Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:00:03 (32199): wrapper (7.7.26015): starting
05:00:03 (32199): wrapper: running run_atlas (--nthreads 12)
[2026-05-01 05:00:03] Arguments: --nthreads 12
[2026-05-01 05:00:03] Threads: 12
[2026-05-01 05:00:03] Checking for CVMFS
[2026-05-01 05:00:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-01 05:00:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-01 05:00:04] Running cvmfs_config stat atlas.cern.ch
[2026-05-01 05:00:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-01 05:00:04] 2.11.2.0 14820 367458 87032 159084 2 52 14975443 20275200 1 130560 0 153256010 99.942 17493587 30497 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-05-01 05:00:04] CVMFS is ok
[2026-05-01 05:00:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-01 05:00:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-01 05:00:04] Further information can be found at the LHC@home message board.
[2026-05-01 05:00:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 05:00:04] Checking for apptainer binary...
[2026-05-01 05:00:04] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-01 05:00:04] Running /usr/bin/apptainer --version
[2026-05-01 05:00:04] apptainer version 1.3.2-1.el7
[2026-05-01 05:00:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 05:00:06] c-205-27.aglt2.org
[2026-05-01 05:00:06] apptainer works
[2026-05-01 05:00:06] Set ATHENA_PROC_NUMBER=12
[2026-05-01 05:00:06] Set ATHENA_CORE_NUMBER=12
[2026-05-01 05:00:06] Starting ATLAS job with PandaID=7119931240
[2026-05-01 05:00:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 06:14:41]  *** The last 200 lines of the pilot log: ***
[2026-05-01 06:14:41]  mtime=0
[2026-05-01 06:14:41]  protocol_id=None
[2026-05-01 06:14:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-01 06:14:41]  replicas=None
[2026-05-01 06:14:41]  scope=mc23_13p6TeV
[2026-05-01 06:14:41]  status=None
[2026-05-01 06:14:41]  status_code=0
[2026-05-01 06:14:41]  storage_token=
[2026-05-01 06:14:41]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7119931240/log.49263191._085798.job.log.tgz.1
[2026-05-01 06:14:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/12/log.49263191._085798.job.log.tgz.1
[2026-05-01 06:14:41]  workdir=None
[2026-05-01 06:14:41] ]
[2026-05-01 06:14:41] 2026-05-01 10:13:47,357 | INFO     | transferring file log.49263191._085798.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7119931240/log.49263191._085798.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-05-01 06:14:41] 2026-05-01 10:13:47,357 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7119931240/log.49263191._085798.job.log.tgz.1 /tmp/boinchome/slots/0/log.49263191._085798.job
[2026-05-01 06:14:41] 2026-05-01 10:13:47,379 | INFO     | adding to output.list: log.49263191._085798.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a0/12/log.49263191._085798.job.log.tg
[2026-05-01 06:14:41] 2026-05-01 10:13:47,379 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-01 06:14:41] 2026-05-01 10:13:47,380 | INFO     | summary of transferred files:
[2026-05-01 06:14:41] 2026-05-01 10:13:47,380 | INFO     |  -- lfn=log.49263191._085798.job.log.tgz.1, status_code=0, status=transferred
[2026-05-01 06:14:41] 2026-05-01 10:13:47,380 | INFO     | stage-out finished correctly
[2026-05-01 06:14:41] 2026-05-01 10:13:47,636 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-01 06:14:41] 2026-05-01 10:13:47,713 | INFO     | job 7119931240 has state=finished
[2026-05-01 06:14:41] 2026-05-01 10:13:47,713 | INFO     | preparing for final server update for job 7119931240 in state='finished'
[2026-05-01 06:14:41] 2026-05-01 10:13:47,779 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-05-01 06:14:41] 2026-05-01 10:13:47,780 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7119931240/jobReport.json
[2026-05-01 06:14:41] 2026-05-01 10:13:47,782 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-05-01 06:14:41] 2026-05-01 10:13:47,783 | INFO     | this job has now completed (state=finished)
[2026-05-01 06:14:41] 2026-05-01 10:13:47,783 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-01 06:14:41] 2026-05-01 10:13:47,783 | INFO     | log transfer has been attempted: DONE
[2026-05-01 06:14:41] 2026-05-01 10:13:47,783 | INFO     | job 7119931240 has finished - writing final server update
[2026-05-01 06:14:41] 2026-05-01 10:13:47,784 | INFO     | total number of processed events: 400 (read)
[2026-05-01 06:14:41] 2026-05-01 10:13:47,786 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7119931240/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 06:14:41] 2026-05-01 10:13:47,787 | INFO     | extracted standard info from prmon json
