Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:38:03 (12909): wrapper (7.7.26015): starting
04:38:03 (12909): wrapper: running run_atlas (--nthreads 8)
[2026-05-02 04:38:03] Arguments: --nthreads 8
[2026-05-02 04:38:03] Threads: 8
[2026-05-02 04:38:03] Checking for CVMFS
[2026-05-02 04:38:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-02 04:38:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-02 04:38:03] Running cvmfs_config stat atlas.cern.ch
[2026-05-02 04:38:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-02 04:38:04] 2.11.2.0 26242 23599 100248 159116 0 73 22721762 25165825 96 130560 0 7607061 99.865 6295622 8745 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-02 04:38:04] CVMFS is ok
[2026-05-02 04:38:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 04:38:04] Checking for apptainer binary...
[2026-05-02 04:38:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-02 04:38:04] Running /usr/bin/apptainer --version
[2026-05-02 04:38:04] apptainer version 1.3.2-1.el7
[2026-05-02 04:38:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 04:38:05] cg-vwn414.simple-grid.lan
[2026-05-02 04:38:05] apptainer works
[2026-05-02 04:38:05] Set ATHENA_PROC_NUMBER=8
[2026-05-02 04:38:05] Set ATHENA_CORE_NUMBER=8
[2026-05-02 04:38:05] Starting ATLAS job with PandaID=7120316944
[2026-05-02 04:38:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 08:48:08]  *** The last 200 lines of the pilot log: ***
[2026-05-02 08:48:08] 2026-05-02 06:47:14,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-02 08:48:08] 2026-05-02 06:47:14,807 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-02 08:48:08] 2026-05-02 06:47:16,075 | INFO     | job 7120316944 has state=finished
[2026-05-02 08:48:08] 2026-05-02 06:47:16,075 | INFO     | preparing for final server update for job 7120316944 in state='finished'
[2026-05-02 08:48:08] 2026-05-02 06:47:16,775 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-05-02 08:48:08] 2026-05-02 06:47:16,776 | INFO     | reading metadata from: /var/lib/boinc/slots/7/PanDA_Pilot-7120316944/jobReport.json
[2026-05-02 08:48:08] 2026-05-02 06:47:16,779 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/7/workernode_map.json
[2026-05-02 08:48:08] 2026-05-02 06:47:16,779 | INFO     | this job has now completed (state=finished)
[2026-05-02 08:48:08] 2026-05-02 06:47:16,779 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-02 08:48:08] 2026-05-02 06:47:16,780 | INFO     | log transfer has been attempted: DONE
[2026-05-02 08:48:08] 2026-05-02 06:47:16,780 | INFO     | job 7120316944 has finished - writing final server update
[2026-05-02 08:48:08] 2026-05-02 06:47:16,780 | INFO     | total number of processed events: 400 (read)
[2026-05-02 08:48:08] 2026-05-02 06:47:16,782 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7120316944/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 08:48:08] 2026-05-02 06:47:16,783 | INFO     | extracted standard info from prmon json
[2026-05-02 08:48:08] 2026-05-02 06:47:16,783 | INFO     | extracted standard memory fields from prmon json
[2026-05-02 08:48:08] 2026-05-02 06:47:16,783 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-02 08:48:08] 2026-05-02 06:47:16,784 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-02 08:48:08] 2026-05-02 06:47:16,789 | INFO     | fitting pss+swap vs Time
[2026-05-02 08:48:08] 2026-05-02 06:47:16,790 | INFO     | sum of square deviations: 4504437945.0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,792 | INFO     | sum of deviations: -3518682977.4999523
[2026-05-02 08:48:08] 2026-05-02 06:47:16,792 | INFO     | mean x (centered): 0.0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,792 | INFO     | mean y: 2497186.5286885244
[2026-05-02 08:48:08] 2026-05-02 06:47:16,792 | INFO     | intersect: 2497186.5286885244
