Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
20:47:15 (3422660): wrapper (7.7.26015): starting
20:47:15 (3422660): wrapper: running run_atlas (--nthreads 4)
[2026-05-01 20:47:15] Arguments: --nthreads 4
[2026-05-01 20:47:15] Threads: 4
[2026-05-01 20:47:15] Checking for CVMFS
[2026-05-01 20:47:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-01 20:47:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-01 20:47:15] Running cvmfs_config stat atlas.cern.ch
[2026-05-01 20:47:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-01 20:47:15] 2.13.3.0 10850 89391 100620 159106 3 1 2870026 4096001 0 130560 0 18137285 99.920 3767000 1531 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
[2026-05-01 20:47:15] CVMFS is ok
[2026-05-01 20:47:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-01 20:47:15] Small home clusters do not require a local http proxy but it is suggested if
[2026-05-01 20:47:15] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-05-01 20:47:15] Further information can be found at the LHC@home message board.
[2026-05-01 20:47:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 20:47:15] Checking for apptainer binary...
[2026-05-01 20:47:15] apptainer is not installed, using version from CVMFS
[2026-05-01 20:47:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 20:47:16] aplysia.rechenkraft.net
[2026-05-01 20:47:16] apptainer works
[2026-05-01 20:47:16] Set ATHENA_PROC_NUMBER=4
[2026-05-01 20:47:16] Set ATHENA_CORE_NUMBER=4
[2026-05-01 20:47:16] Starting ATLAS job with PandaID=7120580749
[2026-05-01 20:47:16] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 22:45:59]  *** The last 200 lines of the pilot log: ***
[2026-05-01 22:45:59] 2026-05-01 22:45:26,785 | INFO     | preparing for final server update for job 7120580749 in state='finished'
[2026-05-01 22:45:59] 2026-05-01 22:45:26,785 | INFO     | reading metadata from: /var/lib/boinc-client/slots/0/PanDA_Pilot-7120580749/jobReport.json
[2026-05-01 22:45:59] 2026-05-01 22:45:26,786 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/0/workernode_map.json
[2026-05-01 22:45:59] 2026-05-01 22:45:26,786 | INFO     | this job has now completed (state=finished)
[2026-05-01 22:45:59] 2026-05-01 22:45:26,786 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-01 22:45:59] 2026-05-01 22:45:26,786 | INFO     | log transfer has been attempted: DONE
[2026-05-01 22:45:59] 2026-05-01 22:45:26,786 | INFO     | job 7120580749 has finished - writing final server update
[2026-05-01 22:45:59] 2026-05-01 22:45:26,786 | INFO     | total number of processed events: 400 (read)
[2026-05-01 22:45:59] 2026-05-01 22:45:26,809 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-7120580749/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 22:45:59] 2026-05-01 22:45:26,810 | INFO     | extracted standard info from prmon json
[2026-05-01 22:45:59] 2026-05-01 22:45:26,810 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 22:45:59] 2026-05-01 22:45:26,811 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 22:45:59] 2026-05-01 22:45:26,811 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 22:45:59] 2026-05-01 22:45:26,813 | INFO     | fitting pss+swap vs Time
[2026-05-01 22:45:59] 2026-05-01 22:45:26,813 | INFO     | sum of square deviations: 483971865.0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,814 | INFO     | sum of deviations: -18536786597.5
[2026-05-01 22:45:59] 2026-05-01 22:45:26,814 | INFO     | mean x (centered): 0.0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,814 | INFO     | mean y: 2454639.629310345
[2026-05-01 22:45:59] 2026-05-01 22:45:26,814 | INFO     | intersect: 2454639.629310345
[2026-05-01 22:45:59] 2026-05-01 22:45:26,814 | INFO     | chi2: 1.360397408656295
