Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:29:36 (2001546): wrapper (7.7.26015): starting
01:29:36 (2001546): wrapper: running run_atlas (--nthreads 4)
[2026-05-05 01:29:36] Arguments: --nthreads 4
[2026-05-05 01:29:36] Threads: 4
[2026-05-05 01:29:36] Checking for CVMFS
[2026-05-05 01:29:36] No cvmfs_config command found, will try listing directly
[2026-05-05 01:29:36] CVMFS is ok
[2026-05-05 01:29:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-05 01:29:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-05 01:29:36] Further information can be found at the LHC@home message board.
[2026-05-05 01:29:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-05 01:29:36] Checking for apptainer binary...
[2026-05-05 01:29:36] which: no apptainer in ((null))
[2026-05-05 01:29:36] apptainer is not installed, using version from CVMFS
[2026-05-05 01:29:36] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-05 01:29:37] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot88/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-05-05 01:29:37] apptainer works
[2026-05-05 01:29:37] Set ATHENA_PROC_NUMBER=4
[2026-05-05 01:29:37] Set ATHENA_CORE_NUMBER=4
[2026-05-05 01:29:37] Starting ATLAS job with PandaID=7122741195
[2026-05-05 01:29:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot88/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-05 05:05:31]  *** The last 200 lines of the pilot log: ***
[2026-05-05 05:05:31] 2026-05-05 03:04:52,794 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot88/slots/0/workernode_map.json
[2026-05-05 05:05:31] 2026-05-05 03:04:52,795 | INFO     | this job has now completed (state=finished)
[2026-05-05 05:05:31] 2026-05-05 03:04:52,795 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-05 05:05:31] 2026-05-05 03:04:52,795 | INFO     | log transfer has been attempted: DONE
[2026-05-05 05:05:31] 2026-05-05 03:04:52,796 | INFO     | job 7122741195 has finished - writing final server update
[2026-05-05 05:05:31] 2026-05-05 03:04:52,796 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2844311/.job.ad'
[2026-05-05 05:05:31] 2026-05-05 03:04:52,797 | INFO     | total number of processed events: 400 (read)
[2026-05-05 05:05:31] 2026-05-05 03:04:52,828 | INFO     | using path: /var/lib/boinc/var/slot88/slots/0/PanDA_Pilot-7122741195/memory_monitor_summary.json (trf name=prmon)
[2026-05-05 05:05:31] 2026-05-05 03:04:52,828 | INFO     | extracted standard info from prmon json
[2026-05-05 05:05:31] 2026-05-05 03:04:52,829 | INFO     | extracted standard memory fields from prmon json
[2026-05-05 05:05:31] 2026-05-05 03:04:52,829 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-05 05:05:31] 2026-05-05 03:04:52,829 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-05 05:05:31] 2026-05-05 03:04:52,833 | INFO     | fitting pss+swap vs Time
[2026-05-05 05:05:31] 2026-05-05 03:04:52,834 | INFO     | sum of square deviations: 2912836010.0
[2026-05-05 05:05:31] 2026-05-05 03:04:52,835 | INFO     | sum of deviations: 10592683428.000002
[2026-05-05 05:05:31] 2026-05-05 03:04:52,835 | INFO     | mean x (centered): 0.0
[2026-05-05 05:05:31] 2026-05-05 03:04:52,835 | INFO     | mean y: 2337685.9857819905
