Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:06:53 (4013091): wrapper (7.7.26015): starting
16:06:53 (4013091): wrapper: running run_atlas (--nthreads 12)
[2026-05-02 16:06:53] Arguments: --nthreads 12
[2026-05-02 16:06:53] Threads: 12
[2026-05-02 16:06:53] Checking for CVMFS
[2026-05-02 16:06:53] No cvmfs_config command found, will try listing directly
[2026-05-02 16:06:53] CVMFS is ok
[2026-05-02 16:06:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-02 16:06:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-02 16:06:53] Further information can be found at the LHC@home message board.
[2026-05-02 16:06:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 16:06:53] Checking for apptainer binary...
[2026-05-02 16:06:53] which: no apptainer in ((null))
[2026-05-02 16:06:53] apptainer is not installed, using version from CVMFS
[2026-05-02 16:06:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 16:06:53] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot180/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-05-02 16:06:53] apptainer works
[2026-05-02 16:06:53] Set ATHENA_PROC_NUMBER=12
[2026-05-02 16:06:53] Set ATHENA_CORE_NUMBER=12
[2026-05-02 16:06:53] Starting ATLAS job with PandaID=7120013622
[2026-05-02 16:06:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot180/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 16:38:15]  *** The last 200 lines of the pilot log: ***
[2026-05-02 16:38:15]  filetype=log
[2026-05-02 16:38:15]  guid=1e813530-b667-4439-944e-36f31fa01e89
[2026-05-02 16:38:15]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-02 16:38:15]  is_altstaged=None
[2026-05-02 16:38:15]  is_tar=False
[2026-05-02 16:38:15]  lfn=log.49718416._014780.job.log.tgz.1
[2026-05-02 16:38:15]  mtime=0
[2026-05-02 16:38:15]  protocol_id=None
[2026-05-02 16:38:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-02 16:38:15]  replicas=None
[2026-05-02 16:38:15]  scope=mc23_13p6TeV
[2026-05-02 16:38:15]  status=None
[2026-05-02 16:38:15]  status_code=0
[2026-05-02 16:38:15]  storage_token=
[2026-05-02 16:38:15]  surl=/var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7120013622/log.49718416._014780.job.log.tgz.1
[2026-05-02 16:38:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/2c/log.49718416._014780.job.log.tgz.1
[2026-05-02 16:38:15]  workdir=None
[2026-05-02 16:38:15] ]
[2026-05-02 16:38:15] 2026-05-02 14:37:20,365 | INFO     | transferring file log.49718416._014780.job.log.tgz.1 from /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7120013622/log.49718416._014780.job.log.tgz.1 to /var/lib/
[2026-05-02 16:38:15] 2026-05-02 14:37:20,365 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7120013622/log.49718416._014780.job.log.tgz.1 /var/lib/boinc/var/slot180/slots/1/
[2026-05-02 16:38:15] 2026-05-02 14:37:20,382 | INFO     | adding to output.list: log.49718416._014780.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/95/2c/log.49718416._014780.job.log.tg
[2026-05-02 16:38:15] 2026-05-02 14:37:20,382 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-02 16:38:15] 2026-05-02 14:37:20,383 | INFO     | summary of transferred files:
[2026-05-02 16:38:15] 2026-05-02 14:37:20,383 | INFO     |  -- lfn=log.49718416._014780.job.log.tgz.1, status_code=0, status=transferred
[2026-05-02 16:38:15] 2026-05-02 14:37:20,383 | INFO     | stage-out finished correctly
[2026-05-02 16:38:15] 2026-05-02 14:37:23,437 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-02 16:38:15] 2026-05-02 14:37:23,484 | INFO     | job 7120013622 has state=finished
[2026-05-02 16:38:15] 2026-05-02 14:37:23,484 | INFO     | preparing for final server update for job 7120013622 in state='finished'
[2026-05-02 16:38:15] 2026-05-02 14:37:23,484 | INFO     | reading metadata from: /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7120013622/jobReport.json
[2026-05-02 16:38:15] 2026-05-02 14:37:23,485 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot180/slots/1/workernode_map.json
[2026-05-02 16:38:15] 2026-05-02 14:37:23,486 | INFO     | this job has now completed (state=finished)
[2026-05-02 16:38:15] 2026-05-02 14:37:23,486 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-02 16:38:15] 2026-05-02 14:37:23,486 | INFO     | log transfer has been attempted: DONE
[2026-05-02 16:38:15] 2026-05-02 14:37:23,486 | INFO     | job 7120013622 has finished - writing final server update
