Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:49:58 (4069438): wrapper (7.7.26015): starting
10:49:58 (4069438): wrapper: running run_atlas (--nthreads 8)
[2026-05-01 10:49:58] Arguments: --nthreads 8
[2026-05-01 10:49:58] Threads: 8
[2026-05-01 10:49:58] Checking for CVMFS
[2026-05-01 10:49:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-01 10:49:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-01 10:49:59] Running cvmfs_config stat atlas.cern.ch
[2026-05-01 10:50:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-01 10:50:01] 2.13.3.0 11845 1496 134884 159098 1 505 27027103 32935937 16878 16776704 0 5348904 99.361 7468562 36099 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-05-01 10:50:01] CVMFS is ok
[2026-05-01 10:50:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-01 10:50:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-01 10:50:01] Further information can be found at the LHC@home message board.
[2026-05-01 10:50:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 10:50:01] Checking for apptainer binary...
[2026-05-01 10:50:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-01 10:50:01] Running /usr/bin/apptainer --version
[2026-05-01 10:50:01] apptainer version 1.4.5-3.el9
[2026-05-01 10:50:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 10:50:02] c6-5-37-2.aglt2.org
[2026-05-01 10:50:02] apptainer works
[2026-05-01 10:50:02] Set ATHENA_PROC_NUMBER=8
[2026-05-01 10:50:02] Set ATHENA_CORE_NUMBER=8
[2026-05-01 10:50:02] Starting ATLAS job with PandaID=7120419613
[2026-05-01 10:50:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 17:28:47]  *** The last 200 lines of the pilot log: ***
[2026-05-01 17:28:47] 2026-05-01 21:28:05,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-01 17:28:47] 2026-05-01 21:28:06,824 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-01 17:28:47] 2026-05-01 21:28:07,664 | INFO     | monitor loop #1569: job 0:7120419613 is in state 'finished'
[2026-05-01 17:28:47] 2026-05-01 21:28:07,664 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-01 17:28:47] 2026-05-01 21:28:09,890 | INFO     | job 7120419613 has state=finished
[2026-05-01 17:28:47] 2026-05-01 21:28:09,890 | INFO     | preparing for final server update for job 7120419613 in state='finished'
[2026-05-01 17:28:47] 2026-05-01 21:28:09,890 | INFO     | reading metadata from: /tmp/boinchome/slots/2/PanDA_Pilot-7120419613/jobReport.json
[2026-05-01 17:28:47] 2026-05-01 21:28:09,893 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/2/workernode_map.json
[2026-05-01 17:28:47] 2026-05-01 21:28:09,893 | INFO     | this job has now completed (state=finished)
[2026-05-01 17:28:47] 2026-05-01 21:28:09,893 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-01 17:28:47] 2026-05-01 21:28:09,893 | INFO     | log transfer has been attempted: DONE
[2026-05-01 17:28:47] 2026-05-01 21:28:09,893 | INFO     | job 7120419613 has finished - writing final server update
[2026-05-01 17:28:47] 2026-05-01 21:28:09,925 | INFO     | total number of processed events: 400 (read)
[2026-05-01 17:28:47] 2026-05-01 21:28:09,992 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7120419613/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 17:28:47] 2026-05-01 21:28:09,993 | INFO     | extracted standard info from prmon json
[2026-05-01 17:28:47] 2026-05-01 21:28:10,029 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 17:28:47] 2026-05-01 21:28:10,029 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 17:28:47] 2026-05-01 21:28:10,029 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 17:28:47] 2026-05-01 21:28:10,051 | INFO     | fitting pss+swap vs Time
[2026-05-01 17:28:47] 2026-05-01 21:28:10,052 | INFO     | sum of square deviations: 18111069869.49221
[2026-05-01 17:28:47] 2026-05-01 21:28:10,059 | INFO     | sum of deviations: 191373323436.98975
[2026-05-01 17:28:47] 2026-05-01 21:28:10,059 | INFO     | mean x (centered): 0.0