[2026-05-05 05:05:31] 2026-05-05 03:04:52,836 | INFO     | intersect: 2337685.9857819905
[2026-05-05 05:05:31] 2026-05-05 03:04:52,836 | INFO     | chi2: 1.3815774909017502
[2026-05-05 05:05:31] 2026-05-05 03:04:52,836 | INFO     | sum of square deviations: 2710627567.5
[2026-05-05 05:05:31] 2026-05-05 03:04:52,838 | INFO     | sum of deviations: 10214219633.5
[2026-05-05 05:05:31] 2026-05-05 03:04:52,838 | INFO     | mean x (centered): 0.0
[2026-05-05 05:05:31] 2026-05-05 03:04:52,838 | INFO     | mean y: 2337400.490291262
[2026-05-05 05:05:31] 2026-05-05 03:04:52,838 | INFO     | intersect: 2337400.490291262
[2026-05-05 05:05:31] 2026-05-05 03:04:52,838 | INFO     | chi2: 1.3820932689292909
[2026-05-05 05:05:31] 2026-05-05 03:04:52,839 | INFO     | current chi2=1.3820932689292909 (change=-0.0373325442066961 %)
[2026-05-05 05:05:31] 2026-05-05 03:04:52,839 | INFO     | right removable region: 205
[2026-05-05 05:05:31] 2026-05-05 03:04:52,839 | INFO     | sum of square deviations: 2710627567.5
[2026-05-05 05:05:31] 2026-05-05 03:04:52,840 | INFO     | sum of deviations: -15919477379.0
[2026-05-05 05:05:31] 2026-05-05 03:04:52,840 | INFO     | mean x (centered): 0.0
[2026-05-05 05:05:31] 2026-05-05 03:04:52,841 | INFO     | mean y: 2357419.980582524
[2026-05-05 05:05:31] 2026-05-05 03:04:52,841 | INFO     | intersect: 2357419.980582524
[2026-05-05 05:05:31] 2026-05-05 03:04:52,841 | INFO     | chi2: 0.0364397559638477
[2026-05-05 05:05:31] 2026-05-05 03:04:52,841 | INFO     | current chi2=0.0364397559638477 (change=97.36245297829342 %)
[2026-05-05 05:05:31] 2026-05-05 03:04:52,841 | INFO     | sum of square deviations: 2518000700.0
[2026-05-05 05:05:31] 2026-05-05 03:04:52,843 | INFO     | sum of deviations: -12787357349.0
[2026-05-05 05:05:31] 2026-05-05 03:04:52,843 | INFO     | mean x (centered): 0.0
[2026-05-05 05:05:31] 2026-05-05 03:04:52,843 | INFO     | mean y: 2354924.4776119404
[2026-05-05 05:05:31] 2026-05-05 03:04:52,843 | INFO     | intersect: 2354924.4776119404
[2026-05-05 05:05:31] 2026-05-05 03:04:52,844 | INFO     | chi2: 0.029712394571641383
[2026-05-05 05:05:31] 2026-05-05 03:04:52,844 | INFO     | current chi2=0.029712394571641383 (change=18.461598367674608 %)
[2026-05-05 05:05:31] 2026-05-05 03:04:52,844 | INFO     | left removable region: 10
[2026-05-05 05:05:31] 2026-05-05 03:04:52,844 | INFO     | sum of square deviations: 2299168690.0
[2026-05-05 05:05:31] 2026-05-05 03:04:52,846 | INFO     | sum of deviations: -12585721787.999998
[2026-05-05 05:05:31] 2026-05-05 03:04:52,846 | INFO     | mean x (centered): 0.0
[2026-05-05 05:05:31] 2026-05-05 03:04:52,846 | INFO     | mean y: 2355093.1333333333
[2026-05-05 05:05:31] 2026-05-05 03:04:52,846 | INFO     | intersect: 2355093.1333333333
[2026-05-05 05:05:31] 2026-05-05 03:04:52,846 | INFO     | chi2: 0.028957891073407134
[2026-05-05 05:05:31] 2026-05-05 03:04:52,847 | INFO     | current memory leak: -5.47 B/s (using 195 data points, chi2=0.03)
[2026-05-05 05:05:31] 2026-05-05 03:04:52,848 | INFO     | could have reported an average CPU frequency of 2654 MHz (11 samples)
[2026-05-05 05:05:31] 2026-05-05 03:04:52,848 | INFO     | ..............................