[2026-05-02 08:48:08] 2026-05-02 06:47:16,793 | INFO     | chi2: 3.3097582466757367
[2026-05-02 08:48:08] 2026-05-02 06:47:16,794 | INFO     | sum of square deviations: 4233158440.0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,799 | INFO     | sum of deviations: 12902494360.999992
[2026-05-02 08:48:08] 2026-05-02 06:47:16,799 | INFO     | mean x (centered): 0.0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,799 | INFO     | mean y: 2506265.422594142
[2026-05-02 08:48:08] 2026-05-02 06:47:16,799 | INFO     | intersect: 2506265.422594142
[2026-05-02 08:48:08] 2026-05-02 06:47:16,800 | INFO     | chi2: 2.538253843086309
[2026-05-02 08:48:08] 2026-05-02 06:47:16,800 | INFO     | current chi2=2.538253843086309 (change=23.30999263660158 %)
[2026-05-02 08:48:08] 2026-05-02 06:47:16,800 | INFO     | right removable region: 238
[2026-05-02 08:48:08] 2026-05-02 06:47:16,801 | INFO     | sum of square deviations: 4233158440.0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,803 | INFO     | sum of deviations: -59437374468.00001
[2026-05-02 08:48:08] 2026-05-02 06:47:16,803 | INFO     | mean x (centered): 0.0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,803 | INFO     | mean y: 2528473.418410042
[2026-05-02 08:48:08] 2026-05-02 06:47:16,803 | INFO     | intersect: 2528473.418410042
[2026-05-02 08:48:08] 2026-05-02 06:47:16,804 | INFO     | chi2: 1.0460365075052698
[2026-05-02 08:48:08] 2026-05-02 06:47:16,804 | INFO     | current chi2=1.0460365075052698 (change=68.39538028023978 %)
[2026-05-02 08:48:08] 2026-05-02 06:47:16,804 | INFO     | sum of square deviations: 3972995422.5
[2026-05-02 08:48:08] 2026-05-02 06:47:16,807 | INFO     | sum of deviations: -61641371689.99998
[2026-05-02 08:48:08] 2026-05-02 06:47:16,807 | INFO     | mean x (centered): 0.0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,807 | INFO     | mean y: 2529716.128205128
[2026-05-02 08:48:08] 2026-05-02 06:47:16,807 | INFO     | intersect: 2529716.128205128
[2026-05-02 08:48:08] 2026-05-02 06:47:16,807 | INFO     | chi2: 1.0002128126557752
[2026-05-02 08:48:08] 2026-05-02 06:47:16,808 | INFO     | current chi2=1.0002128126557752 (change=4.3806974728617405 %)
[2026-05-02 08:48:08] 2026-05-02 06:47:16,808 | INFO     | left removable region: 10
[2026-05-02 08:48:08] 2026-05-02 06:47:16,808 | INFO     | sum of square deviations: 3675146117.0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,810 | INFO     | sum of deviations: -44510523919.999985
[2026-05-02 08:48:08] 2026-05-02 06:47:16,811 | INFO     | mean x (centered): 0.0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,811 | INFO     | mean y: 2540034.01754386
[2026-05-02 08:48:08] 2026-05-02 06:47:16,811 | INFO     | intersect: 2540034.01754386
[2026-05-02 08:48:08] 2026-05-02 06:47:16,811 | INFO     | chi2: 0.19521548657755725
[2026-05-02 08:48:08] 2026-05-02 06:47:16,812 | INFO     | current memory leak: -12.11 B/s (using 228 data points, chi2=0.20)
[2026-05-02 08:48:08] 2026-05-02 06:47:16,812 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-05-02 08:48:08] 2026-05-02 06:47:16,812 | INFO     | ..............................
[2026-05-02 08:48:08] 2026-05-02 06:47:16,812 | INFO     | . Timing measurements:
[2026-05-02 08:48:08] 2026-05-02 06:47:16,813 | INFO     | . get job = 0 s
[2026-05-02 08:48:08] 2026-05-02 06:47:16,813 | INFO     | . initial setup = 8 s
[2026-05-02 08:48:08] 2026-05-02 06:47:16,813 | INFO     | . payload setup = 19 s
[2026-05-02 08:48:08] 2026-05-02 06:47:16,813 | INFO     | . stage-in = 0 s
[2026-05-02 08:48:08] 2026-05-02 06:47:16,813 | INFO     | . payload execution = 14891 s
[2026-05-02 08:48:08] 2026-05-02 06:47:16,813 | INFO     | . stage-out = 3 s
[2026-05-02 08:48:08] 2026-05-02 06:47:16,813 | INFO     | . log creation = 0 s
[2026-05-02 08:48:08] 2026-05-02 06:47:16,814 | INFO     | ..............................