[2026-05-01 22:45:59] 2026-05-01 22:45:26,814 | INFO     | sum of square deviations: 424045160.0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,815 | INFO     | sum of deviations: -17358059045.0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,815 | INFO     | mean x (centered): 0.0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,815 | INFO     | mean y: 2457641.90990991
[2026-05-01 22:45:59] 2026-05-01 22:45:26,815 | INFO     | intersect: 2457641.90990991
[2026-05-01 22:45:59] 2026-05-01 22:45:26,815 | INFO     | chi2: 1.3509425863884055
[2026-05-01 22:45:59] 2026-05-01 22:45:26,815 | INFO     | current chi2=1.3509425863884055 (change=0.6950044308911494 %)
[2026-05-01 22:45:59] 2026-05-01 22:45:26,815 | INFO     | right removable region: 110
[2026-05-01 22:45:59] 2026-05-01 22:45:26,815 | INFO     | sum of square deviations: 424045160.0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,815 | INFO     | sum of deviations: -27177599620.0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,816 | INFO     | mean x (centered): 0.0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,816 | INFO     | mean y: 2475721.414414414
[2026-05-01 22:45:59] 2026-05-01 22:45:26,816 | INFO     | intersect: 2475721.414414414
[2026-05-01 22:45:59] 2026-05-01 22:45:26,816 | INFO     | chi2: 0.266408091628849
[2026-05-01 22:45:59] 2026-05-01 22:45:26,816 | INFO     | current chi2=0.266408091628849 (change=80.41689215712428 %)
[2026-05-01 22:45:59] 2026-05-01 22:45:26,816 | INFO     | sum of square deviations: 369281342.5
[2026-05-01 22:45:59] 2026-05-01 22:45:26,816 | INFO     | sum of deviations: -22200378826.5
[2026-05-01 22:45:59] 2026-05-01 22:45:26,816 | INFO     | mean x (centered): 0.0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,816 | INFO     | mean y: 2461842.1603773586
[2026-05-01 22:45:59] 2026-05-01 22:45:26,816 | INFO     | intersect: 2461842.1603773586
[2026-05-01 22:45:59] 2026-05-01 22:45:26,817 | INFO     | chi2: 0.2596532060324431
[2026-05-01 22:45:59] 2026-05-01 22:45:26,817 | INFO     | current chi2=0.2596532060324431 (change=2.5355407019005254 %)
[2026-05-01 22:45:59] 2026-05-01 22:45:26,817 | INFO     | left removable region: 10
[2026-05-01 22:45:59] 2026-05-01 22:45:26,817 | INFO     | sum of square deviations: 310052325.0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,817 | INFO     | sum of deviations: -20764844293.5
[2026-05-01 22:45:59] 2026-05-01 22:45:26,817 | INFO     | mean x (centered): 0.0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,817 | INFO     | mean y: 2466283.91
[2026-05-01 22:45:59] 2026-05-01 22:45:26,817 | INFO     | intersect: 2466283.91
[2026-05-01 22:45:59] 2026-05-01 22:45:26,817 | INFO     | chi2: 0.2452451644009998
[2026-05-01 22:45:59] 2026-05-01 22:45:26,817 | INFO     | current memory leak: -66.97 B/s (using 100 data points, chi2=0.25)
[2026-05-01 22:45:59] 2026-05-01 22:45:26,818 | INFO     | could have reported an average CPU frequency of 4081 MHz (7 samples)
[2026-05-01 22:45:59] 2026-05-01 22:45:26,818 | INFO     | ..............................
[2026-05-01 22:45:59] 2026-05-01 22:45:26,818 | INFO     | . Timing measurements:
[2026-05-01 22:45:59] 2026-05-01 22:45:26,818 | INFO     | . get job = 0 s
[2026-05-01 22:45:59] 2026-05-01 22:45:26,818 | INFO     | . initial setup = 4 s
[2026-05-01 22:45:59] 2026-05-01 22:45:26,818 | INFO     | . payload setup = 7 s
[2026-05-01 22:45:59] 2026-05-01 22:45:26,818 | INFO     | . stage-in = 0 s
[2026-05-01 22:45:59] 2026-05-01 22:45:26,818 | INFO     | . payload execution = 7053 s
[2026-05-01 22:45:59] 2026-05-01 22:45:26,818 | INFO     | . stage-out = 0 s
[2026-05-01 22:45:59] 2026-05-01 22:45:26,818 | INFO     | . log creation = 0 s
[2026-05-01 22:45:59] 2026-05-01 22:45:26,818 | INFO     | ..............................