[2026-05-01 17:28:47] 2026-05-01 21:28:10,059 | INFO     | mean y: 2469540.2989690723
[2026-05-01 17:28:47] 2026-05-01 21:28:10,060 | INFO     | intersect: 2469540.2989690723
[2026-05-01 17:28:47] 2026-05-01 21:28:10,060 | INFO     | chi2: 4.022707732493926
[2026-05-01 17:28:47] 2026-05-01 21:28:10,061 | INFO     | sum of square deviations: 17419924006.83547
[2026-05-01 17:28:47] 2026-05-01 21:28:10,067 | INFO     | sum of deviations: 212754632117.56677
[2026-05-01 17:28:47] 2026-05-01 21:28:10,067 | INFO     | mean x (centered): 0.0
[2026-05-01 17:28:47] 2026-05-01 21:28:10,067 | INFO     | mean y: 2474201.2506527416
[2026-05-01 17:28:47] 2026-05-01 21:28:10,067 | INFO     | intersect: 2474201.2506527416
[2026-05-01 17:28:47] 2026-05-01 21:28:10,069 | INFO     | chi2: 3.338300067481053
[2026-05-01 17:28:47] 2026-05-01 21:28:10,069 | INFO     | current chi2=3.338300067481053 (change=17.01360651892467 %)
[2026-05-01 17:28:47] 2026-05-01 21:28:10,069 | INFO     | right removable region: 382
[2026-05-01 17:28:47] 2026-05-01 21:28:10,070 | INFO     | sum of square deviations: 17419776021.300182
[2026-05-01 17:28:47] 2026-05-01 21:28:10,072 | INFO     | sum of deviations: 88090418821.6005
[2026-05-01 17:28:47] 2026-05-01 21:28:10,091 | INFO     | mean x (centered): 0.0
[2026-05-01 17:28:47] 2026-05-01 21:28:10,091 | INFO     | mean y: 2492272.4621409923
[2026-05-01 17:28:47] 2026-05-01 21:28:10,091 | INFO     | intersect: 2492272.4621409923
[2026-05-01 17:28:47] 2026-05-01 21:28:10,092 | INFO     | chi2: 1.2246312287134886
[2026-05-01 17:28:47] 2026-05-01 21:28:10,092 | INFO     | current chi2=1.2246312287134886 (change=69.55704191926806 %)
[2026-05-01 17:28:47] 2026-05-01 21:28:10,092 | INFO     | sum of square deviations: 16746343553.51324
[2026-05-01 17:28:47] 2026-05-01 21:28:10,120 | INFO     | sum of deviations: 56393557685.936554
[2026-05-01 17:28:47] 2026-05-01 21:28:10,120 | INFO     | mean x (centered): 0.0
[2026-05-01 17:28:47] 2026-05-01 21:28:10,120 | INFO     | mean y: 2499445.1825396824
[2026-05-01 17:28:47] 2026-05-01 21:28:10,120 | INFO     | intersect: 2499445.1825396824
[2026-05-01 17:28:47] 2026-05-01 21:28:10,121 | INFO     | chi2: 1.0155254712300672
[2026-05-01 17:28:47] 2026-05-01 21:28:10,121 | INFO     | current chi2=1.0155254712300672 (change=17.07499797331587 %)
[2026-05-01 17:28:47] 2026-05-01 21:28:10,121 | INFO     | left removable region: 10
[2026-05-01 17:28:47] 2026-05-01 21:28:10,121 | INFO     | sum of square deviations: 15961486103.707066
[2026-05-01 17:28:47] 2026-05-01 21:28:10,143 | INFO     | sum of deviations: 78626252561.97853
[2026-05-01 17:28:47] 2026-05-01 21:28:10,144 | INFO     | mean x (centered): 0.0
[2026-05-01 17:28:47] 2026-05-01 21:28:10,144 | INFO     | mean y: 2504554.494623656
[2026-05-01 17:28:47] 2026-05-01 21:28:10,144 | INFO     | intersect: 2504554.494623656
[2026-05-01 17:28:47] 2026-05-01 21:28:10,144 | INFO     | chi2: 0.3167757977339675
[2026-05-01 17:28:47] 2026-05-01 21:28:10,145 | INFO     | current memory leak: 4.93 B/s (using 372 data points, chi2=0.32)
[2026-05-01 17:28:47] 2026-05-01 21:28:10,145 | INFO     | could have reported an average CPU frequency of 2925 MHz (17 samples)
[2026-05-01 17:28:47] 2026-05-01 21:28:10,145 | INFO     | ..............................
[2026-05-01 17:28:47] 2026-05-01 21:28:10,145 | INFO     | . Timing measurements:
[2026-05-01 17:28:47] 2026-05-01 21:28:10,145 | INFO     | . get job = 0 s
[2026-05-01 17:28:47] 2026-05-01 21:28:10,146 | INFO     | . initial setup = 42 s
[2026-05-01 17:28:47] 2026-05-01 21:28:10,165 | INFO     | . payload setup = 60 s
[2026-05-01 17:28:47] 2026-05-01 21:28:10,165 | INFO     | . stage-in = 0 s
[2026-05-01 17:28:47] 2026-05-01 21:28:10,165 | INFO     | . payload execution = 23683 s
[2026-05-01 17:28:47] 2026-05-01 21:28:10,165 | INFO     | . stage-out = 6 s
[2026-05-01 17:28:47] 2026-05-01 21:28:10,165 | INFO     | . log creation = 0 s
[2026-05-01 17:28:47] 2026-05-01 21:28:10,165 | INFO     | ..............................