[2026-05-02 08:48:08] 2026-05-02 06:47:16,941 | INFO     | 
[2026-05-02 08:48:08] 2026-05-02 06:47:16,941 | INFO     | job summary report
[2026-05-02 08:48:08] 2026-05-02 06:47:16,941 | INFO     | --------------------------------------------------
[2026-05-02 08:48:08] 2026-05-02 06:47:16,942 | INFO     | PanDA job id: 7120316944
[2026-05-02 08:48:08] 2026-05-02 06:47:16,942 | INFO     | task id: 49718416
[2026-05-02 08:48:08] 2026-05-02 06:47:16,942 | INFO     | errors: (none)
[2026-05-02 08:48:08] 2026-05-02 06:47:16,942 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-02 08:48:08] 2026-05-02 06:47:16,942 | INFO     | pilot state: finished 
[2026-05-02 08:48:08] 2026-05-02 06:47:16,942 | INFO     | transexitcode: 0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,942 | INFO     | exeerrorcode: 0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,942 | INFO     | exeerrordiag: 
[2026-05-02 08:48:08] 2026-05-02 06:47:16,942 | INFO     | exitcode: 0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,942 | INFO     | exitmsg: OK
[2026-05-02 08:48:08] 2026-05-02 06:47:16,943 | INFO     | cpuconsumptiontime: 57853 s
[2026-05-02 08:48:08] 2026-05-02 06:47:16,943 | INFO     | nevents: 400
[2026-05-02 08:48:08] 2026-05-02 06:47:16,943 | INFO     | neventsw: 0
[2026-05-02 08:48:08] 2026-05-02 06:47:16,943 | INFO     | pid: 21232
[2026-05-02 08:48:08] 2026-05-02 06:47:16,943 | INFO     | pgrp: 21232
[2026-05-02 08:48:08] 2026-05-02 06:47:16,943 | INFO     | corecount: 8
[2026-05-02 08:48:08] 2026-05-02 06:47:16,943 | INFO     | event service: False
[2026-05-02 08:48:08] 2026-05-02 06:47:16,943 | INFO     | sizes: {0: 2275323, 1: 2277152, 14915: 2308138, 14920: 2317136, 14922: 2317192, 14924: 2317386}
[2026-05-02 08:48:08] 2026-05-02 06:47:16,943 | INFO     | --------------------------------------------------
[2026-05-02 08:48:08] 2026-05-02 06:47:16,943 | INFO     | 
[2026-05-02 08:48:08] 2026-05-02 06:47:16,944 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-05-02 08:48:08] 2026-05-02 06:47:17,523 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,524 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,524 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,524 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,524 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,524 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,524 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,524 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,525 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,525 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,525 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,525 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,525 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,525 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,525 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,525 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,526 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,526 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-02 08:48:08] 2026-05-02 06:47:17,526 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,526 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-02 08:48:08] 2026-05-02 06:47:17,526 | INFO     | job 7120316944 has completed (purged errors)
[2026-05-02 08:48:08] 2026-05-02 06:47:17,526 | INFO     | overall cleanup function is called
[2026-05-02 08:48:08] 2026-05-02 06:47:18,535 | INFO     | --- collectZombieJob: --- 10, [21232]
[2026-05-02 08:48:08] 2026-05-02 06:47:18,535 | INFO     | zombie collector waiting for pid 21232
[2026-05-02 08:48:08] 2026-05-02 06:47:18,535 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 08:48:08] 2026-05-02 06:47:18,535 | INFO     | collected zombie processes
[2026-05-02 08:48:08] 2026-05-02 06:47:18,536 | INFO     | will attempt to kill all subprocesses of pid=21232
[2026-05-02 08:48:08] 2026-05-02 06:47:18,594 | INFO     | process IDs to be killed: [21232] (in reverse order)
[2026-05-02 08:48:08] 2026-05-02 06:47:19,180 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 08:48:08] 2026-05-02 06:47:19,180 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 08:48:08] 2026-05-02 06:47:19,182 | INFO     | did not find any defunct processes belonging to 21232
[2026-05-02 08:48:08] 2026-05-02 06:47:19,184 | INFO     | did not find any defunct processes belonging to 21232
[2026-05-02 08:48:08] 2026-05-02 06:47:19,184 | INFO     | Ready for new job
[2026-05-02 08:48:08] 2026-05-02 06:47:19,186 | INFO     | ***************************************
[2026-05-02 08:48:08] 2026-05-02 06:47:19,186 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 08:48:08] 2026-05-02 06:47:19,186 | INFO     | ***************************************
[2026-05-02 08:48:08] 2026-05-02 06:47:19,186 | INFO     | 
[2026-05-02 08:48:08] 2026-05-02 06:47:19,187 | INFO     | pilot is running in a VM
[2026-05-02 08:48:08] 2026-05-02 06:47:19,187 | INFO     | architecture information:
[2026-05-02 08:48:08] 2026-05-02 06:47:19,197 | INFO     | executing command: cat /etc/os-release
[2026-05-02 08:48:08] 2026-05-02 06:47:19,621 | INFO     | cat /etc/os-release:
[2026-05-02 08:48:08] NAME="CentOS Linux"
[2026-05-02 08:48:08] VERSION="7 (Core)"
[2026-05-02 08:48:08] ID="centos"
[2026-05-02 08:48:08] ID_LIKE="rhel fedora"
[2026-05-02 08:48:08] VERSION_ID="7"
[2026-05-02 08:48:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 08:48:08] ANSI_COLOR="0;31"
[2026-05-02 08:48:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 08:48:08] HOME_URL="https://www.centos.org/"
[2026-05-02 08:48:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 08:48:08] 
[2026-05-02 08:48:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 08:48:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 08:48:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 08:48:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 08:48:08] 
[2026-05-02 08:48:08] 2026-05-02 06:47:19,622 | INFO     | ***************************************
[2026-05-02 08:48:08] 2026-05-02 06:47:20,125 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-05-02 08:48:08] 2026-05-02 06:47:20,450 | INFO     | sufficient remaining disk space (495866347520 B)
[2026-05-02 08:48:08] 2026-05-02 06:47:20,451 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 08:48:08] 2026-05-02 06:47:20,451 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 08:48:08] 2026-05-02 06:47:20,451 | INFO     | update_server=False
[2026-05-02 08:48:08] 2026-05-02 06:47:20,451 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 08:48:08] 2026-05-02 06:47:20,473 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 08:48:08] 2026-05-02 06:47:20,473 | INFO     | aborting loop
[2026-05-02 08:48:08] 2026-05-02 06:47:20,892 | INFO     | all data control threads have been joined
[2026-05-02 08:48:08] 2026-05-02 06:47:20,956 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 08:48:08] 2026-05-02 06:47:21,291 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 08:48:08] 2026-05-02 06:47:21,457 | INFO     | [job] retrieve thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:21,479 | INFO     | [job] job monitor thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:21,838 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:21,877 | INFO     | all payload control threads have been joined
[2026-05-02 08:48:08] 2026-05-02 06:47:21,898 | INFO     | [data] control thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:21,959 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 08:48:08] 2026-05-02 06:47:21,975 | INFO     | [payload] failed_post thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:22,015 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:22,017 | INFO     | [data] copytool_in thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:22,040 | INFO     | all job control threads have been joined
[2026-05-02 08:48:08] 2026-05-02 06:47:22,142 | INFO     | [job] validate thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:22,408 | INFO     | [payload] validate_post thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:22,543 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:22,641 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:22,883 | INFO     | [payload] control thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:22,965 | INFO     | [job] queue monitor thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:23,046 | INFO     | [job] control thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:23,298 | INFO     | [data] copytool_out thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:24,965 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 08:48:08] 2026-05-02 06:47:49,975 | INFO     | PID=16785 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-02 08:48:08] 2026-05-02 06:47:49,976 | INFO     | .. there are 2 such processes running
[2026-05-02 08:48:08] 2026-05-02 06:47:49,977 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 08:48:08] 2026-05-02 06:47:49,977 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 08:48:08] 2026-05-02 06:47:49,977 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 08:48:08] 2026-05-02 06:47:57,583 | INFO     | [monitor] cgroup control has ended
[2026-05-02 08:48:08] 2026-05-02 06:47:58,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139874149947200)>', '<ExcThread(monitor, started 139873562375936)>']
[2026-05-02 08:48:08] 2026-05-02 06:47:59,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 08:48:08] 2026-05-02 06:47:59,031 | INFO     | [monitor] control thread has ended
[2026-05-02 08:48:08] 2026-05-02 06:48:03,550 | INFO     | all workflow threads have been joined
[2026-05-02 08:48:08] 2026-05-02 06:48:03,550 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 08:48:08] 2026-05-02 06:48:03,551 | INFO     | traces error code: 0
[2026-05-02 08:48:08] 2026-05-02 06:48:03,551 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 08:48:08] 2026-05-02 06:48:03,913 [wrapper] ==== pilot stdout END ====
