Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:45:22 (3121919): wrapper (7.7.26015): starting
01:45:22 (3121919): wrapper: running run_atlas (--nthreads 3)
[2026-05-02 01:45:22] Arguments: --nthreads 3
[2026-05-02 01:45:22] Threads: 3
[2026-05-02 01:45:22] Checking for CVMFS
[2026-05-02 01:45:22] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-02 01:45:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-02 01:45:22] Running cvmfs_config stat atlas.cern.ch
[2026-05-02 01:45:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-02 01:45:22] 2.9.2.0 2774710 2463 79756 159112 2 50 35467371 36864001 0 130560 0 1326139 99.984 102559 12776 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-05-02 01:45:22] CVMFS is ok
[2026-05-02 01:45:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-02 01:45:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-02 01:45:22] Further information can be found at the LHC@home message board.
[2026-05-02 01:45:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 01:45:22] Checking for apptainer binary...
[2026-05-02 01:45:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-02 01:45:22] Running /usr/bin/apptainer --version
[2026-05-02 01:45:22] apptainer version 1.4.1-1.1
[2026-05-02 01:45:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 01:45:22] thA335a
[2026-05-02 01:45:22] apptainer works
[2026-05-02 01:45:22] Set ATHENA_PROC_NUMBER=3
[2026-05-02 01:45:22] Set ATHENA_CORE_NUMBER=3
[2026-05-02 01:45:22] Starting ATLAS job with PandaID=7119957290
[2026-05-02 01:45:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 03:12:45]  *** The last 200 lines of the pilot log: ***
[2026-05-02 03:12:45] 2026-05-02 01:12:10,396 | INFO     | overall cleanup function is called
[2026-05-02 03:12:45] 2026-05-02 01:12:11,403 | INFO     | --- collectZombieJob: --- 10, [3130396]
[2026-05-02 03:12:45] 2026-05-02 01:12:11,403 | INFO     | zombie collector waiting for pid 3130396
[2026-05-02 03:12:45] 2026-05-02 01:12:11,403 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 03:12:45] 2026-05-02 01:12:11,403 | INFO     | collected zombie processes
[2026-05-02 03:12:45] 2026-05-02 01:12:11,403 | INFO     | will attempt to kill all subprocesses of pid=3130396
[2026-05-02 03:12:45] 2026-05-02 01:12:11,435 | INFO     | process IDs to be killed: [3130396] (in reverse order)
[2026-05-02 03:12:45] 2026-05-02 01:12:11,460 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 03:12:45] 2026-05-02 01:12:11,460 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 03:12:45] 2026-05-02 01:12:11,462 | INFO     | did not find any defunct processes belonging to 3130396
[2026-05-02 03:12:45] 2026-05-02 01:12:11,463 | INFO     | did not find any defunct processes belonging to 3130396
[2026-05-02 03:12:45] 2026-05-02 01:12:11,463 | INFO     | Ready for new job
[2026-05-02 03:12:45] 2026-05-02 01:12:11,463 | INFO     | ***************************************
[2026-05-02 03:12:45] 2026-05-02 01:12:11,464 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 03:12:45] 2026-05-02 01:12:11,464 | INFO     | ***************************************
[2026-05-02 03:12:45] 2026-05-02 01:12:11,464 | INFO     | 
[2026-05-02 03:12:45] 2026-05-02 01:12:11,464 | INFO     | architecture information:
[2026-05-02 03:12:45] 2026-05-02 01:12:11,464 | INFO     | executing command: cat /etc/os-release
[2026-05-02 03:12:45] 2026-05-02 01:12:11,473 | INFO     | cat /etc/os-release:
[2026-05-02 03:12:45] NAME="CentOS Linux"
[2026-05-02 03:12:45] VERSION="7 (Core)"
[2026-05-02 03:12:45] ID="centos"
[2026-05-02 03:12:45] ID_LIKE="rhel fedora"
[2026-05-02 03:12:45] VERSION_ID="7"
[2026-05-02 03:12:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 03:12:45] ANSI_COLOR="0;31"
[2026-05-02 03:12:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 03:12:45] HOME_URL="https://www.centos.org/"
[2026-05-02 03:12:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 03:12:45] 
[2026-05-02 03:12:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 03:12:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 03:12:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 03:12:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 03:12:45] 
[2026-05-02 03:12:45] 2026-05-02 01:12:11,474 | INFO     | ***************************************
[2026-05-02 03:12:45] 2026-05-02 01:12:11,976 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-05-02 03:12:45] 2026-05-02 01:12:11,990 | INFO     | sufficient remaining disk space (367667445760 B)
