Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:00:55 (778771): wrapper (7.7.26015): starting
16:00:55 (778771): wrapper: running run_atlas (--nthreads 4)
[2026-05-03 16:00:55] Arguments: --nthreads 4
[2026-05-03 16:00:55] Threads: 4
[2026-05-03 16:00:55] Checking for CVMFS
[2026-05-03 16:00:55] No cvmfs_config command found, will try listing directly
[2026-05-03 16:00:55] CVMFS is ok
[2026-05-03 16:00:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-03 16:00:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-03 16:00:55] Further information can be found at the LHC@home message board.
[2026-05-03 16:00:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-03 16:00:55] Checking for apptainer binary...
[2026-05-03 16:00:55] which: no apptainer in ((null))
[2026-05-03 16:00:55] apptainer is not installed, using version from CVMFS
[2026-05-03 16:00:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-03 16:00:55] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2026-05-03 16:00:55] apptainer works
[2026-05-03 16:00:55] Set ATHENA_PROC_NUMBER=4
[2026-05-03 16:00:55] Set ATHENA_CORE_NUMBER=4
[2026-05-03 16:00:55] Starting ATLAS job with PandaID=7122772355
[2026-05-03 16:00:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-03 19:42:36]  *** The last 200 lines of the pilot log: ***
[2026-05-03 19:42:36] 2026-05-03 17:41:40,339 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-03 19:42:36] 2026-05-03 17:41:40,339 | INFO     | log transfer has been attempted: DONE
[2026-05-03 19:42:36] 2026-05-03 17:41:40,339 | INFO     | job 7122772355 has finished - writing final server update
[2026-05-03 19:42:36] 2026-05-03 17:41:40,340 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2298900/.job.ad'
[2026-05-03 19:42:36] 2026-05-03 17:41:40,340 | INFO     | total number of processed events: 400 (read)
[2026-05-03 19:42:36] 2026-05-03 17:41:40,352 | INFO     | using path: /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7122772355/memory_monitor_summary.json (trf name=prmon)
[2026-05-03 19:42:36] 2026-05-03 17:41:40,353 | INFO     | extracted standard info from prmon json
[2026-05-03 19:42:36] 2026-05-03 17:41:40,353 | INFO     | extracted standard memory fields from prmon json
[2026-05-03 19:42:36] 2026-05-03 17:41:40,354 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-03 19:42:36] 2026-05-03 17:41:40,354 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-03 19:42:36] 2026-05-03 17:41:40,358 | INFO     | fitting pss+swap vs Time
[2026-05-03 19:42:36] 2026-05-03 17:41:40,358 | INFO     | sum of square deviations: 3168461268.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,360 | INFO     | sum of deviations: 24672614429.000004
[2026-05-03 19:42:36] 2026-05-03 17:41:40,360 | INFO     | mean x (centered): 0.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,360 | INFO     | mean y: 2307464.267281106
[2026-05-03 19:42:36] 2026-05-03 17:41:40,360 | INFO     | intersect: 2307464.267281106
[2026-05-03 19:42:36] 2026-05-03 17:41:40,361 | INFO     | chi2: 2.163732744764248
[2026-05-03 19:42:36] 2026-05-03 17:41:40,361 | INFO     | sum of square deviations: 2954447953.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,362 | INFO     | sum of deviations: 37245538813.50001
[2026-05-03 19:42:36] 2026-05-03 17:41:40,362 | INFO     | mean x (centered): 0.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,363 | INFO     | mean y: 2316242.2405660376
[2026-05-03 19:42:36] 2026-05-03 17:41:40,363 | INFO     | intersect: 2316242.2405660376
[2026-05-03 19:42:36] 2026-05-03 17:41:40,363 | INFO     | chi2: 1.373643425459596
[2026-05-03 19:42:36] 2026-05-03 17:41:40,363 | INFO     | current chi2=1.373643425459596 (change=36.51510664690418 %)