[2026-05-02 08:48:08] 2026-05-02 06:48:04,004 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 08:48:08] 2026-05-02 06:48:04,096 [wrapper] pilotpid: 16785
[2026-05-02 08:48:08] 2026-05-02 06:48:04,124 [wrapper] Pilot exit status: 0
[2026-05-02 08:48:08] 2026-05-02 06:48:04,559 [wrapper] pandaids: 7120316944
[2026-05-02 08:48:08] 2026-05-02 06:48:05,800 [wrapper] cleanup supervisor_pilot 28225 16786
[2026-05-02 08:48:08] 2026-05-02 06:48:05,946 [wrapper] Test setup, not cleaning
[2026-05-02 08:48:08] 2026-05-02 06:48:06,097 [wrapper] apfmon messages muted
[2026-05-02 08:48:08] 2026-05-02 06:48:06,135 [wrapper] ==== wrapper stdout END ====
[2026-05-02 08:48:08] 2026-05-02 06:48:06,303 [wrapper] ==== wrapper stderr END ====
[2026-05-02 08:48:08]  *** Error codes and diagnostics ***
[2026-05-02 08:48:08]     "exeErrorCode": 0,
[2026-05-02 08:48:08]     "pilotErrorCode": 0,
[2026-05-02 08:48:08]  *** Listing of results directory ***
[2026-05-02 08:48:08] total 635592
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc    683926 May  1 13:26 pilot3.tar.gz
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc      5631 May  1 13:27 queuedata.json
[2026-05-02 08:48:08] -rwx------. 1 boinc boinc     36322 May  1 13:29 runpilot2-wrapper.sh
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc       100 May  2 04:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 08:48:08] -rwxr-xr-x. 1 boinc boinc      7986 May  2 04:38 run_atlas
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc       105 May  2 04:38 job.xml
[2026-05-02 08:48:08] -rw-r--r--. 2 boinc boinc 445068766 May  2 04:38 EVNT.46373187._000113.pool.root.1
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc      6307 May  2 04:38 init_data.xml
[2026-05-02 08:48:08] -rw-r--r--. 2 boinc boinc     15667 May  2 04:38 start_atlas.sh
[2026-05-02 08:48:08] drwxrwx--x. 2 boinc boinc        68 May  2 04:38 shared
[2026-05-02 08:48:08] -rw-r--r--. 2 boinc boinc    697429 May  2 04:38 input.tar.gz
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc         0 May  2 04:38 boinc_lockfile
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc      2594 May  2 04:38 pandaJob.out
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc   1002984 May  2 04:38 agis_schedconf.cvmfs.json
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc       415 May  2 04:38 workernode_map.json
[2026-05-02 08:48:08] drwx------. 5 boinc boinc      4096 May  2 04:38 pilot3
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc 198121031 May  2 08:45 HITS.49718416._016759.pool.root.1
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc       489 May  2 08:46 boinc_task_state.xml
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc      1015 May  2 08:47 memory_monitor_summary.json
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc   1508687 May  2 08:47 agis_ddmendpoints.agis.ALL.json
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc    387793 May  2 08:47 log.49718416._016759.job.log.tgz.1
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc      6348 May  2 08:47 heartbeat_new.json
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc      6239 May  2 08:47 heartbeat.json
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc        95 May  2 08:47 pilot_heartbeat.json
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc      4883 May  2 08:48 pilotlog.txt
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc        28 May  2 08:48 wrapper_checkpoint.txt
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc      8192 May  2 08:48 boinc_mmap_file
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc   1380815 May  2 08:48 log.49718416._016759.job.log.1
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc       357 May  2 08:48 output.list
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc       410 May  2 08:48 runtime_log
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc   1781760 May  2 08:48 result.tar.gz
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc      8439 May  2 08:48 runtime_log.err
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc       655 May  2 08:48 8eb0527ba43f.diag
[2026-05-02 08:48:08] -rw-r--r--. 1 boinc boinc     20865 May  2 08:48 stderr.txt
[2026-05-02 08:48:08] HITS file was successfully produced:
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc 198121031 May  2 08:45 shared/HITS.pool.root.1
[2026-05-02 08:48:08]  *** Contents of shared directory: ***
[2026-05-02 08:48:08] total 630560
[2026-05-02 08:48:08] -rw-r--r--. 2 boinc boinc 445068766 May  2 04:38 ATLAS.root_0
[2026-05-02 08:48:08] -rw-r--r--. 2 boinc boinc     15667 May  2 04:38 start_atlas.sh
[2026-05-02 08:48:08] -rw-r--r--. 2 boinc boinc    697429 May  2 04:38 input.tar.gz
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc 198121031 May  2 08:45 HITS.pool.root.1
[2026-05-02 08:48:08] -rw-------. 1 boinc boinc   1781760 May  2 08:48 result.tar.gz
08:48:10 (12909): run_atlas exited; CPU time 57982.779937
08:48:10 (12909): called boinc_finish(0)

</stderr_txt>
]]>

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