[2026-05-02 03:12:45] 2026-05-02 01:12:11,990 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 03:12:45] 2026-05-02 01:12:11,990 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 03:12:45] 2026-05-02 01:12:11,990 | INFO     | update_server=False
[2026-05-02 03:12:45] 2026-05-02 01:12:11,990 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 03:12:45] 2026-05-02 01:12:11,990 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 03:12:45] 2026-05-02 01:12:11,990 | INFO     | aborting loop
[2026-05-02 03:12:45] 2026-05-02 01:12:11,990 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 03:12:45] 2026-05-02 01:12:11,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 03:12:45] 2026-05-02 01:12:12,479 | INFO     | all job control threads have been joined
[2026-05-02 03:12:45] 2026-05-02 01:12:12,752 | INFO     | all payload control threads have been joined
[2026-05-02 03:12:45] 2026-05-02 01:12:12,994 | INFO     | all data control threads have been joined
[2026-05-02 03:12:45] 2026-05-02 01:12:12,994 | INFO     | [job] queue monitor thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:12,994 | INFO     | [job] retrieve thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:12,995 | INFO     | [job] job monitor thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:13,444 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 03:12:45] 2026-05-02 01:12:13,485 | INFO     | [job] control thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:13,634 | INFO     | [job] validate thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:13,709 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:13,757 | INFO     | [payload] control thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:13,770 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:13,808 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:13,808 | INFO     | [data] copytool_in thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:13,996 | INFO     | [data] copytool_out thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:13,999 | INFO     | [data] control thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:14,299 | INFO     | [payload] validate_post thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:14,598 | INFO     | [payload] failed_post thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:17,451 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:23,036 | INFO     | job.realtimelogging is not enabled
[2026-05-02 03:12:45] 2026-05-02 01:12:24,041 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 03:12:45] 2026-05-02 01:12:39,560 | INFO     | [monitor] cgroup control has ended
[2026-05-02 03:12:45] 2026-05-02 01:12:40,015 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140370432296768)>', '<ExcThread(monitor, started 140369060689664)>']
[2026-05-02 03:12:45] 2026-05-02 01:12:42,103 | INFO     | PID=3125966 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-02 03:12:45] 2026-05-02 01:12:42,104 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 03:12:45] 2026-05-02 01:12:42,104 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 03:12:45] 2026-05-02 01:12:42,104 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 03:12:45] 2026-05-02 01:12:42,104 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 03:12:45] 2026-05-02 01:12:42,104 | INFO     | [monitor] control thread has ended
[2026-05-02 03:12:45] 2026-05-02 01:12:45,040 | INFO     | all workflow threads have been joined
[2026-05-02 03:12:45] 2026-05-02 01:12:45,041 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 03:12:45] 2026-05-02 01:12:45,041 | INFO     | traces error code: 0
[2026-05-02 03:12:45] 2026-05-02 01:12:45,041 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 03:12:45] 2026-05-02 01:12:45,089 [wrapper] ==== pilot stdout END ====
[2026-05-02 03:12:45] 2026-05-02 01:12:45,092 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 03:12:45] 2026-05-02 01:12:45,094 [wrapper] pilotpid: 3125966
[2026-05-02 03:12:45] 2026-05-02 01:12:45,097 [wrapper] Pilot exit status: 0
[2026-05-02 03:12:45] 2026-05-02 01:12:45,105 [wrapper] pandaids: 7119957290
[2026-05-02 03:12:45] 2026-05-02 01:12:45,121 [wrapper] cleanup supervisor_pilot 3135803 3125967
[2026-05-02 03:12:45] 2026-05-02 01:12:45,124 [wrapper] Test setup, not cleaning
[2026-05-02 03:12:45] 2026-05-02 01:12:45,127 [wrapper] apfmon messages muted