[2026-05-01 22:45:59] 2026-05-01 22:45:26,903 | INFO     | 
[2026-05-01 22:45:59] 2026-05-01 22:45:26,904 | INFO     | job summary report
[2026-05-01 22:45:59] 2026-05-01 22:45:26,905 | INFO     | --------------------------------------------------
[2026-05-01 22:45:59] 2026-05-01 22:45:26,905 | INFO     | PanDA job id: 7120580749
[2026-05-01 22:45:59] 2026-05-01 22:45:26,905 | INFO     | task id: 49718416
[2026-05-01 22:45:59] 2026-05-01 22:45:26,905 | INFO     | errors: (none)
[2026-05-01 22:45:59] 2026-05-01 22:45:26,905 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 22:45:59] 2026-05-01 22:45:26,906 | INFO     | pilot state: finished 
[2026-05-01 22:45:59] 2026-05-01 22:45:26,906 | INFO     | transexitcode: 0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,906 | INFO     | exeerrorcode: 0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,906 | INFO     | exeerrordiag: 
[2026-05-01 22:45:59] 2026-05-01 22:45:26,907 | INFO     | exitcode: 0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,907 | INFO     | exitmsg: OK
[2026-05-01 22:45:59] 2026-05-01 22:45:26,907 | INFO     | cpuconsumptiontime: 27309 s
[2026-05-01 22:45:59] 2026-05-01 22:45:26,907 | INFO     | nevents: 400
[2026-05-01 22:45:59] 2026-05-01 22:45:26,907 | INFO     | neventsw: 0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,907 | INFO     | pid: 3431060
[2026-05-01 22:45:59] 2026-05-01 22:45:26,908 | INFO     | pgrp: 3431060
[2026-05-01 22:45:59] 2026-05-01 22:45:26,909 | INFO     | corecount: 4
[2026-05-01 22:45:59] 2026-05-01 22:45:26,909 | INFO     | event service: False
[2026-05-01 22:45:59] 2026-05-01 22:45:26,910 | INFO     | sizes: {0: 2275561, 1: 2277135, 11: 2277163, 7064: 2304588, 7065: 2313656, 7067: 2313794}
[2026-05-01 22:45:59] 2026-05-01 22:45:26,910 | INFO     | --------------------------------------------------
[2026-05-01 22:45:59] 2026-05-01 22:45:26,911 | INFO     | 
[2026-05-01 22:45:59] 2026-05-01 22:45:26,911 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-05-01 22:45:59] 2026-05-01 22:45:26,956 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,957 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,957 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,957 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,957 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,957 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,957 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,958 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,958 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,958 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,958 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,958 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,958 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,958 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,958 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,959 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,959 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,959 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 22:45:59] 2026-05-01 22:45:26,959 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,959 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 22:45:59] 2026-05-01 22:45:26,959 | INFO     | job 7120580749 has completed (purged errors)
[2026-05-01 22:45:59] 2026-05-01 22:45:26,959 | INFO     | overall cleanup function is called
[2026-05-01 22:45:59] 2026-05-01 22:45:26,991 | WARNING  | process 3431060 can no longer be monitored (due to stat problems) - aborting
[2026-05-01 22:45:59] 2026-05-01 22:45:27,032 | INFO     | using path: /var/lib/boinc-client/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 22:45:59] 2026-05-01 22:45:27,072 | INFO     | number of running child processes to parent process 3431060: 1
[2026-05-01 22:45:59] 2026-05-01 22:45:27,072 | INFO     | maximum number of monitored processes: 6
