Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:26:11 (2667041): wrapper (7.7.26015): starting
08:26:11 (2667041): wrapper: running run_atlas (--nthreads 12)
[2026-05-04 08:26:11] Arguments: --nthreads 12
[2026-05-04 08:26:11] Threads: 12
[2026-05-04 08:26:11] Checking for CVMFS
[2026-05-04 08:26:11] No cvmfs_config command found, will try listing directly
[2026-05-04 08:26:11] CVMFS is ok
[2026-05-04 08:26:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-04 08:26:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-04 08:26:11] Further information can be found at the LHC@home message board.
[2026-05-04 08:26:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-04 08:26:11] Checking for apptainer binary...
[2026-05-04 08:26:11] which: no apptainer in ((null))
[2026-05-04 08:26:11] apptainer is not installed, using version from CVMFS
[2026-05-04 08:26:11] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-04 08:26:11] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/9/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut19.grid.cesnet.cz
[2026-05-04 08:26:11] apptainer works
[2026-05-04 08:26:11] Set ATHENA_PROC_NUMBER=12
[2026-05-04 08:26:11] Set ATHENA_CORE_NUMBER=12
[2026-05-04 08:26:11] Starting ATLAS job with PandaID=7122742555
[2026-05-04 08:26:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-04 08:52:31]  *** The last 200 lines of the pilot log: ***
[2026-05-04 08:52:31]  filetype=log
[2026-05-04 08:52:31]  guid=0bcc3b22-0205-4928-b364-7f2febd47038
[2026-05-04 08:52:31]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-04 08:52:31]  is_altstaged=None
[2026-05-04 08:52:31]  is_tar=False
[2026-05-04 08:52:31]  lfn=log.49645815._024538.job.log.tgz.1
[2026-05-04 08:52:31]  mtime=0
[2026-05-04 08:52:31]  protocol_id=None
[2026-05-04 08:52:31]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-04 08:52:31]  replicas=None
[2026-05-04 08:52:31]  scope=mc23_13p6TeV
[2026-05-04 08:52:31]  status=None
[2026-05-04 08:52:31]  status_code=0
[2026-05-04 08:52:31]  storage_token=
[2026-05-04 08:52:31]  surl=/var/lib/boinc/var/slot48/slots/9/PanDA_Pilot-7122742555/log.49645815._024538.job.log.tgz.1
[2026-05-04 08:52:31]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/11/log.49645815._024538.job.log.tgz.1
[2026-05-04 08:52:31]  workdir=None
[2026-05-04 08:52:31] ]
[2026-05-04 08:52:31] 2026-05-04 06:51:53,785 | INFO     | transferring file log.49645815._024538.job.log.tgz.1 from /var/lib/boinc/var/slot48/slots/9/PanDA_Pilot-7122742555/log.49645815._024538.job.log.tgz.1 to /var/lib/b
[2026-05-04 08:52:31] 2026-05-04 06:51:53,785 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot48/slots/9/PanDA_Pilot-7122742555/log.49645815._024538.job.log.tgz.1 /var/lib/boinc/var/slot48/slots/9/lo
[2026-05-04 08:52:31] 2026-05-04 06:51:53,796 | INFO     | adding to output.list: log.49645815._024538.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ea/11/log.49645815._024538.job.log.tg
[2026-05-04 08:52:31] 2026-05-04 06:51:53,797 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-04 08:52:31] 2026-05-04 06:51:53,797 | INFO     | summary of transferred files:
[2026-05-04 08:52:31] 2026-05-04 06:51:53,797 | INFO     |  -- lfn=log.49645815._024538.job.log.tgz.1, status_code=0, status=transferred
[2026-05-04 08:52:31] 2026-05-04 06:51:53,797 | INFO     | stage-out finished correctly
[2026-05-04 08:52:31] 2026-05-04 06:51:54,894 | INFO     | monitor loop #120: job 0:7122742555 is in state 'finished'
[2026-05-04 08:52:31] 2026-05-04 06:51:54,895 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-04 08:52:31] 2026-05-04 06:51:55,902 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-04 08:52:31] 2026-05-04 06:51:57,205 | INFO     | PID=2671555 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-04 08:52:31] 2026-05-04 06:51:57,205 | INFO     | .. there are 8 such processes running