[2026-05-02 16:38:15] 2026-05-02 14:37:23,486 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1362834/.job.ad'
[2026-05-02 16:38:15] 2026-05-02 14:37:23,486 | INFO     | total number of processed events: 400 (read)
[2026-05-02 16:38:15] 2026-05-02 14:37:23,503 | INFO     | using path: /var/lib/boinc/var/slot180/slots/1/PanDA_Pilot-7120013622/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 16:38:15] 2026-05-02 14:37:23,504 | INFO     | extracted standard info from prmon json
[2026-05-02 16:38:15] 2026-05-02 14:37:23,504 | INFO     | extracted standard memory fields from prmon json
[2026-05-02 16:38:15] 2026-05-02 14:37:23,504 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-02 16:38:15] 2026-05-02 14:37:23,504 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | fitting pss+swap vs Time
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | sum of square deviations: 3765652.0
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | sum of deviations: -221456962.00000003
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | mean x (centered): 0.0
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | mean y: 2710373.304347826
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | intersect: 2710373.304347826
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | chi2: 0.0026300296390850946
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | current memory leak: -58.81 B/s (using 23 data points, chi2=0.00)
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | could have reported an average CPU frequency of 3593 MHz (5 samples)
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | ..............................
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | . Timing measurements:
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | . get job = 0 s
[2026-05-02 16:38:15] 2026-05-02 14:37:23,505 | INFO     | . initial setup = 4 s
[2026-05-02 16:38:15] 2026-05-02 14:37:23,506 | INFO     | . payload setup = 6 s
[2026-05-02 16:38:15] 2026-05-02 14:37:23,506 | INFO     | . stage-in = 0 s
[2026-05-02 16:38:15] 2026-05-02 14:37:23,506 | INFO     | . payload execution = 1793 s
[2026-05-02 16:38:15] 2026-05-02 14:37:23,506 | INFO     | . stage-out = 0 s
[2026-05-02 16:38:15] 2026-05-02 14:37:23,506 | INFO     | . log creation = 0 s
[2026-05-02 16:38:15] 2026-05-02 14:37:23,506 | INFO     | ..............................
[2026-05-02 16:38:15] 2026-05-02 14:37:23,556 | INFO     | 
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | job summary report
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | --------------------------------------------------
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | PanDA job id: 7120013622
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | task id: 49718416
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | errors: (none)
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | pilot state: finished 
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | transexitcode: 0
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | exeerrorcode: 0
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | exeerrordiag: 
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | exitcode: 0
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | exitmsg: OK
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | cpuconsumptiontime: 18804 s
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | nevents: 400
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | neventsw: 0
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | pid: 4033248
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | pgrp: 4033248
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | corecount: 12
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | event service: False
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | sizes: {0: 2277138, 10: 2277138, 1802: 2302062, 1803: 2311139, 1806: 2311365}
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | --------------------------------------------------
[2026-05-02 16:38:15] 2026-05-02 14:37:23,557 | INFO     | 
[2026-05-02 16:38:15] 2026-05-02 14:37:23,558 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot180/slots/1