[2026-05-01 17:28:47] 2026-05-01 21:28:11,042 | INFO     | 
[2026-05-01 17:28:47] 2026-05-01 21:28:11,042 | INFO     | job summary report
[2026-05-01 17:28:47] 2026-05-01 21:28:11,042 | INFO     | --------------------------------------------------
[2026-05-01 17:28:47] 2026-05-01 21:28:11,042 | INFO     | PanDA job id: 7120419613
[2026-05-01 17:28:47] 2026-05-01 21:28:11,042 | INFO     | task id: 49718416
[2026-05-01 17:28:47] 2026-05-01 21:28:11,042 | INFO     | errors: (none)
[2026-05-01 17:28:47] 2026-05-01 21:28:11,042 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 17:28:47] 2026-05-01 21:28:11,042 | INFO     | pilot state: finished 
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | transexitcode: 0
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | exeerrorcode: 0
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | exeerrordiag: 
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | exitcode: 0
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | exitmsg: OK
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | cpuconsumptiontime: 43982 s
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | nevents: 400
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | neventsw: 0
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | pid: 4081428
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | pgrp: 4081428
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | corecount: 8
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | event service: False
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | sizes: {0: 2275327, 1: 2275355, 2: 2275355, 3: 2277184, 14: 2277184, 23748: 2312460, 23749: 2312587, 23756: 2321641, 23759: 2321697, 23762: 2321955}
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | --------------------------------------------------
[2026-05-01 17:28:47] 2026-05-01 21:28:11,043 | INFO     | 
[2026-05-01 17:28:47] 2026-05-01 21:28:11,044 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-05-01 17:28:47] 2026-05-01 21:28:11,277 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,278 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,278 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,278 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,278 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,278 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,278 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,278 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,278 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,278 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,279 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,279 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,279 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,279 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,279 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,279 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,279 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,279 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 17:28:47] 2026-05-01 21:28:11,279 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,279 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 17:28:47] 2026-05-01 21:28:11,280 | INFO     | job 7120419613 has completed (purged errors)
[2026-05-01 17:28:47] 2026-05-01 21:28:11,280 | INFO     | overall cleanup function is called
[2026-05-01 17:28:47] 2026-05-01 21:28:12,290 | INFO     | --- collectZombieJob: --- 10, [4081428]
[2026-05-01 17:28:47] 2026-05-01 21:28:12,290 | INFO     | zombie collector waiting for pid 4081428
[2026-05-01 17:28:47] 2026-05-01 21:28:12,290 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 17:28:47] 2026-05-01 21:28:12,290 | INFO     | collected zombie processes
[2026-05-01 17:28:47] 2026-05-01 21:28:12,290 | INFO     | will attempt to kill all subprocesses of pid=4081428
[2026-05-01 17:28:47] 2026-05-01 21:28:14,397 | INFO     | process IDs to be killed: [4081428] (in reverse order)
[2026-05-01 17:28:47] 2026-05-01 21:28:15,616 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 17:28:47] 2026-05-01 21:28:15,616 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 17:28:47] 2026-05-01 21:28:15,635 | INFO     | did not find any defunct processes belonging to 4081428
[2026-05-01 17:28:47] 2026-05-01 21:28:15,656 | INFO     | did not find any defunct processes belonging to 4081428
[2026-05-01 17:28:47] 2026-05-01 21:28:15,656 | INFO     | Ready for new job
[2026-05-01 17:28:47] 2026-05-01 21:28:15,659 | INFO     | ***************************************
[2026-05-01 17:28:47] 2026-05-01 21:28:15,659 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 17:28:47] 2026-05-01 21:28:15,659 | INFO     | ***************************************
[2026-05-01 17:28:47] 2026-05-01 21:28:15,659 | INFO     | 
[2026-05-01 17:28:47] 2026-05-01 21:28:15,662 | INFO     | architecture information:
[2026-05-01 17:28:47] 2026-05-01 21:28:15,663 | INFO     | executing command: cat /etc/os-release
[2026-05-01 17:28:47] 2026-05-01 21:28:15,765 | INFO     | cat /etc/os-release:
[2026-05-01 17:28:47] NAME="CentOS Linux"
[2026-05-01 17:28:47] VERSION="7 (Core)"
[2026-05-01 17:28:47] ID="centos"
[2026-05-01 17:28:47] ID_LIKE="rhel fedora"
[2026-05-01 17:28:47] VERSION_ID="7"
[2026-05-01 17:28:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 17:28:47] ANSI_COLOR="0;31"
[2026-05-01 17:28:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 17:28:47] HOME_URL="https://www.centos.org/"
[2026-05-01 17:28:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 17:28:47] 
[2026-05-01 17:28:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 17:28:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 17:28:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 17:28:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 17:28:47] 
[2026-05-01 17:28:47] 2026-05-01 21:28:15,765 | INFO     | ***************************************
[2026-05-01 17:28:47] 2026-05-01 21:28:16,269 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-05-01 17:28:47] 2026-05-01 21:28:16,395 | INFO     | sufficient remaining disk space (74293706752 B)
[2026-05-01 17:28:47] 2026-05-01 21:28:16,396 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 17:28:47] 2026-05-01 21:28:16,396 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 17:28:47] 2026-05-01 21:28:16,396 | INFO     | update_server=False
[2026-05-01 17:28:47] 2026-05-01 21:28:16,396 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 17:28:47] 2026-05-01 21:28:16,404 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 17:28:47] 2026-05-01 21:28:16,404 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 17:28:47] 2026-05-01 21:28:16,404 | INFO     | aborting loop
[2026-05-01 17:28:47] 2026-05-01 21:28:17,403 | INFO     | [job] retrieve thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:17,425 | INFO     | [job] queue monitor thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:17,426 | INFO     | [job] job monitor thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:17,449 | INFO     | all data control threads have been joined
[2026-05-01 17:28:47] 2026-05-01 21:28:17,528 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 17:28:47] 2026-05-01 21:28:17,600 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:17,601 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:17,601 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:17,602 | INFO     | [data] copytool_in thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:17,750 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 17:28:47] 2026-05-01 21:28:17,781 | INFO     | all payload control threads have been joined
[2026-05-01 17:28:47] 2026-05-01 21:28:17,851 | INFO     | all job control threads have been joined
[2026-05-01 17:28:47] 2026-05-01 21:28:18,323 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:18,455 | INFO     | [data] control thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:18,519 | INFO     | [payload] failed_post thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:18,524 | INFO     | [payload] validate_post thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:18,812 | INFO     | [payload] control thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:18,857 | INFO     | [job] control thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:18,884 | INFO     | [job] validate thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:19,545 | INFO     | [data] copytool_out thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:21,791 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 17:28:47] 2026-05-01 21:28:35,887 | INFO     | [monitor] cgroup control has ended
[2026-05-01 17:28:47] 2026-05-01 21:28:37,551 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140555070797632)>', '<ExcThread(monitor, started 140554549589760)>']
[2026-05-01 17:28:47] 2026-05-01 21:28:42,577 | INFO     | all workflow threads have been joined
[2026-05-01 17:28:47] 2026-05-01 21:28:42,577 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 17:28:47] 2026-05-01 21:28:42,577 | INFO     | traces error code: 0
[2026-05-01 17:28:47] 2026-05-01 21:28:42,579 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 17:28:47] 2026-05-01 21:28:46,389 | INFO     | PID=4075253 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-01 17:28:47] 2026-05-01 21:28:46,389 | INFO     | .. there are 23 such processes running
[2026-05-01 17:28:47] 2026-05-01 21:28:46,391 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 17:28:47] 2026-05-01 21:28:46,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 17:28:47] 2026-05-01 21:28:46,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 17:28:47] 2026-05-01 21:28:46,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 17:28:47] 2026-05-01 21:28:46,391 | INFO     | [monitor] control thread has ended
[2026-05-01 17:28:47] 2026-05-01 21:28:46,936 [wrapper] ==== pilot stdout END ====
[2026-05-01 17:28:47] 2026-05-01 21:28:46,995 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 17:28:47] 2026-05-01 21:28:47,059 [wrapper] pilotpid: 4075253
[2026-05-01 17:28:47] 2026-05-01 21:28:47,099 [wrapper] Pilot exit status: 0