[2026-05-04 08:52:31] 2026-05-04 06:51:57,398 | INFO     | monitor loop #121: job 0:7122742555 is in state 'finished'
[2026-05-04 08:52:31] 2026-05-04 06:51:57,398 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-04 08:52:31] 2026-05-04 06:51:58,498 | INFO     | job 7122742555 has state=finished
[2026-05-04 08:52:31] 2026-05-04 06:51:58,498 | INFO     | preparing for final server update for job 7122742555 in state='finished'
[2026-05-04 08:52:31] 2026-05-04 06:51:58,498 | INFO     | reading metadata from: /var/lib/boinc/var/slot48/slots/9/PanDA_Pilot-7122742555/jobReport.json
[2026-05-04 08:52:31] 2026-05-04 06:51:58,499 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot48/slots/9/workernode_map.json
[2026-05-04 08:52:31] 2026-05-04 06:51:58,499 | INFO     | this job has now completed (state=finished)
[2026-05-04 08:52:31] 2026-05-04 06:51:58,499 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-04 08:52:31] 2026-05-04 06:51:58,499 | INFO     | log transfer has been attempted: DONE
[2026-05-04 08:52:31] 2026-05-04 06:51:58,499 | INFO     | job 7122742555 has finished - writing final server update
[2026-05-04 08:52:31] 2026-05-04 06:51:58,500 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2371937/.job.ad'
[2026-05-04 08:52:31] 2026-05-04 06:51:58,500 | INFO     | total number of processed events: 400 (read)
[2026-05-04 08:52:31] 2026-05-04 06:51:58,509 | INFO     | using path: /var/lib/boinc/var/slot48/slots/9/PanDA_Pilot-7122742555/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 08:52:31] 2026-05-04 06:51:58,509 | INFO     | extracted standard info from prmon json
[2026-05-04 08:52:31] 2026-05-04 06:51:58,509 | INFO     | extracted standard memory fields from prmon json
[2026-05-04 08:52:31] 2026-05-04 06:51:58,509 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-04 08:52:31] 2026-05-04 06:51:58,509 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-04 08:52:31] 2026-05-04 06:51:58,509 | INFO     | fitting pss+swap vs Time
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | sum of square deviations: 1802824.5
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | sum of deviations: 100110699.0
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | mean x (centered): 0.0
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | mean y: 2743186.222222222
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | intersect: 2743186.222222222
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | chi2: 6.367512319723276e-05
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | current memory leak: 55.53 B/s (using 18 data points, chi2=0.00)
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | could have reported an average CPU frequency of 3583 MHz (4 samples)
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | ..............................
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | . Timing measurements:
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | . get job = 0 s
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | . initial setup = 2 s
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | . payload setup = 3 s
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | . stage-in = 0 s
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | . payload execution = 1516 s
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | . stage-out = 0 s
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | . log creation = 0 s
[2026-05-04 08:52:31] 2026-05-04 06:51:58,510 | INFO     | ..............................