[2026-05-01 22:45:59] 2026-05-01 22:45:27,072 | INFO     | aborting job monitoring since job object (job id=7120580749) has expired
[2026-05-01 22:45:59] 2026-05-01 22:45:27,970 | INFO     | --- collectZombieJob: --- 10, [3431060]
[2026-05-01 22:45:59] 2026-05-01 22:45:27,971 | INFO     | zombie collector waiting for pid 3431060
[2026-05-01 22:45:59] 2026-05-01 22:45:27,971 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 22:45:59] 2026-05-01 22:45:27,971 | INFO     | collected zombie processes
[2026-05-01 22:45:59] 2026-05-01 22:45:27,971 | INFO     | will attempt to kill all subprocesses of pid=3431060
[2026-05-01 22:45:59] 2026-05-01 22:45:28,050 | INFO     | process IDs to be killed: [3431060] (in reverse order)
[2026-05-01 22:45:59] 2026-05-01 22:45:28,094 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 22:45:59] 2026-05-01 22:45:28,094 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 22:45:59] 2026-05-01 22:45:28,097 | INFO     | did not find any defunct processes belonging to 3431060
[2026-05-01 22:45:59] 2026-05-01 22:45:28,100 | INFO     | did not find any defunct processes belonging to 3431060
[2026-05-01 22:45:59] 2026-05-01 22:45:28,100 | INFO     | Ready for new job
[2026-05-01 22:45:59] 2026-05-01 22:45:28,101 | INFO     | ***************************************
[2026-05-01 22:45:59] 2026-05-01 22:45:28,101 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 22:45:59] 2026-05-01 22:45:28,102 | INFO     | ***************************************
[2026-05-01 22:45:59] 2026-05-01 22:45:28,102 | INFO     | 
[2026-05-01 22:45:59] 2026-05-01 22:45:28,119 | INFO     | architecture information:
[2026-05-01 22:45:59] 2026-05-01 22:45:28,120 | INFO     | executing command: cat /etc/os-release
[2026-05-01 22:45:59] 2026-05-01 22:45:28,139 | INFO     | cat /etc/os-release:
[2026-05-01 22:45:59] NAME="CentOS Linux"
[2026-05-01 22:45:59] VERSION="7 (Core)"
[2026-05-01 22:45:59] ID="centos"
[2026-05-01 22:45:59] ID_LIKE="rhel fedora"
[2026-05-01 22:45:59] VERSION_ID="7"
[2026-05-01 22:45:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 22:45:59] ANSI_COLOR="0;31"
[2026-05-01 22:45:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 22:45:59] HOME_URL="https://www.centos.org/"
[2026-05-01 22:45:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 22:45:59] 
[2026-05-01 22:45:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 22:45:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 22:45:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 22:45:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 22:45:59] 
[2026-05-01 22:45:59] 2026-05-01 22:45:28,139 | INFO     | ***************************************
[2026-05-01 22:45:59] 2026-05-01 22:45:28,643 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-05-01 22:45:59] 2026-05-01 22:45:28,680 | INFO     | sufficient remaining disk space (183261724672 B)
[2026-05-01 22:45:59] 2026-05-01 22:45:28,680 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 22:45:59] 2026-05-01 22:45:28,681 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 22:45:59] 2026-05-01 22:45:28,681 | INFO     | update_server=False
[2026-05-01 22:45:59] 2026-05-01 22:45:28,681 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 22:45:59] 2026-05-01 22:45:28,681 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 22:45:59] 2026-05-01 22:45:28,681 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 22:45:59] 2026-05-01 22:45:28,681 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 22:45:59] 2026-05-01 22:45:28,682 | INFO     | aborting loop
[2026-05-01 22:45:59] 2026-05-01 22:45:28,802 | INFO     | all payload control threads have been joined
[2026-05-01 22:45:59] 2026-05-01 22:45:28,810 | INFO     | all data control threads have been joined
[2026-05-01 22:45:59] 2026-05-01 22:45:29,634 | INFO     | all job control threads have been joined
