Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
11:44:44 (2711276): wrapper (7.7.26015): starting
11:44:44 (2711276): wrapper: running run_atlas (--nthreads 4)
[2026-05-04 11:44:44] Arguments: --nthreads 4
[2026-05-04 11:44:44] Threads: 4
[2026-05-04 11:44:44] Checking for CVMFS
[2026-05-04 11:44:44] No cvmfs_config command found, will try listing directly
[2026-05-04 11:44:44] CVMFS is ok
[2026-05-04 11:44:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-04 11:44:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-04 11:44:44] Further information can be found at the LHC@home message board.
[2026-05-04 11:44:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-04 11:44:44] Checking for apptainer binary...
[2026-05-04 11:44:44] which: no apptainer in ((null))
[2026-05-04 11:44:44] apptainer is not installed, using version from CVMFS
[2026-05-04 11:44:44] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-04 11:44:44] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot48/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut16.grid.cesnet.cz
[2026-05-04 11:44:44] apptainer works
[2026-05-04 11:44:44] Set ATHENA_PROC_NUMBER=4
[2026-05-04 11:44:44] Set ATHENA_CORE_NUMBER=4
[2026-05-04 11:44:44] Starting ATLAS job with PandaID=7119649463
[2026-05-04 11:44:44] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot48/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-04 14:41:34]  *** The last 200 lines of the pilot log: ***
[2026-05-04 14:41:34] 2026-05-04 12:39:40,638 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1852680/.job.ad'
[2026-05-04 14:41:34] 2026-05-04 12:39:40,639 | INFO     | total number of processed events: 400 (read)
[2026-05-04 14:41:34] 2026-05-04 12:39:40,671 | INFO     | using path: /var/lib/boinc/var/slot48/slots/3/PanDA_Pilot-7119649463/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 14:41:34] 2026-05-04 12:39:40,672 | INFO     | extracted standard info from prmon json
[2026-05-04 14:41:34] 2026-05-04 12:39:40,672 | INFO     | extracted standard memory fields from prmon json
[2026-05-04 14:41:34] 2026-05-04 12:39:40,672 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-04 14:41:34] 2026-05-04 12:39:40,672 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-04 14:41:34] 2026-05-04 12:39:40,675 | INFO     | fitting pss+swap vs Time
[2026-05-04 14:41:34] 2026-05-04 12:39:40,676 | INFO     | sum of square deviations: 1577789583.0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,677 | INFO     | sum of deviations: 12931086647.000002
[2026-05-04 14:41:34] 2026-05-04 12:39:40,677 | INFO     | mean x (centered): 0.0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,677 | INFO     | mean y: 2293000.8720930233
[2026-05-04 14:41:34] 2026-05-04 12:39:40,677 | INFO     | intersect: 2293000.8720930233
[2026-05-04 14:41:34] 2026-05-04 12:39:40,677 | INFO     | chi2: 2.354736500757348
[2026-05-04 14:41:34] 2026-05-04 12:39:40,678 | INFO     | sum of square deviations: 1444149868.0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,679 | INFO     | sum of deviations: 24256473832.000004
[2026-05-04 14:41:34] 2026-05-04 12:39:40,679 | INFO     | mean x (centered): 0.0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,679 | INFO     | mean y: 2305602.275449102
[2026-05-04 14:41:34] 2026-05-04 12:39:40,679 | INFO     | intersect: 2305602.275449102
[2026-05-04 14:41:34] 2026-05-04 12:39:40,679 | INFO     | chi2: 1.3612913004929763
[2026-05-04 14:41:34] 2026-05-04 12:39:40,679 | INFO     | current chi2=1.3612913004929763 (change=42.18923008773391 %)
[2026-05-04 14:41:34] 2026-05-04 12:39:40,680 | INFO     | sum of square deviations: 1318277740.5
[2026-05-04 14:41:34] 2026-05-04 12:39:40,682 | INFO     | monitor loop #725: job 0:7119649463 is in state 'finished'