[2026-05-04 08:52:31] 2026-05-04 06:51:58,593 | INFO     | 
[2026-05-04 08:52:31] 2026-05-04 06:51:58,593 | INFO     | job summary report
[2026-05-04 08:52:31] 2026-05-04 06:51:58,593 | INFO     | --------------------------------------------------
[2026-05-04 08:52:31] 2026-05-04 06:51:58,593 | INFO     | PanDA job id: 7122742555
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | task id: 49645815
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | errors: (none)
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | pilot state: finished 
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | transexitcode: 0
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | exeerrorcode: 0
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | exeerrordiag: 
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | exitcode: 0
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | exitmsg: OK
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | cpuconsumptiontime: 16412 s
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | nevents: 400
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | neventsw: 0
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | pid: 2685631
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | pgrp: 2685631
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | corecount: 12
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | event service: False
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | sizes: {0: 2277213, 11: 2277213, 1523: 2302020, 1525: 2311040, 1527: 2311096, 1529: 2311290}
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | --------------------------------------------------
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | 
[2026-05-04 08:52:31] 2026-05-04 06:51:58,594 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/9
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,612 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-04 08:52:31] 2026-05-04 06:51:58,613 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,613 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-04 08:52:31] 2026-05-04 06:51:58,613 | INFO     | job 7122742555 has completed (purged errors)
[2026-05-04 08:52:31] 2026-05-04 06:51:58,613 | INFO     | overall cleanup function is called
[2026-05-04 08:52:31] 2026-05-04 06:51:59,620 | INFO     | --- collectZombieJob: --- 10, [2685631]
[2026-05-04 08:52:31] 2026-05-04 06:51:59,620 | INFO     | zombie collector waiting for pid 2685631
[2026-05-04 08:52:31] 2026-05-04 06:51:59,621 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-04 08:52:31] 2026-05-04 06:51:59,621 | INFO     | collected zombie processes
[2026-05-04 08:52:31] 2026-05-04 06:51:59,621 | INFO     | will attempt to kill all subprocesses of pid=2685631
[2026-05-04 08:52:31] 2026-05-04 06:51:59,763 | INFO     | process IDs to be killed: [2685631] (in reverse order)
[2026-05-04 08:52:31] 2026-05-04 06:51:59,843 | WARNING  | found no corresponding commands to process id(s)
[2026-05-04 08:52:31] 2026-05-04 06:51:59,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-04 08:52:31] 2026-05-04 06:51:59,857 | INFO     | did not find any defunct processes belonging to 2685631
[2026-05-04 08:52:31] 2026-05-04 06:51:59,865 | INFO     | did not find any defunct processes belonging to 2685631
[2026-05-04 08:52:31] 2026-05-04 06:51:59,865 | INFO     | Ready for new job
[2026-05-04 08:52:31] 2026-05-04 06:51:59,866 | INFO     | ***************************************
[2026-05-04 08:52:31] 2026-05-04 06:51:59,866 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-04 08:52:31] 2026-05-04 06:51:59,866 | INFO     | ***************************************
[2026-05-04 08:52:31] 2026-05-04 06:51:59,866 | INFO     | 
[2026-05-04 08:52:31] 2026-05-04 06:51:59,869 | INFO     | architecture information:
[2026-05-04 08:52:31] 2026-05-04 06:51:59,869 | INFO     | executing command: cat /etc/os-release
[2026-05-04 08:52:31] 2026-05-04 06:51:59,883 | INFO     | cat /etc/os-release:
[2026-05-04 08:52:31] NAME="CentOS Linux"
[2026-05-04 08:52:31] VERSION="7 (Core)"
[2026-05-04 08:52:31] ID="centos"
[2026-05-04 08:52:31] ID_LIKE="rhel fedora"
[2026-05-04 08:52:31] VERSION_ID="7"
[2026-05-04 08:52:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-04 08:52:31] ANSI_COLOR="0;31"
[2026-05-04 08:52:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-04 08:52:31] HOME_URL="https://www.centos.org/"
[2026-05-04 08:52:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-04 08:52:31] 
[2026-05-04 08:52:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-04 08:52:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-04 08:52:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-04 08:52:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-04 08:52:31] 