[2026-05-05 05:05:31] 2026-05-05 03:04:52,848 | INFO     | . Timing measurements:
[2026-05-05 05:05:31] 2026-05-05 03:04:52,848 | INFO     | . get job = 0 s
[2026-05-05 05:05:31] 2026-05-05 03:04:52,849 | INFO     | . initial setup = 9 s
[2026-05-05 05:05:31] 2026-05-05 03:04:52,849 | INFO     | . payload setup = 16 s
[2026-05-05 05:05:31] 2026-05-05 03:04:52,849 | INFO     | . stage-in = 0 s
[2026-05-05 05:05:31] 2026-05-05 03:04:52,849 | INFO     | . payload execution = 12856 s
[2026-05-05 05:05:31] 2026-05-05 03:04:52,849 | INFO     | . stage-out = 1 s
[2026-05-05 05:05:31] 2026-05-05 03:04:52,849 | INFO     | . log creation = 0 s
[2026-05-05 05:05:31] 2026-05-05 03:04:52,849 | INFO     | ..............................
[2026-05-05 05:05:31] 2026-05-05 03:04:53,036 | INFO     | 
[2026-05-05 05:05:31] 2026-05-05 03:04:53,037 | INFO     | job summary report
[2026-05-05 05:05:31] 2026-05-05 03:04:53,037 | INFO     | --------------------------------------------------
[2026-05-05 05:05:31] 2026-05-05 03:04:53,038 | INFO     | PanDA job id: 7122741195
[2026-05-05 05:05:31] 2026-05-05 03:04:53,038 | INFO     | task id: 49645815
[2026-05-05 05:05:31] 2026-05-05 03:04:53,038 | INFO     | errors: (none)
[2026-05-05 05:05:31] 2026-05-05 03:04:53,038 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-05 05:05:31] 2026-05-05 03:04:53,038 | INFO     | pilot state: finished 
[2026-05-05 05:05:31] 2026-05-05 03:04:53,038 | INFO     | transexitcode: 0
[2026-05-05 05:05:31] 2026-05-05 03:04:53,038 | INFO     | exeerrorcode: 0
[2026-05-05 05:05:31] 2026-05-05 03:04:53,038 | INFO     | exeerrordiag: 
[2026-05-05 05:05:31] 2026-05-05 03:04:53,038 | INFO     | exitcode: 0
[2026-05-05 05:05:31] 2026-05-05 03:04:53,039 | INFO     | exitmsg: OK
[2026-05-05 05:05:31] 2026-05-05 03:04:53,039 | INFO     | cpuconsumptiontime: 49286 s
[2026-05-05 05:05:31] 2026-05-05 03:04:53,039 | INFO     | nevents: 400
[2026-05-05 05:05:31] 2026-05-05 03:04:53,039 | INFO     | neventsw: 0
[2026-05-05 05:05:31] 2026-05-05 03:04:53,039 | INFO     | pid: 2011840
[2026-05-05 05:05:31] 2026-05-05 03:04:53,039 | INFO     | pgrp: 2011840
[2026-05-05 05:05:31] 2026-05-05 03:04:53,039 | INFO     | corecount: 4
[2026-05-05 05:05:31] 2026-05-05 03:04:53,039 | INFO     | event service: False
[2026-05-05 05:05:31] 2026-05-05 03:04:53,039 | INFO     | sizes: {0: 2270492, 1: 2272321, 11: 2272321, 12876: 2303120, 12878: 2312334}
[2026-05-05 05:05:31] 2026-05-05 03:04:53,039 | INFO     | --------------------------------------------------
[2026-05-05 05:05:31] 2026-05-05 03:04:53,039 | INFO     | 
[2026-05-05 05:05:31] 2026-05-05 03:04:53,040 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot88/slots/0
[2026-05-05 05:05:31] 2026-05-05 03:04:53,084 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,084 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,085 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,085 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,085 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,085 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,085 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,085 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,085 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,085 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,085 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,086 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,086 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,086 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,086 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,086 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,086 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,086 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-05 05:05:31] 2026-05-05 03:04:53,087 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,087 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-05 05:05:31] 2026-05-05 03:04:53,087 | INFO     | job 7122741195 has completed (purged errors)
[2026-05-05 05:05:31] 2026-05-05 03:04:53,088 | INFO     | overall cleanup function is called
[2026-05-05 05:05:31] 2026-05-05 03:04:53,569 | WARNING  | process 2011840 can no longer be monitored (due to stat problems) - aborting