[2026-05-04 14:41:34] 2026-05-04 12:39:40,683 | INFO     | sum of deviations: 23374155954.499996
[2026-05-04 14:41:34] 2026-05-04 12:39:40,683 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-04 14:41:34] 2026-05-04 12:39:40,684 | INFO     | mean x (centered): 0.0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,684 | INFO     | mean y: 2304533.0061728396
[2026-05-04 14:41:34] 2026-05-04 12:39:40,684 | INFO     | intersect: 2304533.0061728396
[2026-05-04 14:41:34] 2026-05-04 12:39:40,684 | INFO     | chi2: 1.362266025553515
[2026-05-04 14:41:34] 2026-05-04 12:39:40,685 | INFO     | current chi2=1.362266025553515 (change=-0.07160297433662909 %)
[2026-05-04 14:41:34] 2026-05-04 12:39:40,685 | INFO     | right removable region: 161
[2026-05-04 14:41:34] 2026-05-04 12:39:40,685 | INFO     | sum of square deviations: 1444149868.0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,686 | INFO     | sum of deviations: -9311288819.0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,686 | INFO     | mean x (centered): 0.0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,686 | INFO     | mean y: 2318011.3233532934
[2026-05-04 14:41:34] 2026-05-04 12:39:40,686 | INFO     | intersect: 2318011.3233532934
[2026-05-04 14:41:34] 2026-05-04 12:39:40,687 | INFO     | chi2: 1.0265385427445157
[2026-05-04 14:41:34] 2026-05-04 12:39:40,687 | INFO     | current chi2=1.0265385427445157 (change=56.405375191052045 %)
[2026-05-04 14:41:34] 2026-05-04 12:39:40,687 | INFO     | sum of square deviations: 1318277740.5
[2026-05-04 14:41:34] 2026-05-04 12:39:40,688 | INFO     | sum of deviations: -8944141256.5
[2026-05-04 14:41:34] 2026-05-04 12:39:40,688 | INFO     | mean x (centered): 0.0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,688 | INFO     | mean y: 2317560.7592592593
[2026-05-04 14:41:34] 2026-05-04 12:39:40,688 | INFO     | intersect: 2317560.7592592593
[2026-05-04 14:41:34] 2026-05-04 12:39:40,689 | INFO     | chi2: 1.027078858940767
[2026-05-04 14:41:34] 2026-05-04 12:39:40,689 | INFO     | current chi2=1.027078858940767 (change=-0.052634769543732626 %)
[2026-05-04 14:41:34] 2026-05-04 12:39:40,689 | INFO     | left removable region: 10
[2026-05-04 14:41:34] 2026-05-04 12:39:40,689 | INFO     | sum of square deviations: 1067554900.0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,690 | INFO     | sum of deviations: 2102135579.0000005
[2026-05-04 14:41:34] 2026-05-04 12:39:40,690 | INFO     | mean x (centered): 0.0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,690 | INFO     | mean y: 2331409.523178808
[2026-05-04 14:41:34] 2026-05-04 12:39:40,690 | INFO     | intersect: 2331409.523178808
[2026-05-04 14:41:34] 2026-05-04 12:39:40,691 | INFO     | chi2: 0.0023269438157622092
[2026-05-04 14:41:34] 2026-05-04 12:39:40,691 | INFO     | current memory leak: 1.97 B/s (using 151 data points, chi2=0.00)
[2026-05-04 14:41:34] 2026-05-04 12:39:40,691 | INFO     | could have reported an average CPU frequency of 2726 MHz (9 samples)
[2026-05-04 14:41:34] 2026-05-04 12:39:40,692 | INFO     | ..............................
[2026-05-04 14:41:34] 2026-05-04 12:39:40,692 | INFO     | . Timing measurements:
[2026-05-04 14:41:34] 2026-05-04 12:39:40,692 | INFO     | . get job = 0 s
[2026-05-04 14:41:34] 2026-05-04 12:39:40,692 | INFO     | . initial setup = 8 s
[2026-05-04 14:41:34] 2026-05-04 12:39:40,692 | INFO     | . payload setup = 14 s
[2026-05-04 14:41:34] 2026-05-04 12:39:40,692 | INFO     | . stage-in = 0 s
[2026-05-04 14:41:34] 2026-05-04 12:39:40,692 | INFO     | . payload execution = 10437 s
[2026-05-04 14:41:34] 2026-05-04 12:39:40,692 | INFO     | . stage-out = 0 s
[2026-05-04 14:41:34] 2026-05-04 12:39:40,692 | INFO     | . log creation = 0 s
[2026-05-04 14:41:34] 2026-05-04 12:39:40,692 | INFO     | ..............................