[2026-05-01 22:45:59] 2026-05-01 22:45:29,682 | INFO     | [job] retrieve thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:29,686 | INFO     | [job] queue monitor thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:29,687 | INFO     | [job] job monitor thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:29,806 | INFO     | [payload] control thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:29,814 | INFO     | [data] control thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:29,831 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:29,946 | INFO     | [data] copytool_in thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:30,386 | INFO     | [payload] failed_post thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:30,638 | INFO     | [job] control thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:30,686 | INFO     | [data] copytool_out thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:30,814 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:30,862 | INFO     | [job] validate thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:31,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 22:45:59] 2026-05-01 22:45:31,059 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:31,094 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:31,281 | INFO     | [payload] validate_post thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:35,038 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 22:45:59] 2026-05-01 22:45:39,976 | INFO     | [monitor] cgroup control has ended
[2026-05-01 22:45:59] 2026-05-01 22:45:41,859 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140580986881856)>', '<ExcThread(monitor, started 140580545865472)>']
[2026-05-01 22:45:59] 2026-05-01 22:45:46,882 | INFO     | all workflow threads have been joined
[2026-05-01 22:45:59] 2026-05-01 22:45:46,883 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 22:45:59] 2026-05-01 22:45:46,883 | INFO     | traces error code: 0
[2026-05-01 22:45:59] 2026-05-01 22:45:46,883 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 22:45:59] 2026-05-01 22:45:58,775 | INFO     | PID=3426484 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-01 22:45:59] 2026-05-01 22:45:58,776 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 22:45:59] 2026-05-01 22:45:58,776 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 22:45:59] 2026-05-01 22:45:58,776 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 22:45:59] 2026-05-01 22:45:58,776 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 22:45:59] 2026-05-01 22:45:58,776 | CRITICAL | thread 'MainThread' is not alive
[2026-05-01 22:45:59] 2026-05-01 22:45:58,776 | INFO     | [monitor] control thread has ended
[2026-05-01 22:45:59] 2026-05-01 22:45:59,008 [wrapper] ==== pilot stdout END ====
[2026-05-01 22:45:59] 2026-05-01 22:45:59,011 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 22:45:59] 2026-05-01 22:45:59,013 [wrapper] pilotpid: 3426484
[2026-05-01 22:45:59] 2026-05-01 22:45:59,016 [wrapper] Pilot exit status: 0
[2026-05-01 22:45:59] 2026-05-01 22:45:59,025 [wrapper] pandaids: 7120580749
[2026-05-01 22:45:59] 2026-05-01 22:45:59,049 [wrapper] cleanup supervisor_pilot 3467574 3426485
[2026-05-01 22:45:59] 2026-05-01 22:45:59,052 [wrapper] Test setup, not cleaning
[2026-05-01 22:45:59] 2026-05-01 22:45:59,054 [wrapper] apfmon messages muted
[2026-05-01 22:45:59] 2026-05-01 22:45:59,059 [wrapper] ==== wrapper stdout END ====
[2026-05-01 22:45:59] 2026-05-01 22:45:59,062 [wrapper] ==== wrapper stderr END ====
[2026-05-01 22:45:59]  *** Error codes and diagnostics ***
[2026-05-01 22:45:59]     "exeErrorCode": 0,
[2026-05-01 22:45:59]     "pilotErrorCode": 0,
[2026-05-01 22:45:59]  *** Listing of results directory ***
[2026-05-01 22:45:59] total 628080
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc    683926 May  1 15:14 pilot3.tar.gz
[2026-05-01 22:45:59] -rwx------ 1 boinc boinc     36322 May  1 15:16 runpilot2-wrapper.sh
