
[2026-05-02 14:01:52] 2026-05-02 12:01:48,481 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 14:01:52] 2026-05-02 12:01:48,602 [wrapper] pilotpid: 8123
[2026-05-02 14:01:52] 2026-05-02 12:01:48,698 [wrapper] Pilot exit status: 0
[2026-05-02 14:01:52] 2026-05-02 12:01:49,207 [wrapper] pandaids: 7125349692
[2026-05-02 14:01:52] 2026-05-02 12:01:50,322 [wrapper] cleanup supervisor_pilot 20098 8124
[2026-05-02 14:01:52] 2026-05-02 12:01:50,442 [wrapper] Test setup, not cleaning
[2026-05-02 14:01:52] 2026-05-02 12:01:50,533 [wrapper] apfmon messages muted
[2026-05-02 14:01:52] 2026-05-02 12:01:50,658 [wrapper] ==== wrapper stdout END ====
[2026-05-02 14:01:52] 2026-05-02 12:01:50,701 [wrapper] ==== wrapper stderr END ====
[2026-05-02 14:01:52]  *** Error codes and diagnostics ***
[2026-05-02 14:01:52]     "exeErrorCode": 0,
[2026-05-02 14:01:52]     "pilotErrorCode": 0,
[2026-05-02 14:01:52]  *** Listing of results directory ***
[2026-05-02 14:01:52] total 493936
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc    683926 May  1 22:25 pilot3.tar.gz
[2026-05-02 14:01:52] -rwx------. 1 boinc boinc     36322 May  1 22:29 runpilot2-wrapper.sh
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc      5631 May  1 22:30 queuedata.json
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc       100 May  2 09:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 14:01:52] -rwxr-xr-x. 1 boinc boinc      7986 May  2 09:06 run_atlas
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc       105 May  2 09:06 job.xml
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc      6306 May  2 09:06 init_data.xml
[2026-05-02 14:01:52] -rw-r--r--. 2 boinc boinc 318865384 May  2 09:06 EVNT.50016902._000046.pool.root.1
[2026-05-02 14:01:52] -rw-r--r--. 2 boinc boinc     15667 May  2 09:06 start_atlas.sh
[2026-05-02 14:01:52] drwxrwx--x. 2 boinc boinc        68 May  2 09:06 shared
[2026-05-02 14:01:52] -rw-r--r--. 2 boinc boinc    697412 May  2 09:06 input.tar.gz
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc         0 May  2 09:06 boinc_lockfile
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc      2561 May  2 09:07 pandaJob.out
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc       415 May  2 09:13 workernode_map.json
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc   1002976 May  2 09:13 agis_schedconf.cvmfs.json
[2026-05-02 14:01:52] drwx------. 5 boinc boinc      4096 May  2 09:13 pilot3
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc 178775584 May  2 13:59 HITS.50016906._001167.pool.root.1
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc       488 May  2 13:59 boinc_task_state.xml
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc      1012 May  2 14:00 memory_monitor_summary.json
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc   1508687 May  2 14:00 agis_ddmendpoints.agis.ALL.json
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc    419661 May  2 14:00 log.50016906._001167.job.log.tgz.1
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc      6335 May  2 14:00 heartbeat_new.json
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc      6226 May  2 14:00 heartbeat.json
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc        95 May  2 14:01 pilot_heartbeat.json
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc      8192 May  2 14:01 boinc_mmap_file
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc        28 May  2 14:01 wrapper_checkpoint.txt
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc      4954 May  2 14:01 pilotlog.txt
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc   1593895 May  2 14:01 log.50016906._001167.job.log.1
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc       357 May  2 14:01 output.list
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc       410 May  2 14:01 runtime_log
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc   2027520 May  2 14:01 result.tar.gz
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc      8439 May  2 14:01 runtime_log.err
[2026-05-02 14:01:52] -rw-------. 1 boinc boinc       656 May  2 14:01 0d2ec7cf0d5a.diag
[2026-05-02 14:01:52] -rw-r--r--. 1 boinc boinc     20624 May  2 14:01 stderr.txt
[2026-05-02 14:01:53] HITS file was successfully produced:
[2026-05-02 14:01:53] -rw-------. 1 boinc boinc 178775584 May  2 13:59 shared/HITS.pool.root.1
[2026-05-02 14:01:53]  *** Contents of shared directory: ***
[2026-05-02 14:01:53] total 488660
[2026-05-02 14:01:53] -rw-r--r--. 2 boinc boinc 318865384 May  2 09:06 ATLAS.root_0
[2026-05-02 14:01:53] -rw-r--r--. 2 boinc boinc     15667 May  2 09:06 start_atlas.sh
[2026-05-02 14:01:53] -rw-r--r--. 2 boinc boinc    697412 May  2 09:06 input.tar.gz
[2026-05-02 14:01:53] -rw-------. 1 boinc boinc 178775584 May  2 13:59 HITS.pool.root.1
[2026-05-02 14:01:53] -rw-------. 1 boinc boinc   2027520 May  2 14:01 result.tar.gz
14:01:54 (4145): run_atlas exited; CPU time 64385.733409
14:01:54 (4145): called boinc_finish(0)

</stderr_txt>
]]>

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