[2026-05-01 06:14:41] 2026-05-01 10:13:47,787 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 06:14:41] 2026-05-01 10:13:47,787 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 06:14:41] 2026-05-01 10:13:47,788 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 06:14:41] 2026-05-01 10:13:47,789 | INFO     | fitting pss+swap vs Time
[2026-05-01 06:14:41] 2026-05-01 10:13:47,789 | INFO     | sum of square deviations: 85136480.0
[2026-05-01 06:14:41] 2026-05-01 10:13:47,790 | INFO     | sum of deviations: -1581056681.9999995
[2026-05-01 06:14:41] 2026-05-01 10:13:47,790 | INFO     | mean x (centered): 0.0
[2026-05-01 06:14:41] 2026-05-01 10:13:47,790 | INFO     | mean y: 2689269.123076923
[2026-05-01 06:14:41] 2026-05-01 10:13:47,790 | INFO     | intersect: 2689269.123076923
[2026-05-01 06:14:41] 2026-05-01 10:13:47,790 | INFO     | chi2: 0.05360205504648994
[2026-05-01 06:14:41] 2026-05-01 10:13:47,790 | INFO     | current memory leak: -18.57 B/s (using 65 data points, chi2=0.05)
[2026-05-01 06:14:41] 2026-05-01 10:13:47,790 | INFO     | could have reported an average CPU frequency of 1773 MHz (6 samples)
[2026-05-01 06:14:41] 2026-05-01 10:13:47,791 | INFO     | ..............................
[2026-05-01 06:14:41] 2026-05-01 10:13:47,791 | INFO     | . Timing measurements:
[2026-05-01 06:14:41] 2026-05-01 10:13:47,791 | INFO     | . get job = 0 s
[2026-05-01 06:14:41] 2026-05-01 10:13:47,791 | INFO     | . initial setup = 7 s
[2026-05-01 06:14:41] 2026-05-01 10:13:47,791 | INFO     | . payload setup = 14 s
[2026-05-01 06:14:41] 2026-05-01 10:13:47,791 | INFO     | . stage-in = 0 s
[2026-05-01 06:14:41] 2026-05-01 10:13:47,791 | INFO     | . payload execution = 4369 s
[2026-05-01 06:14:41] 2026-05-01 10:13:47,791 | INFO     | . stage-out = 0 s
[2026-05-01 06:14:41] 2026-05-01 10:13:47,791 | INFO     | . log creation = 0 s
[2026-05-01 06:14:41] 2026-05-01 10:13:47,792 | INFO     | ..............................
[2026-05-01 06:14:41] 2026-05-01 10:13:48,252 | INFO     | 
[2026-05-01 06:14:41] 2026-05-01 10:13:48,252 | INFO     | job summary report
[2026-05-01 06:14:41] 2026-05-01 10:13:48,252 | INFO     | --------------------------------------------------
[2026-05-01 06:14:41] 2026-05-01 10:13:48,252 | INFO     | PanDA job id: 7119931240
[2026-05-01 06:14:41] 2026-05-01 10:13:48,253 | INFO     | task id: 49263191
[2026-05-01 06:14:41] 2026-05-01 10:13:48,253 | INFO     | errors: (none)
[2026-05-01 06:14:41] 2026-05-01 10:13:48,253 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 06:14:41] 2026-05-01 10:13:48,253 | INFO     | pilot state: finished 
[2026-05-01 06:14:41] 2026-05-01 10:13:48,253 | INFO     | transexitcode: 0
[2026-05-01 06:14:41] 2026-05-01 10:13:48,253 | INFO     | exeerrorcode: 0
[2026-05-01 06:14:41] 2026-05-01 10:13:48,254 | INFO     | exeerrordiag: 
[2026-05-01 06:14:41] 2026-05-01 10:13:48,254 | INFO     | exitcode: 0
[2026-05-01 06:14:41] 2026-05-01 10:13:48,254 | INFO     | exitmsg: OK
[2026-05-01 06:14:41] 2026-05-01 10:13:48,254 | INFO     | cpuconsumptiontime: 45378 s
[2026-05-01 06:14:41] 2026-05-01 10:13:48,254 | INFO     | nevents: 400
[2026-05-01 06:14:41] 2026-05-01 10:13:48,254 | INFO     | neventsw: 0
[2026-05-01 06:14:41] 2026-05-01 10:13:48,254 | INFO     | pid: 8380
[2026-05-01 06:14:41] 2026-05-01 10:13:48,255 | INFO     | pgrp: 8380
[2026-05-01 06:14:41] 2026-05-01 10:13:48,255 | INFO     | corecount: 12
[2026-05-01 06:14:41] 2026-05-01 10:13:48,255 | INFO     | event service: False
[2026-05-01 06:14:41] 2026-05-01 10:13:48,255 | INFO     | sizes: {0: 2278383, 11: 2278383, 4387: 2304508, 4388: 2313700}
[2026-05-01 06:14:41] 2026-05-01 10:13:48,255 | INFO     | --------------------------------------------------
[2026-05-01 06:14:41] 2026-05-01 10:13:48,255 | INFO     | 
[2026-05-01 06:14:41] 2026-05-01 10:13:48,256 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-05-01 06:14:41] 2026-05-01 10:13:48,280 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,281 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,281 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,281 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,281 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,282 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,282 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,282 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,282 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,282 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,282 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,283 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,283 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,283 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,283 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,283 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,283 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,284 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 06:14:41] 2026-05-01 10:13:48,284 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,284 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 06:14:41] 2026-05-01 10:13:48,284 | INFO     | job 7119931240 has completed (purged errors)
