Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:00:32 (348607): wrapper (7.7.26015): starting
15:00:32 (348607): wrapper: running run_atlas (--nthreads 12)
[2026-05-01 15:00:32] Arguments: --nthreads 12
[2026-05-01 15:00:32] Threads: 12
[2026-05-01 15:00:32] Checking for CVMFS
[2026-05-01 15:00:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-01 15:00:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-01 15:00:32] Running cvmfs_config stat atlas.cern.ch
[2026-05-01 15:00:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-01 15:00:32] 2.13.3.0 84518 12902 99400 159094 1 188 26246431 46080001 12797 130560 0 135472627 99.987 3965201 33579 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-05-01 15:00:32] CVMFS is ok
[2026-05-01 15:00:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-01 15:00:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-01 15:00:32] Further information can be found at the LHC@home message board.
[2026-05-01 15:00:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 15:00:32] Checking for apptainer binary...
[2026-05-01 15:00:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-01 15:00:32] Running /usr/bin/apptainer --version
[2026-05-01 15:00:32] apptainer version 1.4.5-3.el9
[2026-05-01 15:00:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 15:00:32] gpu02.farm.particle.cz
[2026-05-01 15:00:32] apptainer works
[2026-05-01 15:00:32] Set ATHENA_PROC_NUMBER=12
[2026-05-01 15:00:32] Set ATHENA_CORE_NUMBER=12
[2026-05-01 15:00:32] Starting ATLAS job with PandaID=7120014249
[2026-05-01 15:00:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 15:28:10]  *** The last 200 lines of the pilot log: ***
[2026-05-01 15:28:10]  guid=1a106eda-c41a-4e08-9e69-9355c04ec2b3
[2026-05-01 15:28:10]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-01 15:28:10]  is_altstaged=None
[2026-05-01 15:28:10]  is_tar=False
[2026-05-01 15:28:10]  lfn=log.49718416._014895.job.log.tgz.1
[2026-05-01 15:28:10]  mtime=0
[2026-05-01 15:28:10]  protocol_id=None
[2026-05-01 15:28:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-01 15:28:10]  replicas=None
[2026-05-01 15:28:10]  scope=mc23_13p6TeV
[2026-05-01 15:28:10]  status=None
[2026-05-01 15:28:10]  status_code=0
[2026-05-01 15:28:10]  storage_token=
[2026-05-01 15:28:10]  surl=/var/lib/boinc/slots/10/PanDA_Pilot-7120014249/log.49718416._014895.job.log.tgz.1
[2026-05-01 15:28:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/5e/log.49718416._014895.job.log.tgz.1
[2026-05-01 15:28:10]  workdir=None
[2026-05-01 15:28:10] ]
[2026-05-01 15:28:10] 2026-05-01 13:27:34,084 | INFO     | transferring file log.49718416._014895.job.log.tgz.1 from /var/lib/boinc/slots/10/PanDA_Pilot-7120014249/log.49718416._014895.job.log.tgz.1 to /var/lib/boinc/slots
[2026-05-01 15:28:10] 2026-05-01 13:27:34,084 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/10/PanDA_Pilot-7120014249/log.49718416._014895.job.log.tgz.1 /var/lib/boinc/slots/10/log.49718416._014895.j
[2026-05-01 15:28:10] 2026-05-01 13:27:34,098 | INFO     | adding to output.list: log.49718416._014895.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/5e/log.49718416._014895.job.log.tg
[2026-05-01 15:28:10] 2026-05-01 13:27:34,099 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-01 15:28:10] 2026-05-01 13:27:34,099 | INFO     | summary of transferred files:
[2026-05-01 15:28:10] 2026-05-01 13:27:34,099 | INFO     |  -- lfn=log.49718416._014895.job.log.tgz.1, status_code=0, status=transferred
[2026-05-01 15:28:10] 2026-05-01 13:27:34,099 | INFO     | stage-out finished correctly
[2026-05-01 15:28:10] 2026-05-01 13:27:34,992 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-01 15:28:10] 2026-05-01 13:27:37,297 | INFO     | job 7120014249 has state=finished
[2026-05-01 15:28:10] 2026-05-01 13:27:37,297 | INFO     | preparing for final server update for job 7120014249 in state='finished'
[2026-05-01 15:28:10] 2026-05-01 13:27:37,297 | INFO     | reading metadata from: /var/lib/boinc/slots/10/PanDA_Pilot-7120014249/jobReport.json
[2026-05-01 15:28:10] 2026-05-01 13:27:37,300 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/10/workernode_map.json
[2026-05-01 15:28:10] 2026-05-01 13:27:37,300 | INFO     | this job has now completed (state=finished)
[2026-05-01 15:28:10] 2026-05-01 13:27:37,300 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-01 15:28:10] 2026-05-01 13:27:37,300 | INFO     | log transfer has been attempted: DONE