[2026-05-04 08:52:31] 2026-05-04 06:51:59,884 | INFO     | ***************************************
[2026-05-04 08:52:31] 2026-05-04 06:52:00,387 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/9
[2026-05-04 08:52:31] 2026-05-04 06:52:00,403 | INFO     | sufficient remaining disk space (295355547648 B)
[2026-05-04 08:52:31] 2026-05-04 06:52:00,403 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-04 08:52:31] 2026-05-04 06:52:00,403 | INFO     | current server update state: UPDATING_FINAL
[2026-05-04 08:52:31] 2026-05-04 06:52:00,403 | INFO     | update_server=False
[2026-05-04 08:52:31] 2026-05-04 06:52:00,403 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-04 08:52:31] 2026-05-04 06:52:00,404 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-04 08:52:31] 2026-05-04 06:52:00,819 | INFO     | all data control threads have been joined
[2026-05-04 08:52:31] 2026-05-04 06:52:00,906 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-04 08:52:31] 2026-05-04 06:52:00,906 | INFO     | aborting loop
[2026-05-04 08:52:31] 2026-05-04 06:52:01,047 | INFO     | all job control threads have been joined
[2026-05-04 08:52:31] 2026-05-04 06:52:01,351 | INFO     | all payload control threads have been joined
[2026-05-04 08:52:31] 2026-05-04 06:52:01,404 | INFO     | [job] retrieve thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:01,409 | INFO     | [job] queue monitor thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:01,569 | INFO     | [payload] validate_post thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:01,824 | INFO     | [data] control thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:01,833 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-04 08:52:31] 2026-05-04 06:52:01,912 | INFO     | [job] job monitor thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:01,932 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-04 08:52:31] 2026-05-04 06:52:01,998 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:02,053 | INFO     | [job] control thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:02,312 | INFO     | [payload] execute_payloads thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:02,357 | INFO     | [payload] control thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:02,589 | INFO     | [job] validate thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:02,637 | INFO     | [payload] failed_post thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:02,648 | INFO     | [job] create_data_payload thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:02,692 | INFO     | [payload] validate_pre thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:02,783 | INFO     | [data] copytool_in thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:03,838 | INFO     | [data] copytool_out thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:05,938 | INFO     | [data] queue_monitor thread has finished
[2026-05-04 08:52:31] 2026-05-04 06:52:19,595 | INFO     | [monitor] cgroup control has ended
[2026-05-04 08:52:31] 2026-05-04 06:52:20,824 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23263054874432)>', '<ExcThread(monitor, started 23262821369600)>']
[2026-05-04 08:52:31] 2026-05-04 06:52:25,829 | INFO     | all workflow threads have been joined
[2026-05-04 08:52:31] 2026-05-04 06:52:25,830 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-04 08:52:31] 2026-05-04 06:52:25,830 | INFO     | traces error code: 0
[2026-05-04 08:52:31] 2026-05-04 06:52:25,830 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-04 08:52:31] 2026-05-04 06:52:31,500 | INFO     | PID=2671555 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-04 08:52:31] 2026-05-04 06:52:31,500 | INFO     | .. there are 8 such processes running
[2026-05-04 08:52:31] 2026-05-04 06:52:31,500 | INFO     | found 0 job(s) in 20 queues
[2026-05-04 08:52:31] 2026-05-04 06:52:31,500 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-04 08:52:31] 2026-05-04 06:52:31,500 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-04 08:52:31] 2026-05-04 06:52:31,500 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-04 08:52:31] 2026-05-04 06:52:31,500 | INFO     | [monitor] control thread has ended
[2026-05-04 08:52:31] 2026-05-04 06:52:31,565 [wrapper] ==== pilot stdout END ====
[2026-05-04 08:52:31] 2026-05-04 06:52:31,568 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-04 08:52:31] 2026-05-04 06:52:31,570 [wrapper] pilotpid: 2671555
[2026-05-04 08:52:31] 2026-05-04 06:52:31,572 [wrapper] Pilot exit status: 0
[2026-05-04 08:52:31] 2026-05-04 06:52:31,577 [wrapper] pandaids: 7122742555
[2026-05-04 08:52:31] 2026-05-04 06:52:31,630 [wrapper] cleanup supervisor_pilot 2813561 2671556