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,575 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,576 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,576 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,576 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,576 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,576 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-02 16:38:15] 2026-05-02 14:37:23,576 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,576 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-02 16:38:15] 2026-05-02 14:37:23,576 | INFO     | job 7120013622 has completed (purged errors)
[2026-05-02 16:38:15] 2026-05-02 14:37:23,576 | INFO     | overall cleanup function is called
[2026-05-02 16:38:15] 2026-05-02 14:37:24,583 | INFO     | --- collectZombieJob: --- 10, [4033248]
[2026-05-02 16:38:15] 2026-05-02 14:37:24,583 | INFO     | zombie collector waiting for pid 4033248
[2026-05-02 16:38:15] 2026-05-02 14:37:24,583 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 16:38:15] 2026-05-02 14:37:24,583 | INFO     | collected zombie processes
[2026-05-02 16:38:15] 2026-05-02 14:37:24,583 | INFO     | will attempt to kill all subprocesses of pid=4033248
[2026-05-02 16:38:15] 2026-05-02 14:37:24,880 | INFO     | process IDs to be killed: [4033248] (in reverse order)
[2026-05-02 16:38:15] 2026-05-02 14:37:25,036 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 16:38:15] 2026-05-02 14:37:25,037 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 16:38:15] 2026-05-02 14:37:25,081 | INFO     | did not find any defunct processes belonging to 4033248
[2026-05-02 16:38:15] 2026-05-02 14:37:25,121 | INFO     | did not find any defunct processes belonging to 4033248
[2026-05-02 16:38:15] 2026-05-02 14:37:25,121 | INFO     | Ready for new job
[2026-05-02 16:38:15] 2026-05-02 14:37:25,122 | INFO     | ***************************************
[2026-05-02 16:38:15] 2026-05-02 14:37:25,123 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 16:38:15] 2026-05-02 14:37:25,123 | INFO     | ***************************************
[2026-05-02 16:38:15] 2026-05-02 14:37:25,123 | INFO     | 
[2026-05-02 16:38:15] 2026-05-02 14:37:25,130 | INFO     | architecture information:
[2026-05-02 16:38:15] 2026-05-02 14:37:25,131 | INFO     | executing command: cat /etc/os-release
[2026-05-02 16:38:15] 2026-05-02 14:37:25,148 | INFO     | cat /etc/os-release:
[2026-05-02 16:38:15] NAME="CentOS Linux"
[2026-05-02 16:38:15] VERSION="7 (Core)"
[2026-05-02 16:38:15] ID="centos"
[2026-05-02 16:38:15] ID_LIKE="rhel fedora"
[2026-05-02 16:38:15] VERSION_ID="7"
[2026-05-02 16:38:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 16:38:15] ANSI_COLOR="0;31"
[2026-05-02 16:38:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 16:38:15] HOME_URL="https://www.centos.org/"
[2026-05-02 16:38:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 16:38:15] 
[2026-05-02 16:38:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 16:38:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 16:38:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 16:38:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 16:38:15] 
[2026-05-02 16:38:15] 2026-05-02 14:37:25,148 | INFO     | ***************************************
[2026-05-02 16:38:15] 2026-05-02 14:37:25,266 | WARNING  | process 4033248 can no longer be monitored (due to stat problems) - aborting
[2026-05-02 16:38:15] 2026-05-02 14:37:25,540 | INFO     | using path: /var/lib/boinc/var/slot180/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 16:38:15] 2026-05-02 14:37:25,650 | INFO     | executing command: df -mP /var/lib/boinc/var/slot180/slots/1
[2026-05-02 16:38:15] 2026-05-02 14:37:25,665 | INFO     | sufficient remaining disk space (165476827136 B)
[2026-05-02 16:38:15] 2026-05-02 14:37:25,666 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 16:38:15] 2026-05-02 14:37:25,666 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 16:38:15] 2026-05-02 14:37:25,666 | INFO     | update_server=False
[2026-05-02 16:38:15] 2026-05-02 14:37:25,666 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 16:38:15] 2026-05-02 14:37:25,666 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 16:38:15] 2026-05-02 14:37:25,865 | INFO     | number of running child processes to parent process 4033248: 1
[2026-05-02 16:38:15] 2026-05-02 14:37:25,868 | INFO     | maximum number of monitored processes: 6