[2026-05-01 15:28:10] 2026-05-01 13:27:37,300 | INFO     | job 7120014249 has finished - writing final server update
[2026-05-01 15:28:10] 2026-05-01 13:27:37,300 | INFO     | total number of processed events: 400 (read)
[2026-05-01 15:28:10] 2026-05-01 13:27:37,320 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-7120014249/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 15:28:10] 2026-05-01 13:27:37,320 | INFO     | extracted standard info from prmon json
[2026-05-01 15:28:10] 2026-05-01 13:27:37,320 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 15:28:10] 2026-05-01 13:27:37,320 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 15:28:10] 2026-05-01 13:27:37,320 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 15:28:10] 2026-05-01 13:27:37,321 | INFO     | fitting pss+swap vs Time
[2026-05-01 15:28:10] 2026-05-01 13:27:37,321 | INFO     | sum of square deviations: 2474465.0
[2026-05-01 15:28:10] 2026-05-01 13:27:37,321 | INFO     | sum of deviations: 29857060.0
[2026-05-01 15:28:10] 2026-05-01 13:27:37,321 | INFO     | mean x (centered): 0.0
[2026-05-01 15:28:10] 2026-05-01 13:27:37,321 | INFO     | mean y: 2679858.6
[2026-05-01 15:28:10] 2026-05-01 13:27:37,321 | INFO     | intersect: 2679858.6
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | chi2: 3.7572816434332235e-05
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | current memory leak: 12.07 B/s (using 20 data points, chi2=0.00)
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | could have reported an average CPU frequency of 3355 MHz (4 samples)
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | ..............................
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | . Timing measurements:
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | . get job = 0 s
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | . initial setup = 3 s
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | . payload setup = 4 s
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | . stage-in = 0 s
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | . payload execution = 1592 s
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | . stage-out = 0 s
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | . log creation = 0 s
[2026-05-01 15:28:10] 2026-05-01 13:27:37,322 | INFO     | ..............................
[2026-05-01 15:28:10] 2026-05-01 13:27:37,399 | WARNING  | process 358303 can no longer be monitored (due to stat problems) - aborting
[2026-05-01 15:28:10] 2026-05-01 13:27:37,400 | INFO     | using path: /var/lib/boinc/slots/10/PanDA_Pilot-7120014249/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 15:28:10] 2026-05-01 13:27:37,568 | INFO     | number of running child processes to parent process 358303: 1
[2026-05-01 15:28:10] 2026-05-01 13:27:37,569 | INFO     | maximum number of monitored processes: 6
[2026-05-01 15:28:10] 2026-05-01 13:27:37,569 | INFO     | aborting job monitoring since job object (job id=7120014249) has expired
[2026-05-01 15:28:10] 2026-05-01 13:27:37,745 | INFO     | 
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | job summary report
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | --------------------------------------------------
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | PanDA job id: 7120014249
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | task id: 49718416
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | errors: (none)
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | pilot state: finished 
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | transexitcode: 0
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | exeerrorcode: 0
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | exeerrordiag: 
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | exitcode: 0
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | exitmsg: OK
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | cpuconsumptiontime: 16930 s
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | nevents: 400
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | neventsw: 0
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | pid: 358303
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | pgrp: 358303