[2026-05-03 19:42:36] 2026-05-03 17:41:40,364 | INFO     | sum of square deviations: 2750295288.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,365 | INFO     | sum of deviations: 35979053245.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,365 | INFO     | mean x (centered): 0.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,365 | INFO     | mean y: 2315296.0144927534
[2026-05-03 19:42:36] 2026-05-03 17:41:40,365 | INFO     | intersect: 2315296.0144927534
[2026-05-03 19:42:36] 2026-05-03 17:41:40,366 | INFO     | chi2: 1.3741801251096888
[2026-05-03 19:42:36] 2026-05-03 17:41:40,366 | INFO     | current chi2=1.3741801251096888 (change=-0.03907124950663761 %)
[2026-05-03 19:42:36] 2026-05-03 17:41:40,366 | INFO     | right removable region: 206
[2026-05-03 19:42:36] 2026-05-03 17:41:40,366 | INFO     | sum of square deviations: 2954447953.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,368 | INFO     | sum of deviations: -5186342518.5
[2026-05-03 19:42:36] 2026-05-03 17:41:40,368 | INFO     | mean x (centered): 0.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,368 | INFO     | mean y: 2328517.212264151
[2026-05-03 19:42:36] 2026-05-03 17:41:40,368 | INFO     | intersect: 2328517.212264151
[2026-05-03 19:42:36] 2026-05-03 17:41:40,369 | INFO     | chi2: 0.8154339432799075
[2026-05-03 19:42:36] 2026-05-03 17:41:40,369 | INFO     | current chi2=0.8154339432799075 (change=62.31355534767054 %)
[2026-05-03 19:42:36] 2026-05-03 17:41:40,369 | INFO     | sum of square deviations: 2750295288.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,370 | INFO     | sum of deviations: -6902733830.999999
[2026-05-03 19:42:36] 2026-05-03 17:41:40,371 | INFO     | mean x (centered): 0.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,371 | INFO     | mean y: 2329781.7874396136
[2026-05-03 19:42:36] 2026-05-03 17:41:40,371 | INFO     | intersect: 2329781.7874396136
[2026-05-03 19:42:36] 2026-05-03 17:41:40,371 | INFO     | chi2: 0.809631187006126
[2026-05-03 19:42:36] 2026-05-03 17:41:40,371 | INFO     | current chi2=0.809631187006126 (change=0.7116157380499915 %)
[2026-05-03 19:42:36] 2026-05-03 17:41:40,371 | INFO     | left removable region: 10
[2026-05-03 19:42:36] 2026-05-03 17:41:40,372 | INFO     | sum of square deviations: 2334722845.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,373 | INFO     | sum of deviations: 5220433588.499999
[2026-05-03 19:42:36] 2026-05-03 17:41:40,373 | INFO     | mean x (centered): 0.0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,373 | INFO     | mean y: 2339060.8826530613
[2026-05-03 19:42:36] 2026-05-03 17:41:40,373 | INFO     | intersect: 2339060.8826530613
[2026-05-03 19:42:36] 2026-05-03 17:41:40,374 | INFO     | chi2: 0.0016572270424171955
[2026-05-03 19:42:36] 2026-05-03 17:41:40,374 | INFO     | current memory leak: 2.24 B/s (using 196 data points, chi2=0.00)
[2026-05-03 19:42:36] 2026-05-03 17:41:40,374 | INFO     | could have reported an average CPU frequency of 2638 MHz (11 samples)
[2026-05-03 19:42:36] 2026-05-03 17:41:40,375 | INFO     | ..............................
[2026-05-03 19:42:36] 2026-05-03 17:41:40,375 | INFO     | . Timing measurements:
[2026-05-03 19:42:36] 2026-05-03 17:41:40,375 | INFO     | . get job = 0 s
[2026-05-03 19:42:36] 2026-05-03 17:41:40,375 | INFO     | . initial setup = 5 s
[2026-05-03 19:42:36] 2026-05-03 17:41:40,375 | INFO     | . payload setup = 9 s
[2026-05-03 19:42:36] 2026-05-03 17:41:40,375 | INFO     | . stage-in = 0 s
[2026-05-03 19:42:36] 2026-05-03 17:41:40,375 | INFO     | . payload execution = 13201 s
[2026-05-03 19:42:36] 2026-05-03 17:41:40,375 | INFO     | . stage-out = 1 s
[2026-05-03 19:42:36] 2026-05-03 17:41:40,375 | INFO     | . log creation = 0 s
[2026-05-03 19:42:36] 2026-05-03 17:41:40,375 | INFO     | ..............................