[2026-05-01 06:14:41] 2026-05-01 10:13:48,284 | INFO     | overall cleanup function is called
[2026-05-01 06:14:41] 2026-05-01 10:13:49,293 | INFO     | --- collectZombieJob: --- 10, [8380]
[2026-05-01 06:14:41] 2026-05-01 10:13:49,293 | INFO     | zombie collector waiting for pid 8380
[2026-05-01 06:14:41] 2026-05-01 10:13:49,293 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 06:14:41] 2026-05-01 10:13:49,294 | INFO     | collected zombie processes
[2026-05-01 06:14:41] 2026-05-01 10:13:49,294 | INFO     | will attempt to kill all subprocesses of pid=8380
[2026-05-01 06:14:41] 2026-05-01 10:13:49,367 | INFO     | process IDs to be killed: [8380] (in reverse order)
[2026-05-01 06:14:41] 2026-05-01 10:13:49,418 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 06:14:41] 2026-05-01 10:13:49,418 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 06:14:41] 2026-05-01 10:13:49,422 | INFO     | did not find any defunct processes belonging to 8380
[2026-05-01 06:14:41] 2026-05-01 10:13:49,425 | INFO     | did not find any defunct processes belonging to 8380
[2026-05-01 06:14:41] 2026-05-01 10:13:49,425 | INFO     | Ready for new job
[2026-05-01 06:14:41] 2026-05-01 10:13:49,426 | INFO     | ***************************************
[2026-05-01 06:14:41] 2026-05-01 10:13:49,427 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 06:14:41] 2026-05-01 10:13:49,427 | INFO     | ***************************************
[2026-05-01 06:14:41] 2026-05-01 10:13:49,427 | INFO     | 
[2026-05-01 06:14:41] 2026-05-01 10:13:49,428 | INFO     | architecture information:
[2026-05-01 06:14:41] 2026-05-01 10:13:49,428 | INFO     | executing command: cat /etc/os-release
[2026-05-01 06:14:41] 2026-05-01 10:13:49,443 | INFO     | cat /etc/os-release:
[2026-05-01 06:14:41] NAME="CentOS Linux"
[2026-05-01 06:14:41] VERSION="7 (Core)"
[2026-05-01 06:14:41] ID="centos"
[2026-05-01 06:14:41] ID_LIKE="rhel fedora"
[2026-05-01 06:14:41] VERSION_ID="7"
[2026-05-01 06:14:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 06:14:41] ANSI_COLOR="0;31"
[2026-05-01 06:14:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 06:14:41] HOME_URL="https://www.centos.org/"
[2026-05-01 06:14:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 06:14:41] 
[2026-05-01 06:14:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 06:14:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 06:14:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 06:14:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 06:14:41] 
[2026-05-01 06:14:41] 2026-05-01 10:13:49,443 | INFO     | ***************************************
[2026-05-01 06:14:41] 2026-05-01 10:13:49,946 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-05-01 06:14:41] 2026-05-01 10:13:49,963 | INFO     | sufficient remaining disk space (29319233536 B)
[2026-05-01 06:14:41] 2026-05-01 10:13:49,963 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 06:14:41] 2026-05-01 10:13:49,963 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 06:14:41] 2026-05-01 10:13:49,964 | INFO     | update_server=False
[2026-05-01 06:14:41] 2026-05-01 10:13:49,964 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 06:14:41] 2026-05-01 10:13:49,964 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 06:14:41] 2026-05-01 10:13:50,083 | INFO     | all payload control threads have been joined
[2026-05-01 06:14:41] 2026-05-01 10:13:50,174 | INFO     | all data control threads have been joined
[2026-05-01 06:14:41] 2026-05-01 10:13:50,467 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 06:14:41] 2026-05-01 10:13:50,969 | INFO     | [job] retrieve thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:51,018 | INFO     | [job] validate thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:51,029 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:51,088 | INFO     | [payload] control thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:51,179 | INFO     | [data] control thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:51,188 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:51,480 | INFO     | all job control threads have been joined