[2026-05-05 05:05:31] 2026-05-05 03:04:54,095 | INFO     | using path: /var/lib/boinc/var/slot88/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-05 05:05:31] 2026-05-05 03:04:54,099 | INFO     | --- collectZombieJob: --- 10, [2011840]
[2026-05-05 05:05:31] 2026-05-05 03:04:54,100 | INFO     | zombie collector waiting for pid 2011840
[2026-05-05 05:05:31] 2026-05-05 03:04:54,100 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-05 05:05:31] 2026-05-05 03:04:54,100 | INFO     | collected zombie processes
[2026-05-05 05:05:31] 2026-05-05 03:04:54,100 | INFO     | will attempt to kill all subprocesses of pid=2011840
[2026-05-05 05:05:31] 2026-05-05 03:04:56,229 | INFO     | number of running child processes to parent process 2011840: 1
[2026-05-05 05:05:31] 2026-05-05 03:04:56,230 | INFO     | maximum number of monitored processes: 6
[2026-05-05 05:05:31] 2026-05-05 03:04:56,230 | INFO     | aborting job monitoring since job object (job id=7122741195) has expired
[2026-05-05 05:05:31] 2026-05-05 03:04:56,286 | INFO     | process IDs to be killed: [2011840] (in reverse order)
[2026-05-05 05:05:31] 2026-05-05 03:04:56,614 | WARNING  | found no corresponding commands to process id(s)
[2026-05-05 05:05:31] 2026-05-05 03:04:56,614 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-05 05:05:31] 2026-05-05 03:04:56,645 | INFO     | did not find any defunct processes belonging to 2011840
[2026-05-05 05:05:31] 2026-05-05 03:04:56,670 | INFO     | did not find any defunct processes belonging to 2011840
[2026-05-05 05:05:31] 2026-05-05 03:04:56,671 | INFO     | Ready for new job
[2026-05-05 05:05:31] 2026-05-05 03:04:56,673 | INFO     | ***************************************
[2026-05-05 05:05:31] 2026-05-05 03:04:56,673 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-05 05:05:31] 2026-05-05 03:04:56,673 | INFO     | ***************************************
[2026-05-05 05:05:31] 2026-05-05 03:04:56,673 | INFO     | 
[2026-05-05 05:05:31] 2026-05-05 03:04:56,682 | INFO     | architecture information:
[2026-05-05 05:05:31] 2026-05-05 03:04:56,682 | INFO     | executing command: cat /etc/os-release
[2026-05-05 05:05:31] 2026-05-05 03:04:56,709 | INFO     | cat /etc/os-release:
[2026-05-05 05:05:31] NAME="CentOS Linux"
[2026-05-05 05:05:31] VERSION="7 (Core)"
[2026-05-05 05:05:31] ID="centos"
[2026-05-05 05:05:31] ID_LIKE="rhel fedora"
[2026-05-05 05:05:31] VERSION_ID="7"
[2026-05-05 05:05:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-05 05:05:31] ANSI_COLOR="0;31"
[2026-05-05 05:05:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-05 05:05:31] HOME_URL="https://www.centos.org/"
[2026-05-05 05:05:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-05 05:05:31] 
[2026-05-05 05:05:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-05 05:05:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-05 05:05:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-05 05:05:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-05 05:05:31] 
[2026-05-05 05:05:31] 2026-05-05 03:04:56,709 | INFO     | ***************************************
[2026-05-05 05:05:31] 2026-05-05 03:04:57,212 | INFO     | executing command: df -mP /var/lib/boinc/var/slot88/slots/0
[2026-05-05 05:05:31] 2026-05-05 03:04:57,239 | INFO     | sufficient remaining disk space (255004246016 B)
[2026-05-05 05:05:31] 2026-05-05 03:04:57,239 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-05 05:05:31] 2026-05-05 03:04:57,240 | INFO     | current server update state: UPDATING_FINAL
[2026-05-05 05:05:31] 2026-05-05 03:04:57,240 | INFO     | update_server=False
[2026-05-05 05:05:31] 2026-05-05 03:04:57,240 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-05 05:05:31] 2026-05-05 03:04:57,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-05 05:05:31] 2026-05-05 03:04:57,241 | INFO     | aborting loop
[2026-05-05 05:05:31] 2026-05-05 03:04:57,758 | INFO     | all data control threads have been joined
[2026-05-05 05:05:31] 2026-05-05 03:04:57,960 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-05 05:05:31] 2026-05-05 03:04:57,970 | INFO     | all payload control threads have been joined