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | corecount: 12
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | event service: False
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | sizes: {0: 2277129, 11: 2277129, 1601: 2301932, 1602: 2310932, 1603: 2310988, 1605: 2311182}
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | --------------------------------------------------
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | 
[2026-05-01 15:28:10] 2026-05-01 13:27:37,746 | INFO     | executing command: ls -lF /var/lib/boinc/slots/10
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,767 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,768 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,768 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,768 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 15:28:10] 2026-05-01 13:27:37,768 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,768 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 15:28:10] 2026-05-01 13:27:37,768 | INFO     | job 7120014249 has completed (purged errors)
[2026-05-01 15:28:10] 2026-05-01 13:27:37,768 | INFO     | overall cleanup function is called
[2026-05-01 15:28:10] 2026-05-01 13:27:38,775 | INFO     | --- collectZombieJob: --- 10, [358303]
[2026-05-01 15:28:10] 2026-05-01 13:27:38,775 | INFO     | zombie collector waiting for pid 358303
[2026-05-01 15:28:10] 2026-05-01 13:27:38,776 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 15:28:10] 2026-05-01 13:27:38,776 | INFO     | collected zombie processes
[2026-05-01 15:28:10] 2026-05-01 13:27:38,776 | INFO     | will attempt to kill all subprocesses of pid=358303
[2026-05-01 15:28:10] 2026-05-01 13:27:38,952 | INFO     | process IDs to be killed: [358303] (in reverse order)
[2026-05-01 15:28:10] 2026-05-01 13:27:39,032 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 15:28:10] 2026-05-01 13:27:39,033 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 15:28:10] 2026-05-01 13:27:39,045 | INFO     | did not find any defunct processes belonging to 358303
[2026-05-01 15:28:10] 2026-05-01 13:27:39,055 | INFO     | did not find any defunct processes belonging to 358303
[2026-05-01 15:28:10] 2026-05-01 13:27:39,055 | INFO     | Ready for new job
[2026-05-01 15:28:10] 2026-05-01 13:27:39,056 | INFO     | ***************************************
[2026-05-01 15:28:10] 2026-05-01 13:27:39,056 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 15:28:10] 2026-05-01 13:27:39,056 | INFO     | ***************************************
[2026-05-01 15:28:10] 2026-05-01 13:27:39,056 | INFO     | 
[2026-05-01 15:28:10] 2026-05-01 13:27:39,059 | INFO     | architecture information:
[2026-05-01 15:28:10] 2026-05-01 13:27:39,060 | INFO     | executing command: cat /etc/os-release
[2026-05-01 15:28:10] 2026-05-01 13:27:39,070 | INFO     | cat /etc/os-release:
[2026-05-01 15:28:10] NAME="CentOS Linux"
[2026-05-01 15:28:10] VERSION="7 (Core)"
[2026-05-01 15:28:10] ID="centos"
[2026-05-01 15:28:10] ID_LIKE="rhel fedora"
[2026-05-01 15:28:10] VERSION_ID="7"
[2026-05-01 15:28:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 15:28:10] ANSI_COLOR="0;31"
[2026-05-01 15:28:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 15:28:10] HOME_URL="https://www.centos.org/"
[2026-05-01 15:28:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 15:28:10] 
[2026-05-01 15:28:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 15:28:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 15:28:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 15:28:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 15:28:10] 
[2026-05-01 15:28:10] 2026-05-01 13:27:39,070 | INFO     | ***************************************
[2026-05-01 15:28:10] 2026-05-01 13:27:39,573 | INFO     | executing command: df -mP /var/lib/boinc/slots/10
[2026-05-01 15:28:10] 2026-05-01 13:27:39,589 | INFO     | sufficient remaining disk space (673196277760 B)
[2026-05-01 15:28:10] 2026-05-01 13:27:39,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 15:28:10] 2026-05-01 13:27:39,589 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 15:28:10] 2026-05-01 13:27:39,589 | INFO     | update_server=False
[2026-05-01 15:28:10] 2026-05-01 13:27:39,589 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 15:28:10] 2026-05-01 13:27:39,652 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 15:28:10] 2026-05-01 13:27:39,678 | INFO     | all data control threads have been joined