[2026-05-01 06:14:41] 2026-05-01 10:13:51,498 | INFO     | [data] copytool_in thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:51,689 | INFO     | [payload] failed_post thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:51,981 | WARNING  | process 8380 can no longer be monitored (due to stat problems) - aborting
[2026-05-01 06:14:41] 2026-05-01 10:13:52,049 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 06:14:41] 2026-05-01 10:13:52,050 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 06:14:41] 2026-05-01 10:13:52,050 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:52,051 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-05-01 06:14:41] 2026-05-01 10:13:52,051 | WARNING  | maxPSS not found in memory monitor output
[2026-05-01 06:14:41] 2026-05-01 10:13:52,051 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-7119931240/payload.stdout) since it has not been created yet
[2026-05-01 06:14:41] 2026-05-01 10:13:52,052 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-05-01 06:14:41] 2026-05-01 10:13:52,067 | INFO     | sufficient remaining disk space (29319233536 B)
[2026-05-01 06:14:41] 2026-05-01 10:13:52,068 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-05-01 06:14:41] 2026-05-01 10:13:52,068 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-7119931240/HITS.49263191._085798.pool.root.1 since it does not exist
[2026-05-01 06:14:41] 2026-05-01 10:13:52,141 | INFO     | number of running child processes to parent process 8380: 1
[2026-05-01 06:14:41] 2026-05-01 10:13:52,141 | INFO     | maximum number of monitored processes: 6
[2026-05-01 06:14:41] 2026-05-01 10:13:52,141 | INFO     | aborting job monitoring since job object (job id=7119931240) has expired
[2026-05-01 06:14:41] 2026-05-01 10:13:52,142 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 06:14:41] 2026-05-01 10:13:52,142 | INFO     | will abort loop
[2026-05-01 06:14:41] 2026-05-01 10:13:52,368 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:52,431 | INFO     | [payload] validate_post thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:52,472 | INFO     | [data] copytool_out thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:52,486 | INFO     | [job] control thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:52,879 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 06:14:41] 2026-05-01 10:13:53,147 | INFO     | [job] job monitor thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:53,880 | INFO     | [job] queue monitor thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:13:53,970 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 06:14:41] 2026-05-01 10:14:20,140 | INFO     | PID=3991 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-05-01 06:14:41] 2026-05-01 10:14:20,141 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 06:14:41] 2026-05-01 10:14:20,141 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 06:14:41] 2026-05-01 10:14:20,141 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 06:14:41] 2026-05-01 10:14:34,902 | INFO     | [monitor] cgroup control has ended
[2026-05-01 06:14:41] 2026-05-01 10:14:36,013 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140454098683712)>', '<ExcThread(monitor, started 140453508785920)>']
[2026-05-01 06:14:41] 2026-05-01 10:14:36,223 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 06:14:41] 2026-05-01 10:14:36,223 | INFO     | [monitor] control thread has ended
[2026-05-01 06:14:41] 2026-05-01 10:14:41,020 | INFO     | all workflow threads have been joined
[2026-05-01 06:14:41] 2026-05-01 10:14:41,020 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 06:14:41] 2026-05-01 10:14:41,020 | INFO     | traces error code: 0
[2026-05-01 06:14:41] 2026-05-01 10:14:41,021 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 06:14:41] 2026-05-01 10:14:41,112 [wrapper] ==== pilot stdout END ====
[2026-05-01 06:14:41] 2026-05-01 10:14:41,117 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 06:14:41] 2026-05-01 10:14:41,121 [wrapper] pilotpid: 3991
[2026-05-01 06:14:41] 2026-05-01 10:14:41,124 [wrapper] Pilot exit status: 0
[2026-05-01 06:14:41] 2026-05-01 10:14:41,140 [wrapper] pandaids: 7119931240
[2026-05-01 06:14:41] 2026-05-01 10:14:41,185 [wrapper] cleanup supervisor_pilot 26597 3992
[2026-05-01 06:14:41] 2026-05-01 10:14:41,189 [wrapper] Test setup, not cleaning
[2026-05-01 06:14:41] 2026-05-01 10:14:41,192 [wrapper] apfmon messages muted
[2026-05-01 06:14:41] 2026-05-01 10:14:41,196 [wrapper] ==== wrapper stdout END ====