[2026-05-01 17:28:47] 2026-05-01 21:28:47,174 [wrapper] pandaids: 7120419613
[2026-05-01 17:28:47] 2026-05-01 21:28:47,244 [wrapper] cleanup supervisor_pilot 1042176 4075254
[2026-05-01 17:28:47] 2026-05-01 21:28:47,246 [wrapper] Test setup, not cleaning
[2026-05-01 17:28:47] 2026-05-01 21:28:47,279 [wrapper] apfmon messages muted
[2026-05-01 17:28:47] 2026-05-01 21:28:47,282 [wrapper] ==== wrapper stdout END ====
[2026-05-01 17:28:47] 2026-05-01 21:28:47,285 [wrapper] ==== wrapper stderr END ====
[2026-05-01 17:28:47]  *** Error codes and diagnostics ***
[2026-05-01 17:28:48]     "exeErrorCode": 0,
[2026-05-01 17:28:48]     "pilotErrorCode": 0,
[2026-05-01 17:28:48]  *** Listing of results directory ***
[2026-05-01 17:28:48] total 630652
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas    683926 May  1 08:40 pilot3.tar.gz
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas      5631 May  1 08:41 queuedata.json
[2026-05-01 17:28:48] -rwx------. 1 boincer umatlas     36322 May  1 08:41 runpilot2-wrapper.sh
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas       100 May  1 10:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 17:28:48] -rwxr-xr-x. 1 boincer umatlas      7986 May  1 10:49 run_atlas
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas       105 May  1 10:49 job.xml
[2026-05-01 17:28:48] -rw-r--r--. 2 boincer umatlas 443767790 May  1 10:49 EVNT.46373187._000137.pool.root.1
[2026-05-01 17:28:48] -rw-r--r--. 2 boincer umatlas     15667 May  1 10:49 start_atlas.sh
[2026-05-01 17:28:48] drwxrwx--x. 2 boincer umatlas      4096 May  1 10:49 shared
[2026-05-01 17:28:48] -rw-r--r--. 2 boincer umatlas    697423 May  1 10:49 input.tar.gz
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas         0 May  1 10:49 boinc_lockfile
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas      2596 May  1 10:50 pandaJob.out
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas        57 May  1 10:50 setup.sh.local
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas   1003083 May  1 10:51 agis_schedconf.cvmfs.json
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas       442 May  1 10:51 workernode_map.json
[2026-05-01 17:28:48] drwx------. 5 boincer umatlas      4096 May  1 10:51 pilot3
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas      6756 May  1 17:18 init_data.xml
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas 192800518 May  1 17:26 HITS.49718416._017987.pool.root.1
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas       489 May  1 17:26 boinc_task_state.xml
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas      1038 May  1 17:27 memory_monitor_summary.json
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas   1508687 May  1 17:28 agis_ddmendpoints.agis.ALL.json
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas    502587 May  1 17:28 log.49718416._017987.job.log.tgz.1
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas      6410 May  1 17:28 heartbeat_new.json
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas      6301 May  1 17:28 heartbeat.json
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas      8192 May  1 17:28 boinc_mmap_file
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas        28 May  1 17:28 wrapper_checkpoint.txt
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas        95 May  1 17:28 pilot_heartbeat.json
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas       823 May  1 17:28 pilotlog.txt
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas   2036645 May  1 17:28 log.49718416._017987.job.log.1
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas       357 May  1 17:28 output.list
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas       410 May  1 17:28 runtime_log
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas   2560000 May  1 17:28 result.tar.gz
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas      8970 May  1 17:28 runtime_log.err
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas       656 May  1 17:28 9f7faf518866.diag
[2026-05-01 17:28:48] -rw-r--r--. 1 boincer umatlas     21325 May  1 17:28 stderr.txt
[2026-05-01 17:28:48] HITS file was successfully produced:
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas 192800518 May  1 17:26 shared/HITS.pool.root.1
[2026-05-01 17:28:48]  *** Contents of shared directory: ***
[2026-05-01 17:28:48] total 624860
[2026-05-01 17:28:48] -rw-r--r--. 2 boincer umatlas 443767790 May  1 10:49 ATLAS.root_0
[2026-05-01 17:28:48] -rw-r--r--. 2 boincer umatlas     15667 May  1 10:49 start_atlas.sh
[2026-05-01 17:28:48] -rw-r--r--. 2 boincer umatlas    697423 May  1 10:49 input.tar.gz
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas 192800518 May  1 17:26 HITS.pool.root.1
[2026-05-01 17:28:48] -rw-------. 1 boincer umatlas   2560000 May  1 17:28 result.tar.gz
17:28:49 (4069438): run_atlas exited; CPU time 44585.253833
17:28:49 (4069438): called boinc_finish(0)

</stderr_txt>
]]>

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