[2026-05-01 15:28:10] 2026-05-01 13:27:40,072 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-01 15:28:10] 2026-05-01 13:27:40,072 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-01 15:28:10] 2026-05-01 13:27:40,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 15:28:10] 2026-05-01 13:27:40,072 | INFO     | will abort loop
[2026-05-01 15:28:10] 2026-05-01 13:27:40,489 | INFO     | all job control threads have been joined
[2026-05-01 15:28:10] 2026-05-01 13:27:40,595 | INFO     | [job] retrieve thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:40,661 | INFO     | [data] copytool_in thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:40,683 | INFO     | [data] control thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:40,988 | INFO     | all payload control threads have been joined
[2026-05-01 15:28:10] 2026-05-01 13:27:41,042 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 15:28:10] 2026-05-01 13:27:41,078 | INFO     | [job] job monitor thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:41,389 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:41,494 | INFO     | [job] control thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:41,658 | INFO     | [data] copytool_out thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:41,784 | INFO     | [job] validate thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:41,940 | INFO     | [payload] validate_post thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:41,966 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:41,994 | INFO     | [payload] control thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:41,997 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:42,136 | INFO     | [payload] failed_post thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:42,383 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 15:28:10] 2026-05-01 13:27:42,775 | INFO     | [monitor] cgroup control has ended
[2026-05-01 15:28:10] 2026-05-01 13:27:43,389 | INFO     | [job] queue monitor thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:45,048 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:50,495 | INFO     | job.realtimelogging is not enabled
[2026-05-01 15:28:10] 2026-05-01 13:27:51,500 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 15:28:10] 2026-05-01 13:27:51,525 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140295767697216)>', '<ExcThread(monitor, started 140295417087744)>']
[2026-05-01 15:28:10] 2026-05-01 13:27:56,550 | INFO     | all workflow threads have been joined
[2026-05-01 15:28:10] 2026-05-01 13:27:56,551 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 15:28:10] 2026-05-01 13:27:56,551 | INFO     | traces error code: 0
[2026-05-01 15:28:10] 2026-05-01 13:27:56,551 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 15:28:10] 2026-05-01 13:28:10,018 | INFO     | PID=353030 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-01 15:28:10] 2026-05-01 13:28:10,018 | INFO     | .. there are 15 such processes running
[2026-05-01 15:28:10] 2026-05-01 13:28:10,019 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 15:28:10] 2026-05-01 13:28:10,019 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 15:28:10] 2026-05-01 13:28:10,019 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 15:28:10] 2026-05-01 13:28:10,019 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 15:28:10] 2026-05-01 13:28:10,019 | INFO     | [monitor] control thread has ended
[2026-05-01 15:28:10] 2026-05-01 13:28:10,175 [wrapper] ==== pilot stdout END ====
[2026-05-01 15:28:10] 2026-05-01 13:28:10,177 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 15:28:10] 2026-05-01 13:28:10,179 [wrapper] pilotpid: 353030
[2026-05-01 15:28:10] 2026-05-01 13:28:10,180 [wrapper] Pilot exit status: 0
[2026-05-01 15:28:10] 2026-05-01 13:28:10,189 [wrapper] pandaids: 7120014249
[2026-05-01 15:28:10] 2026-05-01 13:28:10,250 [wrapper] cleanup supervisor_pilot  474577 353031
[2026-05-01 15:28:10] 2026-05-01 13:28:10,252 [wrapper] Test setup, not cleaning
[2026-05-01 15:28:10] 2026-05-01 13:28:10,254 [wrapper] apfmon messages muted
[2026-05-01 15:28:10] 2026-05-01 13:28:10,256 [wrapper] ==== wrapper stdout END ====
[2026-05-01 15:28:10] 2026-05-01 13:28:10,257 [wrapper] ==== wrapper stderr END ====