[2026-05-04 14:41:34] 2026-05-04 12:39:40,789 | INFO     | 
[2026-05-04 14:41:34] 2026-05-04 12:39:40,791 | INFO     | job summary report
[2026-05-04 14:41:34] 2026-05-04 12:39:40,791 | INFO     | --------------------------------------------------
[2026-05-04 14:41:34] 2026-05-04 12:39:40,791 | INFO     | PanDA job id: 7119649463
[2026-05-04 14:41:34] 2026-05-04 12:39:40,791 | INFO     | task id: 49263191
[2026-05-04 14:41:34] 2026-05-04 12:39:40,791 | INFO     | errors: (none)
[2026-05-04 14:41:34] 2026-05-04 12:39:40,791 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-04 14:41:34] 2026-05-04 12:39:40,791 | INFO     | pilot state: finished 
[2026-05-04 14:41:34] 2026-05-04 12:39:40,792 | INFO     | transexitcode: 0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,792 | INFO     | exeerrorcode: 0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,792 | INFO     | exeerrordiag: 
[2026-05-04 14:41:34] 2026-05-04 12:39:40,792 | INFO     | exitcode: 0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,792 | INFO     | exitmsg: OK
[2026-05-04 14:41:34] 2026-05-04 12:39:40,792 | INFO     | cpuconsumptiontime: 39398 s
[2026-05-04 14:41:34] 2026-05-04 12:39:40,792 | INFO     | nevents: 400
[2026-05-04 14:41:34] 2026-05-04 12:39:40,792 | INFO     | neventsw: 0
[2026-05-04 14:41:34] 2026-05-04 12:39:40,792 | INFO     | pid: 2721600
[2026-05-04 14:41:34] 2026-05-04 12:39:40,792 | INFO     | pgrp: 2721600
[2026-05-04 14:41:34] 2026-05-04 12:39:40,792 | INFO     | corecount: 4
[2026-05-04 14:41:34] 2026-05-04 12:39:40,792 | INFO     | event service: False
[2026-05-04 14:41:34] 2026-05-04 12:39:40,793 | INFO     | sizes: {0: 2270453, 1: 2272282, 11: 2272282, 10457: 2301662, 10459: 2310682, 10461: 2310738, 10463: 2311124}
[2026-05-04 14:41:34] 2026-05-04 12:39:40,793 | INFO     | --------------------------------------------------
[2026-05-04 14:41:34] 2026-05-04 12:39:40,793 | INFO     | 
[2026-05-04 14:41:34] 2026-05-04 12:39:40,793 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot48/slots/3
[2026-05-04 14:41:34] 2026-05-04 12:39:40,824 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,827 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,827 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,827 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,827 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,827 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,827 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,828 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,828 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,828 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,828 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,828 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,828 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,829 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,829 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,829 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,829 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,829 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-04 14:41:34] 2026-05-04 12:39:40,829 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,829 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-04 14:41:34] 2026-05-04 12:39:40,829 | INFO     | job 7119649463 has completed (purged errors)
[2026-05-04 14:41:34] 2026-05-04 12:39:40,829 | INFO     | overall cleanup function is called
[2026-05-04 14:41:34] 2026-05-04 12:39:41,668 | INFO     | PID=2715392 has CPU usage=16.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-05-04 14:41:34] 2026-05-04 12:39:41,668 | INFO     | .. there are 23 such processes running
[2026-05-04 14:41:34] 2026-05-04 12:39:41,840 | INFO     | --- collectZombieJob: --- 10, [2721600]
[2026-05-04 14:41:34] 2026-05-04 12:39:41,841 | INFO     | zombie collector waiting for pid 2721600
[2026-05-04 14:41:34] 2026-05-04 12:39:41,841 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-04 14:41:34] 2026-05-04 12:39:41,841 | INFO     | collected zombie processes
[2026-05-04 14:41:34] 2026-05-04 12:39:41,841 | INFO     | will attempt to kill all subprocesses of pid=2721600
[2026-05-04 14:41:34] 2026-05-04 12:39:42,584 | INFO     | process IDs to be killed: [2721600] (in reverse order)
[2026-05-04 14:41:34] 2026-05-04 12:39:42,946 | WARNING  | found no corresponding commands to process id(s)