[2026-05-03 19:42:36] 2026-05-03 17:41:40,468 | INFO     | 
[2026-05-03 19:42:36] 2026-05-03 17:41:40,469 | INFO     | job summary report
[2026-05-03 19:42:36] 2026-05-03 17:41:40,469 | INFO     | --------------------------------------------------
[2026-05-03 19:42:36] 2026-05-03 17:41:40,469 | INFO     | PanDA job id: 7122772355
[2026-05-03 19:42:36] 2026-05-03 17:41:40,469 | INFO     | task id: 49645815
[2026-05-03 19:42:36] 2026-05-03 17:41:40,469 | INFO     | errors: (none)
[2026-05-03 19:42:36] 2026-05-03 17:41:40,469 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-03 19:42:36] 2026-05-03 17:41:40,469 | INFO     | pilot state: finished 
[2026-05-03 19:42:36] 2026-05-03 17:41:40,469 | INFO     | transexitcode: 0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,469 | INFO     | exeerrorcode: 0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,469 | INFO     | exeerrordiag: 
[2026-05-03 19:42:36] 2026-05-03 17:41:40,470 | INFO     | exitcode: 0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,470 | INFO     | exitmsg: OK
[2026-05-03 19:42:36] 2026-05-03 17:41:40,470 | INFO     | cpuconsumptiontime: 50764 s
[2026-05-03 19:42:36] 2026-05-03 17:41:40,470 | INFO     | nevents: 400
[2026-05-03 19:42:36] 2026-05-03 17:41:40,470 | INFO     | neventsw: 0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,470 | INFO     | pid: 796794
[2026-05-03 19:42:36] 2026-05-03 17:41:40,470 | INFO     | pgrp: 796794
[2026-05-03 19:42:36] 2026-05-03 17:41:40,470 | INFO     | corecount: 4
[2026-05-03 19:42:36] 2026-05-03 17:41:40,470 | INFO     | event service: False
[2026-05-03 19:42:36] 2026-05-03 17:41:40,470 | INFO     | sizes: {0: 2275416, 1: 2277245, 11: 2277245, 13215: 2307381, 13216: 2307380, 13217: 2316456, 13219: 2316834}
[2026-05-03 19:42:36] 2026-05-03 17:41:40,470 | INFO     | --------------------------------------------------
[2026-05-03 19:42:36] 2026-05-03 17:41:40,470 | INFO     | 
[2026-05-03 19:42:36] 2026-05-03 17:41:40,471 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot52/slots/0
[2026-05-03 19:42:36] 2026-05-03 17:41:40,493 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,494 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,494 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,494 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,494 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,494 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,494 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,494 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,494 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,495 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,495 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,495 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,495 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-03 19:42:36] 2026-05-03 17:41:40,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,495 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-03 19:42:36] 2026-05-03 17:41:40,495 | INFO     | job 7122772355 has completed (purged errors)
[2026-05-03 19:42:36] 2026-05-03 17:41:40,495 | INFO     | overall cleanup function is called
[2026-05-03 19:42:36] 2026-05-03 17:41:41,502 | INFO     | --- collectZombieJob: --- 10, [796794]
[2026-05-03 19:42:36] 2026-05-03 17:41:41,503 | INFO     | zombie collector waiting for pid 796794
[2026-05-03 19:42:36] 2026-05-03 17:41:41,503 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-03 19:42:36] 2026-05-03 17:41:41,503 | INFO     | collected zombie processes
[2026-05-03 19:42:36] 2026-05-03 17:41:41,503 | INFO     | will attempt to kill all subprocesses of pid=796794
[2026-05-03 19:42:36] 2026-05-03 17:41:41,815 | INFO     | process IDs to be killed: [796794] (in reverse order)
[2026-05-03 19:42:36] 2026-05-03 17:41:41,942 | WARNING  | found no corresponding commands to process id(s)
[2026-05-03 19:42:36] 2026-05-03 17:41:41,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-03 19:42:36] 2026-05-03 17:41:41,955 | INFO     | did not find any defunct processes belonging to 796794
[2026-05-03 19:42:36] 2026-05-03 17:41:41,967 | INFO     | did not find any defunct processes belonging to 796794
[2026-05-03 19:42:36] 2026-05-03 17:41:41,967 | INFO     | Ready for new job
[2026-05-03 19:42:36] 2026-05-03 17:41:41,970 | INFO     | ***************************************
[2026-05-03 19:42:36] 2026-05-03 17:41:41,971 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-03 19:42:36] 2026-05-03 17:41:41,971 | INFO     | ***************************************
[2026-05-03 19:42:36] 2026-05-03 17:41:41,971 | INFO     | 
[2026-05-03 19:42:36] 2026-05-03 17:41:41,975 | INFO     | architecture information:
[2026-05-03 19:42:36] 2026-05-03 17:41:41,975 | INFO     | executing command: cat /etc/os-release
[2026-05-03 19:42:36] 2026-05-03 17:41:41,993 | INFO     | cat /etc/os-release:
[2026-05-03 19:42:36] NAME="CentOS Linux"
[2026-05-03 19:42:36] VERSION="7 (Core)"
[2026-05-03 19:42:36] ID="centos"
[2026-05-03 19:42:36] ID_LIKE="rhel fedora"