[2026-05-04 08:52:31] 2026-05-04 06:52:31,631 [wrapper] Test setup, not cleaning
[2026-05-04 08:52:31] 2026-05-04 06:52:31,632 [wrapper] apfmon messages muted
[2026-05-04 08:52:31] 2026-05-04 06:52:31,633 [wrapper] ==== wrapper stdout END ====
[2026-05-04 08:52:31] 2026-05-04 06:52:31,634 [wrapper] ==== wrapper stderr END ====
[2026-05-04 08:52:31]  *** Error codes and diagnostics ***
[2026-05-04 08:52:31]     "exeErrorCode": 0,
[2026-05-04 08:52:31]     "pilotErrorCode": 0,
[2026-05-04 08:52:31]  *** Listing of results directory ***
[2026-05-04 08:52:31] total 424176
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc    683926 May  1 21:08 pilot3.tar.gz
[2026-05-04 08:52:31] -rwx------. 1 boinc boinc     36322 May  1 21:10 runpilot2-wrapper.sh
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc      5631 May  1 21:10 queuedata.json
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc       100 May  4 08:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-04 08:52:31] -rwxr-xr-x. 1 boinc boinc      7986 May  4 08:26 run_atlas
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc       105 May  4 08:26 job.xml
[2026-05-04 08:52:31] -rw-r--r--. 2 boinc boinc     15667 May  4 08:26 start_atlas.sh
[2026-05-04 08:52:31] drwxrwx--x. 2 boinc boinc      4096 May  4 08:26 shared
[2026-05-04 08:52:31] -rw-r--r--. 2 boinc boinc    697443 May  4 08:26 input.tar.gz
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc      6627 May  4 08:26 init_data.xml
[2026-05-04 08:52:31] -rw-r--r--. 2 boinc boinc 224295359 May  4 08:26 EVNT.48629115._000302.pool.root.1
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc         0 May  4 08:26 boinc_lockfile
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc      2627 May  4 08:26 pandaJob.out
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc   1003025 May  4 08:26 agis_schedconf.cvmfs.json
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc   1508687 May  4 08:26 agis_ddmendpoints.agis.ALL.json
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc       442 May  4 08:26 workernode_map.json
[2026-05-04 08:52:31] drwx------. 5 boinc boinc      4096 May  4 08:26 pilot3
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc 204858144 May  4 08:51 HITS.49645815._024538.pool.root.1
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc       487 May  4 08:51 boinc_task_state.xml
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc        95 May  4 08:51 pilot_heartbeat.json
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc      1030 May  4 08:51 memory_monitor_summary.json
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc    337085 May  4 08:51 log.49645815._024538.job.log.tgz.1
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc      6375 May  4 08:51 heartbeat_new.json
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc      6266 May  4 08:51 heartbeat.json
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc        27 May  4 08:52 wrapper_checkpoint.txt
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc       822 May  4 08:52 pilotlog.txt
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc      8192 May  4 08:52 boinc_mmap_file
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc    194494 May  4 08:52 log.49645815._024538.job.log.1
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc       357 May  4 08:52 output.list
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc       410 May  4 08:52 runtime_log
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc    552960 May  4 08:52 result.tar.gz
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc      8829 May  4 08:52 runtime_log.err
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc       657 May  4 08:52 fa93b2a868a5.diag
[2026-05-04 08:52:31] -rw-r--r--. 1 boinc boinc     21197 May  4 08:52 stderr.txt
[2026-05-04 08:52:31] HITS file was successfully produced:
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc 204858144 May  4 08:51 shared/HITS.pool.root.1
[2026-05-04 08:52:31]  *** Contents of shared directory: ***
[2026-05-04 08:52:31] total 420348
[2026-05-04 08:52:31] -rw-r--r--. 2 boinc boinc     15667 May  4 08:26 start_atlas.sh
[2026-05-04 08:52:31] -rw-r--r--. 2 boinc boinc    697443 May  4 08:26 input.tar.gz
[2026-05-04 08:52:31] -rw-r--r--. 2 boinc boinc 224295359 May  4 08:26 ATLAS.root_0
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc 204858144 May  4 08:51 HITS.pool.root.1
[2026-05-04 08:52:31] -rw-------. 1 boinc boinc    552960 May  4 08:52 result.tar.gz
08:52:33 (2667041): run_atlas exited; CPU time 16427.776053
08:52:33 (2667041): called boinc_finish(0)

</stderr_txt>
]]>

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