[2026-05-04 14:41:34] 2026-05-04 12:39:42,946 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-04 14:41:34] 2026-05-04 12:39:42,986 | INFO     | did not find any defunct processes belonging to 2721600
[2026-05-04 14:41:34] 2026-05-04 12:39:43,023 | INFO     | did not find any defunct processes belonging to 2721600
[2026-05-04 14:41:34] 2026-05-04 12:39:43,024 | INFO     | Ready for new job
[2026-05-04 14:41:34] 2026-05-04 12:39:43,026 | INFO     | ***************************************
[2026-05-04 14:41:34] 2026-05-04 12:39:43,027 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-04 14:41:34] 2026-05-04 12:39:43,027 | INFO     | ***************************************
[2026-05-04 14:41:34] 2026-05-04 12:39:43,027 | INFO     | 
[2026-05-04 14:41:34] 2026-05-04 12:39:43,035 | INFO     | architecture information:
[2026-05-04 14:41:34] 2026-05-04 12:39:43,035 | INFO     | executing command: cat /etc/os-release
[2026-05-04 14:41:34] 2026-05-04 12:39:43,059 | INFO     | cat /etc/os-release:
[2026-05-04 14:41:34] NAME="CentOS Linux"
[2026-05-04 14:41:34] VERSION="7 (Core)"
[2026-05-04 14:41:34] ID="centos"
[2026-05-04 14:41:34] ID_LIKE="rhel fedora"
[2026-05-04 14:41:34] VERSION_ID="7"
[2026-05-04 14:41:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-04 14:41:34] ANSI_COLOR="0;31"
[2026-05-04 14:41:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-04 14:41:34] HOME_URL="https://www.centos.org/"
[2026-05-04 14:41:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-04 14:41:34] 
[2026-05-04 14:41:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-04 14:41:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-04 14:41:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-04 14:41:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-04 14:41:34] 
[2026-05-04 14:41:34] 2026-05-04 12:39:43,060 | INFO     | ***************************************
[2026-05-04 14:41:34] 2026-05-04 12:39:43,563 | INFO     | executing command: df -mP /var/lib/boinc/var/slot48/slots/3
[2026-05-04 14:41:34] 2026-05-04 12:39:43,587 | INFO     | sufficient remaining disk space (234777214976 B)
[2026-05-04 14:41:34] 2026-05-04 12:39:43,587 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-04 14:41:34] 2026-05-04 12:39:43,587 | INFO     | current server update state: UPDATING_FINAL
[2026-05-04 14:41:34] 2026-05-04 12:39:43,587 | INFO     | update_server=False
[2026-05-04 14:41:34] 2026-05-04 12:39:43,588 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-04 14:41:34] 2026-05-04 12:39:43,978 | INFO     | all data control threads have been joined
[2026-05-04 14:41:34] 2026-05-04 12:39:44,192 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-04 14:41:34] 2026-05-04 12:39:44,192 | INFO     | aborting loop
[2026-05-04 14:41:34] 2026-05-04 12:39:44,457 | INFO     | all payload control threads have been joined
[2026-05-04 14:41:34] 2026-05-04 12:39:44,593 | INFO     | [job] retrieve thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:44,792 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-04 14:41:34] 2026-05-04 12:39:44,969 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-04 14:41:34] 2026-05-04 12:39:44,987 | INFO     | [data] control thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:45,034 | INFO     | all job control threads have been joined
[2026-05-04 14:41:34] 2026-05-04 12:39:45,085 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:45,147 | INFO     | [job] validate thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:45,194 | INFO     | [job] job monitor thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:45,422 | INFO     | [payload] validate_post thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:45,423 | INFO     | [payload] failed_post thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:45,462 | INFO     | [payload] control thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:45,560 | INFO     | [payload] validate_pre thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:45,616 | INFO     | [job] create_data_payload thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:45,697 | INFO     | [data] copytool_in thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:45,799 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-04 14:41:34] 2026-05-04 12:39:46,040 | INFO     | [job] control thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:46,061 | INFO     | [payload] execute_payloads thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:46,807 | INFO     | [job] queue monitor thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:46,974 | INFO     | [data] copytool_out thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:39:48,798 | INFO     | [data] queue_monitor thread has finished