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc      5631 May  1 15:17 queuedata.json
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc       100 May  1 20:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 22:45:59] -rwxr-xr-x 1 boinc boinc      7986 May  1 20:47 run_atlas
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc       105 May  1 20:47 job.xml
[2026-05-01 22:45:59] -rw-r--r-- 2 boinc boinc     15667 May  1 20:47 start_atlas.sh
[2026-05-01 22:45:59] drwxrwx--x 2 boinc boinc      4096 May  1 20:47 shared
[2026-05-01 22:45:59] -rw-r--r-- 2 boinc boinc    697431 May  1 20:47 input.tar.gz
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc      6515 May  1 20:47 init_data.xml
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc         0 May  1 20:47 boinc_setup_complete
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc         0 May  1 20:47 boinc_lockfile
[2026-05-01 22:45:59] -rw-r--r-- 2 boinc boinc 447199982 May  1 20:47 EVNT.46373187._000197.pool.root.1
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc      2596 May  1 20:47 pandaJob.out
[2026-05-01 22:45:59] -rw------- 1 boinc boinc   1003006 May  1 20:47 agis_schedconf.cvmfs.json
[2026-05-01 22:45:59] -rw------- 1 boinc boinc   1508687 May  1 20:47 agis_ddmendpoints.agis.ALL.json
[2026-05-01 22:45:59] -rw------- 1 boinc boinc       431 May  1 20:47 workernode_map.json
[2026-05-01 22:45:59] drwx------ 5 boinc boinc      4096 May  1 20:47 pilot3
[2026-05-01 22:45:59] -rw------- 1 boinc boinc 189895473 May  1 22:44 HITS.49718416._020991.pool.root.1
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc       488 May  1 22:45 boinc_task_state.xml
[2026-05-01 22:45:59] -rw------- 1 boinc boinc        95 May  1 22:45 pilot_heartbeat.json
[2026-05-01 22:45:59] -rw------- 1 boinc boinc      1025 May  1 22:45 memory_monitor_summary.json
[2026-05-01 22:45:59] -rw------- 1 boinc boinc    281583 May  1 22:45 log.49718416._020991.job.log.tgz.1
[2026-05-01 22:45:59] -rw------- 1 boinc boinc      6334 May  1 22:45 heartbeat_new.json
[2026-05-01 22:45:59] -rw------- 1 boinc boinc      6225 May  1 22:45 heartbeat.json
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc        27 May  1 22:45 wrapper_checkpoint.txt
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc      8192 May  1 22:45 boinc_mmap_file
[2026-05-01 22:45:59] -rw------- 1 boinc boinc       817 May  1 22:45 pilotlog.txt
[2026-05-01 22:45:59] -rw------- 1 boinc boinc    679276 May  1 22:45 log.49718416._020991.job.log.1
[2026-05-01 22:45:59] -rw------- 1 boinc boinc       357 May  1 22:45 output.list
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc       410 May  1 22:45 runtime_log
[2026-05-01 22:45:59] -rw------- 1 boinc boinc    983040 May  1 22:45 result.tar.gz
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc      8562 May  1 22:45 runtime_log.err
[2026-05-01 22:45:59] -rw------- 1 boinc boinc       661 May  1 22:45 c3db33e6bdc7.diag
[2026-05-01 22:45:59] -rw-r--r-- 1 boinc boinc     21326 May  1 22:45 stderr.txt
[2026-05-01 22:45:59] HITS file was successfully produced:
[2026-05-01 22:45:59] -rw------- 1 boinc boinc 189895473 May  1 22:44 shared/HITS.pool.root.1
[2026-05-01 22:45:59]  *** Contents of shared directory: ***
[2026-05-01 22:45:59] total 623836
[2026-05-01 22:45:59] -rw-r--r-- 2 boinc boinc     15667 May  1 20:47 start_atlas.sh
[2026-05-01 22:45:59] -rw-r--r-- 2 boinc boinc    697431 May  1 20:47 input.tar.gz
[2026-05-01 22:45:59] -rw-r--r-- 2 boinc boinc 447199982 May  1 20:47 ATLAS.root_0
[2026-05-01 22:45:59] -rw------- 1 boinc boinc 189895473 May  1 22:44 HITS.pool.root.1
[2026-05-01 22:45:59] -rw------- 1 boinc boinc    983040 May  1 22:45 result.tar.gz
22:46:00 (3422660): run_atlas exited; CPU time 27353.916284
22:46:00 (3422660): called boinc_finish(0)

</stderr_txt>
]]>

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