[2026-05-03 19:42:36] VERSION_ID="7"
[2026-05-03 19:42:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-03 19:42:36] ANSI_COLOR="0;31"
[2026-05-03 19:42:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-03 19:42:36] HOME_URL="https://www.centos.org/"
[2026-05-03 19:42:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-03 19:42:36] 
[2026-05-03 19:42:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-03 19:42:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-03 19:42:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-03 19:42:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-03 19:42:36] 
[2026-05-03 19:42:36] 2026-05-03 17:41:41,993 | INFO     | ***************************************
[2026-05-03 19:42:36] 2026-05-03 17:41:42,497 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/0
[2026-05-03 19:42:36] 2026-05-03 17:41:42,512 | INFO     | sufficient remaining disk space (48744103936 B)
[2026-05-03 19:42:36] 2026-05-03 17:41:42,513 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-03 19:42:36] 2026-05-03 17:41:42,513 | INFO     | current server update state: UPDATING_FINAL
[2026-05-03 19:42:36] 2026-05-03 17:41:42,513 | INFO     | update_server=False
[2026-05-03 19:42:36] 2026-05-03 17:41:42,513 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-03 19:42:36] 2026-05-03 17:41:42,513 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-03 19:42:36] 2026-05-03 17:41:42,514 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-03 19:42:36] 2026-05-03 17:41:42,514 | INFO     | aborting loop
[2026-05-03 19:42:36] 2026-05-03 17:41:42,756 | INFO     | all data control threads have been joined
[2026-05-03 19:42:36] 2026-05-03 17:41:42,779 | INFO     | job.realtimelogging is not enabled
[2026-05-03 19:42:36] 2026-05-03 17:41:42,975 | INFO     | all job control threads have been joined
[2026-05-03 19:42:36] 2026-05-03 17:41:43,519 | INFO     | [job] retrieve thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:43,519 | INFO     | [job] job monitor thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:43,761 | INFO     | [data] control thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:43,773 | INFO     | all payload control threads have been joined
[2026-05-03 19:42:36] 2026-05-03 17:41:43,785 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:43,845 | INFO     | [payload] failed_post thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:43,904 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-03 19:42:36] 2026-05-03 17:41:43,981 | INFO     | [job] control thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:44,107 | INFO     | [job] validate thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:44,292 | INFO     | [payload] validate_post thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:44,641 | INFO     | [payload] validate_pre thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:44,755 | INFO     | [payload] execute_payloads thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:44,756 | INFO     | [job] create_data_payload thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:44,778 | INFO     | [payload] control thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:44,962 | INFO     | [data] copytool_in thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:45,476 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-03 19:42:36] 2026-05-03 17:41:45,909 | INFO     | [data] copytool_out thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:46,479 | INFO     | [job] queue monitor thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:41:46,516 | INFO     | [data] queue_monitor thread has finished
[2026-05-03 19:42:36] 2026-05-03 17:42:13,369 | INFO     | PID=784808 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-03 19:42:36] 2026-05-03 17:42:13,370 | INFO     | .. there are 11 such processes running
[2026-05-03 19:42:36] 2026-05-03 17:42:13,371 | INFO     | found 0 job(s) in 20 queues
[2026-05-03 19:42:36] 2026-05-03 17:42:13,371 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-03 19:42:36] 2026-05-03 17:42:13,371 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-03 19:42:36] 2026-05-03 17:42:30,469 | INFO     | [monitor] cgroup control has ended
[2026-05-03 19:42:36] 2026-05-03 17:42:30,687 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22362731009856)>', '<ExcThread(monitor, started 22362488833792)>']
[2026-05-03 19:42:36] 2026-05-03 17:42:31,448 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-03 19:42:36] 2026-05-03 17:42:31,448 | INFO     | [monitor] control thread has ended
[2026-05-03 19:42:36] 2026-05-03 17:42:35,710 | INFO     | all workflow threads have been joined
[2026-05-03 19:42:36] 2026-05-03 17:42:35,711 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-03 19:42:36] 2026-05-03 17:42:35,711 | INFO     | traces error code: 0
[2026-05-03 19:42:36] 2026-05-03 17:42:35,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-03 19:42:36] 2026-05-03 17:42:35,851 [wrapper] ==== pilot stdout END ====