[2026-05-02 16:38:15] 2026-05-02 14:37:25,868 | INFO     | aborting job monitoring since job object (job id=7120013622) has expired
[2026-05-02 16:38:15] 2026-05-02 14:37:25,868 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 16:38:15] 2026-05-02 14:37:25,868 | INFO     | will abort loop
[2026-05-02 16:38:15] 2026-05-02 14:37:25,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 16:38:15] 2026-05-02 14:37:26,191 | INFO     | all data control threads have been joined
[2026-05-02 16:38:15] 2026-05-02 14:37:26,383 | INFO     | all payload control threads have been joined
[2026-05-02 16:38:15] 2026-05-02 14:37:26,671 | INFO     | [job] retrieve thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:26,780 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:26,873 | INFO     | [job] job monitor thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:26,885 | INFO     | [payload] failed_post thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:26,985 | INFO     | all job control threads have been joined
[2026-05-02 16:38:15] 2026-05-02 14:37:27,196 | INFO     | [data] control thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:27,261 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:27,308 | INFO     | [payload] validate_post thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:27,364 | INFO     | [job] validate thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:27,388 | INFO     | [payload] control thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:27,572 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:27,622 | INFO     | [data] copytool_in thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:27,944 | INFO     | [data] copytool_out thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:27,990 | INFO     | [job] control thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:28,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 16:38:15] 2026-05-02 14:37:29,572 | INFO     | [job] queue monitor thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:29,676 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:35,764 | INFO     | job.realtimelogging is not enabled
[2026-05-02 16:38:15] 2026-05-02 14:37:36,769 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 16:38:15] 2026-05-02 14:37:56,564 | INFO     | PID=4021821 has CPU usage=6.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-02 16:38:15] 2026-05-02 14:37:56,564 | INFO     | .. there are 16 such processes running
[2026-05-02 16:38:15] 2026-05-02 14:37:56,565 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 16:38:15] 2026-05-02 14:37:56,566 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 16:38:15] 2026-05-02 14:37:56,566 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 16:38:15] 2026-05-02 14:38:08,367 | INFO     | [monitor] cgroup control has ended
[2026-05-02 16:38:15] 2026-05-02 14:38:10,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23108227307328)>', '<ExcThread(monitor, started 23107920176896)>']
[2026-05-02 16:38:15] 2026-05-02 14:38:10,632 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 16:38:15] 2026-05-02 14:38:10,632 | INFO     | [monitor] control thread has ended
[2026-05-02 16:38:15] 2026-05-02 14:38:15,317 | INFO     | all workflow threads have been joined
[2026-05-02 16:38:15] 2026-05-02 14:38:15,317 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 16:38:15] 2026-05-02 14:38:15,317 | INFO     | traces error code: 0
[2026-05-02 16:38:15] 2026-05-02 14:38:15,317 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 16:38:15] 2026-05-02 14:38:15,443 [wrapper] ==== pilot stdout END ====
[2026-05-02 16:38:15] 2026-05-02 14:38:15,446 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 16:38:15] 2026-05-02 14:38:15,448 [wrapper] pilotpid: 4021821
[2026-05-02 16:38:15] 2026-05-02 14:38:15,451 [wrapper] Pilot exit status: 0
[2026-05-02 16:38:15] 2026-05-02 14:38:15,459 [wrapper] pandaids: 7120013622
[2026-05-02 16:38:15] 2026-05-02 14:38:15,565 [wrapper] cleanup supervisor_pilot  109480 4021822
[2026-05-02 16:38:15] 2026-05-02 14:38:15,568 [wrapper] Test setup, not cleaning
[2026-05-02 16:38:15] 2026-05-02 14:38:15,571 [wrapper] apfmon messages muted
[2026-05-02 16:38:15] 2026-05-02 14:38:15,573 [wrapper] ==== wrapper stdout END ====
[2026-05-02 16:38:15] 2026-05-02 14:38:15,575 [wrapper] ==== wrapper stderr END ====