[2026-05-05 05:05:31] 2026-05-05 03:04:58,101 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-05 05:05:31] 2026-05-05 03:04:58,245 | INFO     | [job] retrieve thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:04:58,246 | INFO     | [job] job monitor thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:04:58,471 | INFO     | all job control threads have been joined
[2026-05-05 05:05:31] 2026-05-05 03:04:58,606 | INFO     | [data] copytool_in thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:04:58,636 | INFO     | [payload] validate_post thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:04:58,760 | INFO     | [data] control thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:04:58,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-05 05:05:31] 2026-05-05 03:04:58,950 | INFO     | [job] create_data_payload thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:04:58,966 | INFO     | [job] queue monitor thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:04:58,978 | INFO     | [payload] control thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:04:58,999 | INFO     | [payload] validate_pre thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:04:59,400 | INFO     | [payload] failed_post thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:04:59,463 | INFO     | [job] validate thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:04:59,476 | INFO     | [job] control thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:04:59,638 | INFO     | [payload] execute_payloads thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:05:00,106 | INFO     | [data] copytool_out thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:05:02,803 | INFO     | [data] queue_monitor thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:05:07,356 | INFO     | job.realtimelogging is not enabled
[2026-05-05 05:05:31] 2026-05-05 03:05:08,363 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-05 05:05:31] 2026-05-05 03:05:24,688 | INFO     | [monitor] cgroup control has ended
[2026-05-05 05:05:31] 2026-05-05 03:05:25,786 | INFO     | PID=2005965 has CPU usage=15.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-05-05 05:05:31] 2026-05-05 03:05:25,787 | INFO     | .. there are 22 such processes running
[2026-05-05 05:05:31] 2026-05-05 03:05:25,788 | INFO     | found 0 job(s) in 20 queues
[2026-05-05 05:05:31] 2026-05-05 03:05:25,789 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-05 05:05:31] 2026-05-05 03:05:25,789 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-05 05:05:31] 2026-05-05 03:05:26,140 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23174194468672)>', '<ExcThread(monitor, started 23173890291456)>']
[2026-05-05 05:05:31] 2026-05-05 03:05:26,794 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-05 05:05:31] 2026-05-05 03:05:26,794 | INFO     | [monitor] control thread has ended
[2026-05-05 05:05:31] 2026-05-05 03:05:31,165 | INFO     | all workflow threads have been joined
[2026-05-05 05:05:31] 2026-05-05 03:05:31,166 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-05 05:05:31] 2026-05-05 03:05:31,166 | INFO     | traces error code: 0
[2026-05-05 05:05:31] 2026-05-05 03:05:31,166 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-05 05:05:31] 2026-05-05 03:05:31,325 [wrapper] ==== pilot stdout END ====
[2026-05-05 05:05:31] 2026-05-05 03:05:31,332 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-05 05:05:31] 2026-05-05 03:05:31,336 [wrapper] pilotpid: 2005965
[2026-05-05 05:05:31] 2026-05-05 03:05:31,339 [wrapper] Pilot exit status: 0
[2026-05-05 05:05:31] 2026-05-05 03:05:31,357 [wrapper] pandaids: 7122741195
[2026-05-05 05:05:31] 2026-05-05 03:05:31,589 [wrapper] cleanup supervisor_pilot 2610853 2005966
[2026-05-05 05:05:31] 2026-05-05 03:05:31,594 [wrapper] Test setup, not cleaning
[2026-05-05 05:05:31] 2026-05-05 03:05:31,598 [wrapper] apfmon messages muted
[2026-05-05 05:05:31] 2026-05-05 03:05:31,602 [wrapper] ==== wrapper stdout END ====
[2026-05-05 05:05:31] 2026-05-05 03:05:31,605 [wrapper] ==== wrapper stderr END ====
[2026-05-05 05:05:31]  *** Error codes and diagnostics ***
[2026-05-05 05:05:31]     "exeErrorCode": 0,
[2026-05-05 05:05:31]     "pilotErrorCode": 0,