[2026-05-01 06:14:41] 2026-05-01 10:14:41,200 [wrapper] ==== wrapper stderr END ====
[2026-05-01 06:14:41]  *** Error codes and diagnostics ***
[2026-05-01 06:14:41]     "exeErrorCode": 0,
[2026-05-01 06:14:41]     "pilotErrorCode": 0,
[2026-05-01 06:14:41]  *** Listing of results directory ***
[2026-05-01 06:14:41] total 408704
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas    683926 May  1 02:48 pilot3.tar.gz
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas      5631 May  1 02:55 queuedata.json
[2026-05-01 06:14:41] -rwx------ 1 boincer umatlas     36322 May  1 02:55 runpilot2-wrapper.sh
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas       100 May  1 05:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 06:14:41] -rwxr-xr-x 1 boincer umatlas      7986 May  1 05:00 run_atlas
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas       105 May  1 05:00 job.xml
[2026-05-01 06:14:41] -rw-r--r-- 2 boincer umatlas 222516955 May  1 05:00 EVNT.49263189._001846.pool.root.1
[2026-05-01 06:14:41] -rw-r--r-- 2 boincer umatlas     15667 May  1 05:00 start_atlas.sh
[2026-05-01 06:14:41] drwxrwx--x 2 boincer umatlas      4096 May  1 05:00 shared
[2026-05-01 06:14:41] -rw-r--r-- 2 boincer umatlas    697422 May  1 05:00 input.tar.gz
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas         0 May  1 05:00 boinc_lockfile
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas      2576 May  1 05:00 pandaJob.out
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas        57 May  1 05:00 setup.sh.local
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas   1002922 May  1 05:00 agis_schedconf.cvmfs.json
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas   1510091 May  1 05:00 agis_ddmendpoints.agis.ALL.json
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas       445 May  1 05:00 workernode_map.json
[2026-05-01 06:14:41] drwx------ 5 boincer umatlas      4096 May  1 05:00 pilot3
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas      5869 May  1 06:12 init_data.xml
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas       487 May  1 06:13 boinc_task_state.xml
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas 190250848 May  1 06:13 HITS.49263191._085798.pool.root.1
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas      1043 May  1 06:13 memory_monitor_summary.json
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas    372750 May  1 06:13 log.49263191._085798.job.log.tgz.1
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas      6441 May  1 06:13 heartbeat_new.json
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas      6332 May  1 06:13 heartbeat.json
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas        95 May  1 06:14 pilot_heartbeat.json
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas        27 May  1 06:14 wrapper_checkpoint.txt
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas      8192 May  1 06:14 boinc_mmap_file
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas      6223 May  1 06:14 pilotlog.txt
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas    430770 May  1 06:14 log.49263191._085798.job.log.1
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas       357 May  1 06:14 output.list
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas       410 May  1 06:14 runtime_log
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas    819200 May  1 06:14 result.tar.gz
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas      8966 May  1 06:14 runtime_log.err
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas       659 May  1 06:14 4e6497d369da.diag
[2026-05-01 06:14:41] -rw-r--r-- 1 boincer umatlas     21778 May  1 06:14 stderr.txt
[2026-05-01 06:14:41] HITS file was successfully produced:
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas 190250848 May  1 06:13 shared/HITS.pool.root.1
[2026-05-01 06:14:41]  *** Contents of shared directory: ***
[2026-05-01 06:14:41] total 404600
[2026-05-01 06:14:41] -rw-r--r-- 2 boincer umatlas 222516955 May  1 05:00 ATLAS.root_0
[2026-05-01 06:14:41] -rw-r--r-- 2 boincer umatlas     15667 May  1 05:00 start_atlas.sh
[2026-05-01 06:14:41] -rw-r--r-- 2 boincer umatlas    697422 May  1 05:00 input.tar.gz
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas 190250848 May  1 06:13 HITS.pool.root.1
[2026-05-01 06:14:41] -rw------- 1 boincer umatlas    819200 May  1 06:14 result.tar.gz
06:14:43 (32199): run_atlas exited; CPU time 45355.877071
06:14:43 (32199): called boinc_finish(0)

</stderr_txt>
]]>

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