[2026-05-02 16:38:15]  *** Error codes and diagnostics ***
[2026-05-02 16:38:15]     "exeErrorCode": 0,
[2026-05-02 16:38:15]     "pilotErrorCode": 0,
[2026-05-02 16:38:15]  *** Listing of results directory ***
[2026-05-02 16:38:15] total 626724
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc      5631 May  1 10:43 queuedata.json
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc    683926 May  1 10:43 pilot3.tar.gz
[2026-05-02 16:38:15] -rwx------. 1 boinc boinc     36322 May  1 10:43 runpilot2-wrapper.sh
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc       100 May  2 16:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 16:38:15] -rwxr-xr-x. 1 boinc boinc      7986 May  2 16:06 run_atlas
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc       105 May  2 16:06 job.xml
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc      6631 May  2 16:06 init_data.xml
[2026-05-02 16:38:15] -rw-r--r--. 2 boinc boinc 440233560 May  2 16:06 EVNT.46373187._000073.pool.root.1
[2026-05-02 16:38:15] -rw-r--r--. 2 boinc boinc     15667 May  2 16:06 start_atlas.sh
[2026-05-02 16:38:15] drwxrwx--x. 2 boinc boinc      4096 May  2 16:06 shared
[2026-05-02 16:38:15] -rw-r--r--. 2 boinc boinc    697426 May  2 16:06 input.tar.gz
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc         0 May  2 16:06 boinc_lockfile
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc      2595 May  2 16:06 pandaJob.out
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc   1002984 May  2 16:07 agis_schedconf.cvmfs.json
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc   1508687 May  2 16:07 agis_ddmendpoints.agis.ALL.json
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc       444 May  2 16:07 workernode_map.json
[2026-05-02 16:38:15] drwx------. 5 boinc boinc      4096 May  2 16:07 pilot3
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc 196257848 May  2 16:36 HITS.49718416._014780.pool.root.1
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc       488 May  2 16:36 boinc_task_state.xml
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc      1028 May  2 16:37 memory_monitor_summary.json
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc    349974 May  2 16:37 log.49718416._014780.job.log.tgz.1
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc      6381 May  2 16:37 heartbeat_new.json
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc      6272 May  2 16:37 heartbeat.json
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc        95 May  2 16:37 pilot_heartbeat.json
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc      8192 May  2 16:37 boinc_mmap_file
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc        27 May  2 16:37 wrapper_checkpoint.txt
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc      5439 May  2 16:38 pilotlog.txt
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc    219410 May  2 16:38 log.49718416._014780.job.log.1
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc       357 May  2 16:38 output.list
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc       410 May  2 16:38 runtime_log
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc    583680 May  2 16:38 result.tar.gz
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc      8846 May  2 16:38 runtime_log.err
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc       661 May  2 16:38 67bfb80e7b45.diag
[2026-05-02 16:38:15] -rw-r--r--. 1 boinc boinc     21103 May  2 16:38 stderr.txt
[2026-05-02 16:38:15] HITS file was successfully produced:
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc 196257848 May  2 16:36 shared/HITS.pool.root.1
[2026-05-02 16:38:15]  *** Contents of shared directory: ***
[2026-05-02 16:38:15] total 622856
[2026-05-02 16:38:15] -rw-r--r--. 2 boinc boinc 440233560 May  2 16:06 ATLAS.root_0
[2026-05-02 16:38:15] -rw-r--r--. 2 boinc boinc     15667 May  2 16:06 start_atlas.sh
[2026-05-02 16:38:15] -rw-r--r--. 2 boinc boinc    697426 May  2 16:06 input.tar.gz
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc 196257848 May  2 16:36 HITS.pool.root.1
[2026-05-02 16:38:15] -rw-------. 1 boinc boinc    583680 May  2 16:38 result.tar.gz
16:38:17 (4013091): run_atlas exited; CPU time 18850.538917
16:38:17 (4013091): called boinc_finish(0)

</stderr_txt>
]]>

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