[2026-05-01 15:28:10]  *** Error codes and diagnostics ***
[2026-05-01 15:28:10]     "exeErrorCode": 0,
[2026-05-01 15:28:10]     "pilotErrorCode": 0,
[2026-05-01 15:28:10]  *** Listing of results directory ***
[2026-05-01 15:28:10] total 625248
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc      5631 May  1 10:43 queuedata.json
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc    683926 May  1 10:43 pilot3.tar.gz
[2026-05-01 15:28:10] -rwx------. 1 boinc boinc     36322 May  1 10:43 runpilot2-wrapper.sh
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc       100 May  1 15:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 15:28:10] -rwxr-xr-x. 1 boinc boinc      7986 May  1 15:00 run_atlas
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc       105 May  1 15:00 job.xml
[2026-05-01 15:28:10] -rw-r--r--. 2 boinc boinc 445041295 May  1 15:00 EVNT.46373187._000075.pool.root.1
[2026-05-01 15:28:10] -rw-r--r--. 2 boinc boinc     15667 May  1 15:00 start_atlas.sh
[2026-05-01 15:28:10] drwxrwx--x. 2 boinc boinc      4096 May  1 15:00 shared
[2026-05-01 15:28:10] -rw-r--r--. 2 boinc boinc    697427 May  1 15:00 input.tar.gz
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc      6675 May  1 15:00 init_data.xml
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc         0 May  1 15:00 boinc_lockfile
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc      2596 May  1 15:00 pandaJob.out
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc   1003083 May  1 15:00 agis_schedconf.cvmfs.json
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc   1508687 May  1 15:00 agis_ddmendpoints.agis.ALL.json
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc       435 May  1 15:00 workernode_map.json
[2026-05-01 15:28:10] drwx------. 5 boinc boinc      4096 May  1 15:00 pilot3
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc 189950556 May  1 15:27 HITS.49718416._014895.pool.root.1
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc       488 May  1 15:27 boinc_task_state.xml
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc      1030 May  1 15:27 memory_monitor_summary.json
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc    363043 May  1 15:27 log.49718416._014895.job.log.tgz.1
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc      6362 May  1 15:27 heartbeat_new.json
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc      6253 May  1 15:27 heartbeat.json
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc        27 May  1 15:28 wrapper_checkpoint.txt
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc       822 May  1 15:28 pilotlog.txt
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc        95 May  1 15:28 pilot_heartbeat.json
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc      8192 May  1 15:28 boinc_mmap_file
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc    197842 May  1 15:28 log.49718416._014895.job.log.1
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc       357 May  1 15:28 output.list
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc       410 May  1 15:28 runtime_log
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc    583680 May  1 15:28 result.tar.gz
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc      8492 May  1 15:28 runtime_log.err
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc       659 May  1 15:28 67cb0f0d4b10.diag
[2026-05-01 15:28:10] -rw-r--r--. 1 boinc boinc     21295 May  1 15:28 stderr.txt
[2026-05-01 15:28:10] HITS file was successfully produced:
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc 189950556 May  1 15:27 shared/HITS.pool.root.1
[2026-05-01 15:28:10]  *** Contents of shared directory: ***
[2026-05-01 15:28:10] total 621392
[2026-05-01 15:28:10] -rw-r--r--. 2 boinc boinc 445041295 May  1 15:00 ATLAS.root_0
[2026-05-01 15:28:10] -rw-r--r--. 2 boinc boinc     15667 May  1 15:00 start_atlas.sh
[2026-05-01 15:28:10] -rw-r--r--. 2 boinc boinc    697427 May  1 15:00 input.tar.gz
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc 189950556 May  1 15:27 HITS.pool.root.1
[2026-05-01 15:28:10] -rw-------. 1 boinc boinc    583680 May  1 15:28 result.tar.gz
15:28:11 (348607): run_atlas exited; CPU time 16949.601410
15:28:11 (348607): called boinc_finish(0)

</stderr_txt>
]]>

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