[2026-05-03 19:42:36] 2026-05-03 17:42:35,854 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-03 19:42:36] 2026-05-03 17:42:35,857 [wrapper] pilotpid: 784808
[2026-05-03 19:42:36] 2026-05-03 17:42:35,860 [wrapper] Pilot exit status: 0
[2026-05-03 19:42:36] 2026-05-03 17:42:35,870 [wrapper] pandaids: 7122772355
[2026-05-03 19:42:36] 2026-05-03 17:42:35,953 [wrapper] cleanup supervisor_pilot 1073528 784809
[2026-05-03 19:42:36] 2026-05-03 17:42:35,956 [wrapper] Test setup, not cleaning
[2026-05-03 19:42:36] 2026-05-03 17:42:35,959 [wrapper] apfmon messages muted
[2026-05-03 19:42:36] 2026-05-03 17:42:35,962 [wrapper] ==== wrapper stdout END ====
[2026-05-03 19:42:36] 2026-05-03 17:42:35,965 [wrapper] ==== wrapper stderr END ====
[2026-05-03 19:42:36]  *** Error codes and diagnostics ***
[2026-05-03 19:42:36]     "exeErrorCode": 0,
[2026-05-03 19:42:36]     "pilotErrorCode": 0,
[2026-05-03 19:42:36]  *** Listing of results directory ***
[2026-05-03 19:42:36] total 416200
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc    683926 May  1 22:25 pilot3.tar.gz
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc      5631 May  1 22:27 queuedata.json
[2026-05-03 19:42:36] -rwx------. 1 boinc boinc     36322 May  1 22:27 runpilot2-wrapper.sh
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc       100 May  3 16:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-03 19:42:36] -rwxr-xr-x. 1 boinc boinc      7986 May  3 16:00 run_atlas
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc       105 May  3 16:00 job.xml
[2026-05-03 19:42:36] -rw-r--r--. 2 boinc boinc 226789557 May  3 16:00 EVNT.48629115._000494.pool.root.1
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc      6483 May  3 16:00 init_data.xml
[2026-05-03 19:42:36] -rw-r--r--. 2 boinc boinc     15667 May  3 16:00 start_atlas.sh
[2026-05-03 19:42:36] drwxrwx--x. 2 boinc boinc      4096 May  3 16:00 shared
[2026-05-03 19:42:36] -rw-r--r--. 2 boinc boinc    697441 May  3 16:00 input.tar.gz
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc         0 May  3 16:00 boinc_lockfile
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc      2629 May  3 16:00 pandaJob.out
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc   1002987 May  3 16:01 agis_schedconf.cvmfs.json
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc       452 May  3 16:01 workernode_map.json
[2026-05-03 19:42:36] drwx------. 5 boinc boinc      4096 May  3 16:01 pilot3
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc 192099519 May  3 19:41 HITS.49645815._025616.pool.root.1
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc       488 May  3 19:41 boinc_task_state.xml
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc      1033 May  3 19:41 memory_monitor_summary.json
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc   1508687 May  3 19:41 agis_ddmendpoints.agis.ALL.json
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc    329573 May  3 19:41 log.49645815._025616.job.log.tgz.1
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc      6438 May  3 19:41 heartbeat_new.json
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc      6329 May  3 19:41 heartbeat.json
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc        95 May  3 19:42 pilot_heartbeat.json
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc        28 May  3 19:42 wrapper_checkpoint.txt
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc      8192 May  3 19:42 boinc_mmap_file
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc      4903 May  3 19:42 pilotlog.txt
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc   1251297 May  3 19:42 log.49645815._025616.job.log.1
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc       357 May  3 19:42 output.list
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc       410 May  3 19:42 runtime_log
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc   1597440 May  3 19:42 result.tar.gz
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc      8828 May  3 19:42 runtime_log.err
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc       664 May  3 19:42 0cc6a4e49ca6.diag
[2026-05-03 19:42:36] -rw-r--r--. 1 boinc boinc     20812 May  3 19:42 stderr.txt
[2026-05-03 19:42:36] HITS file was successfully produced:
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc 192099519 May  3 19:41 shared/HITS.pool.root.1
[2026-05-03 19:42:36]  *** Contents of shared directory: ***
[2026-05-03 19:42:36] total 411344
[2026-05-03 19:42:36] -rw-r--r--. 2 boinc boinc 226789557 May  3 16:00 ATLAS.root_0
[2026-05-03 19:42:36] -rw-r--r--. 2 boinc boinc     15667 May  3 16:00 start_atlas.sh
[2026-05-03 19:42:36] -rw-r--r--. 2 boinc boinc    697441 May  3 16:00 input.tar.gz
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc 192099519 May  3 19:41 HITS.pool.root.1
[2026-05-03 19:42:36] -rw-------. 1 boinc boinc   1597440 May  3 19:42 result.tar.gz
19:42:37 (778771): run_atlas exited; CPU time 51217.071662
19:42:37 (778771): called boinc_finish(0)

</stderr_txt>
]]>

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