[2026-05-05 05:05:31]  *** Listing of results directory ***
[2026-05-05 05:05:31] total 415908
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc    683926 May  1 21:08 pilot3.tar.gz
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc      5631 May  1 21:08 queuedata.json
[2026-05-05 05:05:31] -rwx------. 1 boinc boinc     36322 May  1 21:09 runpilot2-wrapper.sh
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc       100 May  5 01:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-05 05:05:31] -rwxr-xr-x. 1 boinc boinc      7986 May  5 01:29 run_atlas
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc       105 May  5 01:29 job.xml
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc      6540 May  5 01:29 init_data.xml
[2026-05-05 05:05:31] -rw-r--r--. 2 boinc boinc 221764136 May  5 01:29 EVNT.48629115._000210.pool.root.1
[2026-05-05 05:05:31] -rw-r--r--. 2 boinc boinc     15667 May  5 01:29 start_atlas.sh
[2026-05-05 05:05:31] drwxrwx--x. 2 boinc boinc      4096 May  5 01:29 shared
[2026-05-05 05:05:31] -rw-r--r--. 2 boinc boinc    697443 May  5 01:29 input.tar.gz
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc         0 May  5 01:29 boinc_lockfile
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc      2627 May  5 01:29 pandaJob.out
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc   1002597 May  5 01:29 agis_schedconf.cvmfs.json
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc       439 May  5 01:30 workernode_map.json
[2026-05-05 05:05:31] drwx------. 5 boinc boinc      4096 May  5 01:30 pilot3
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc 196953602 May  5 05:04 HITS.49645815._024232.pool.root.1
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc       487 May  5 05:04 boinc_task_state.xml
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc      1031 May  5 05:04 memory_monitor_summary.json
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc   1505918 May  5 05:04 agis_ddmendpoints.agis.ALL.json
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc    325837 May  5 05:04 log.49645815._024232.job.log.tgz.1
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc      6376 May  5 05:04 heartbeat_new.json
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc      6267 May  5 05:04 heartbeat.json
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc      8192 May  5 05:05 boinc_mmap_file
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc        27 May  5 05:05 wrapper_checkpoint.txt
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc        95 May  5 05:05 pilot_heartbeat.json
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc      4906 May  5 05:05 pilotlog.txt
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc   1195559 May  5 05:05 log.49645815._024232.job.log.1
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc       357 May  5 05:05 output.list
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc       410 May  5 05:05 runtime_log
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc   1536000 May  5 05:05 result.tar.gz
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc      8828 May  5 05:05 runtime_log.err
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc       666 May  5 05:05 fa6c1dfa7efc.diag
[2026-05-05 05:05:31] -rw-r--r--. 1 boinc boinc     21037 May  5 05:05 stderr.txt
[2026-05-05 05:05:31] HITS file was successfully produced:
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc 196953602 May  5 05:04 shared/HITS.pool.root.1
[2026-05-05 05:05:31]  *** Contents of shared directory: ***
[2026-05-05 05:05:31] total 411116
[2026-05-05 05:05:31] -rw-r--r--. 2 boinc boinc 221764136 May  5 01:29 ATLAS.root_0
[2026-05-05 05:05:31] -rw-r--r--. 2 boinc boinc     15667 May  5 01:29 start_atlas.sh
[2026-05-05 05:05:31] -rw-r--r--. 2 boinc boinc    697443 May  5 01:29 input.tar.gz
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc 196953602 May  5 05:04 HITS.pool.root.1
[2026-05-05 05:05:31] -rw-------. 1 boinc boinc   1536000 May  5 05:05 result.tar.gz
05:06:23 (2001546): run_atlas exited; CPU time 50068.502977
05:06:23 (2001546): called boinc_finish(0)

</stderr_txt>
]]>

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