[2026-05-02 03:12:45] 2026-05-02 01:12:45,129 [wrapper] ==== wrapper stdout END ====
[2026-05-02 03:12:45] 2026-05-02 01:12:45,132 [wrapper] ==== wrapper stderr END ====
[2026-05-02 03:12:45]  *** Error codes and diagnostics ***
[2026-05-02 03:12:45]     "exeErrorCode": 0,
[2026-05-02 03:12:45]     "pilotErrorCode": 0,
[2026-05-02 03:12:45]  *** Listing of results directory ***
[2026-05-02 03:12:45] total 630336
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc    683926 May  1 09:25 pilot3.tar.gz
[2026-05-02 03:12:45] -rwx------ 1 boinc boinc     36322 May  1 09:25 runpilot2-wrapper.sh
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc      5631 May  1 09:25 queuedata.json
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc       100 May  2 01:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 03:12:45] -rwxr-xr-x 1 boinc boinc      7986 May  2 01:45 run_atlas
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc       105 May  2 01:45 job.xml
[2026-05-02 03:12:45] -rw-r--r-- 2 boinc boinc 445724327 May  2 01:45 EVNT.46373187._000038.pool.root.1
[2026-05-02 03:12:45] -rw-r--r-- 2 boinc boinc    697422 May  2 01:45 input.tar.gz
[2026-05-02 03:12:45] -rw-r--r-- 2 boinc boinc     15667 May  2 01:45 start_atlas.sh
[2026-05-02 03:12:45] drwxrwx--x 2 boinc boinc      4096 May  2 01:45 shared
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc         0 May  2 01:45 boinc_setup_complete
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc      6363 May  2 01:45 init_data.xml
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc         0 May  2 01:45 boinc_lockfile
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc      2594 May  2 01:45 pandaJob.out
[2026-05-02 03:12:45] -rw------- 1 boinc boinc   1002968 May  2 01:45 agis_schedconf.cvmfs.json
[2026-05-02 03:12:45] -rw------- 1 boinc boinc   1508687 May  2 01:45 agis_ddmendpoints.agis.ALL.json
[2026-05-02 03:12:45] -rw------- 1 boinc boinc       414 May  2 01:45 workernode_map.json
[2026-05-02 03:12:45] drwx------ 5 boinc boinc      4096 May  2 01:45 pilot3
[2026-05-02 03:12:45] -rw------- 1 boinc boinc 194142038 May  2 03:11 HITS.49718416._012991.pool.root.1
[2026-05-02 03:12:45] -rw------- 1 boinc boinc        95 May  2 03:11 pilot_heartbeat.json
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc       488 May  2 03:11 boinc_task_state.xml
[2026-05-02 03:12:45] -rw------- 1 boinc boinc      1014 May  2 03:12 memory_monitor_summary.json
[2026-05-02 03:12:45] -rw------- 1 boinc boinc    228074 May  2 03:12 log.49718416._012991.job.log.tgz.1
[2026-05-02 03:12:45] -rw------- 1 boinc boinc      6305 May  2 03:12 heartbeat_new.json
[2026-05-02 03:12:45] -rw------- 1 boinc boinc      6196 May  2 03:12 heartbeat.json
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc      8192 May  2 03:12 boinc_mmap_file
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc        27 May  2 03:12 wrapper_checkpoint.txt
[2026-05-02 03:12:45] -rw------- 1 boinc boinc      4823 May  2 03:12 pilotlog.txt
[2026-05-02 03:12:45] -rw------- 1 boinc boinc    507849 May  2 03:12 log.49718416._012991.job.log.1
[2026-05-02 03:12:45] -rw------- 1 boinc boinc       357 May  2 03:12 output.list
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc       410 May  2 03:12 runtime_log
[2026-05-02 03:12:45] -rw------- 1 boinc boinc    757760 May  2 03:12 result.tar.gz
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc      8524 May  2 03:12 runtime_log.err
[2026-05-02 03:12:45] -rw------- 1 boinc boinc       658 May  2 03:12 5563c0f047d7.diag
[2026-05-02 03:12:45] -rw-r--r-- 1 boinc boinc     10587 May  2 03:12 stderr.txt
[2026-05-02 03:12:45] HITS file was successfully produced:
[2026-05-02 03:12:45] -rw------- 1 boinc boinc 194142038 May  2 03:11 shared/HITS.pool.root.1
[2026-05-02 03:12:45]  *** Contents of shared directory: ***
[2026-05-02 03:12:45] total 626320
[2026-05-02 03:12:45] -rw-r--r-- 2 boinc boinc 445724327 May  2 01:45 ATLAS.root_0
[2026-05-02 03:12:45] -rw-r--r-- 2 boinc boinc    697422 May  2 01:45 input.tar.gz
[2026-05-02 03:12:45] -rw-r--r-- 2 boinc boinc     15667 May  2 01:45 start_atlas.sh
[2026-05-02 03:12:45] -rw------- 1 boinc boinc 194142038 May  2 03:11 HITS.pool.root.1
[2026-05-02 03:12:45] -rw------- 1 boinc boinc    757760 May  2 03:12 result.tar.gz
03:12:46 (3121919): run_atlas exited; CPU time 14237.834420
03:12:46 (3121919): called boinc_finish(0)

</stderr_txt>
]]>

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