[2026-05-04 14:41:34] 2026-05-04 12:40:14,844 | INFO     | PID=2715392 has CPU usage=5.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-04 14:41:34] 2026-05-04 12:40:14,844 | INFO     | .. there are 23 such processes running
[2026-05-04 14:41:34] 2026-05-04 12:40:14,846 | INFO     | found 0 job(s) in 20 queues
[2026-05-04 14:41:34] 2026-05-04 12:40:14,846 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-04 14:41:34] 2026-05-04 12:40:14,846 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-04 14:41:34] 2026-05-04 12:40:24,060 | INFO     | [monitor] cgroup control has ended
[2026-05-04 14:41:34] 2026-05-04 12:40:25,521 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23332286691136)>', '<ExcThread(monitor, started 23331983345408)>']
[2026-05-04 14:41:34] 2026-05-04 12:40:25,903 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-04 14:41:34] 2026-05-04 12:40:25,903 | INFO     | [monitor] control thread has ended
[2026-05-04 14:41:34] 2026-05-04 12:40:30,546 | INFO     | all workflow threads have been joined
[2026-05-04 14:41:34] 2026-05-04 12:40:30,546 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-04 14:41:34] 2026-05-04 12:40:30,546 | INFO     | traces error code: 0
[2026-05-04 14:41:34] 2026-05-04 12:40:30,546 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-04 14:41:34] 2026-05-04 12:40:30,708 [wrapper] ==== pilot stdout END ====
[2026-05-04 14:41:34] 2026-05-04 12:40:30,712 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-04 14:41:34] 2026-05-04 12:40:30,716 [wrapper] pilotpid: 2715392
[2026-05-04 14:41:34] 2026-05-04 12:40:30,724 [wrapper] Pilot exit status: 0
[2026-05-04 14:41:34] 2026-05-04 12:40:30,740 [wrapper] pandaids: 7119649463
[2026-05-04 14:41:34] 2026-05-04 12:40:30,964 [wrapper] cleanup supervisor_pilot 3188605 2715393
[2026-05-04 14:41:34] 2026-05-04 12:40:30,968 [wrapper] Test setup, not cleaning
[2026-05-04 14:41:34] 2026-05-04 12:40:30,972 [wrapper] apfmon messages muted
[2026-05-04 14:41:34] 2026-05-04 12:40:30,977 [wrapper] ==== wrapper stdout END ====
[2026-05-04 14:41:34] 2026-05-04 12:40:30,980 [wrapper] ==== wrapper stderr END ====
[2026-05-04 14:41:34]  *** Error codes and diagnostics ***
[2026-05-04 14:41:34]     "exeErrorCode": 0,
[2026-05-04 14:41:34]     "pilotErrorCode": 0,
[2026-05-04 14:41:34]  *** Listing of results directory ***
[2026-05-04 14:41:34] total 418392
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc    683926 May  1 05:51 pilot3.tar.gz
[2026-05-04 14:41:34] -rwx------. 1 boinc boinc     36322 May  1 05:52 runpilot2-wrapper.sh
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc      5631 May  1 05:54 queuedata.json
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc       100 May  4 11:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-04 14:41:34] -rwxr-xr-x. 1 boinc boinc      7986 May  4 11:44 run_atlas
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc       105 May  4 11:44 job.xml
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc      6541 May  4 11:44 init_data.xml
[2026-05-04 14:41:34] -rw-r--r--. 2 boinc boinc 225430059 May  4 11:44 EVNT.49263189._001692.pool.root.1
[2026-05-04 14:41:34] -rw-r--r--. 2 boinc boinc     15667 May  4 11:44 start_atlas.sh
[2026-05-04 14:41:34] drwxrwx--x. 2 boinc boinc      4096 May  4 11:44 shared
[2026-05-04 14:41:34] -rw-r--r--. 2 boinc boinc    697418 May  4 11:44 input.tar.gz
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc         0 May  4 11:44 boinc_lockfile
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc      2576 May  4 11:44 pandaJob.out
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc   1002664 May  4 11:44 agis_schedconf.cvmfs.json
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc   1505932 May  4 11:44 agis_ddmendpoints.agis.ALL.json
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc       443 May  4 11:45 workernode_map.json
[2026-05-04 14:41:34] drwx------. 5 boinc boinc      4096 May  4 11:45 pilot3
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc 196283373 May  4 14:38 HITS.49263191._083983.pool.root.1
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc       487 May  4 14:39 boinc_task_state.xml
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc      1029 May  4 14:39 memory_monitor_summary.json
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc    312776 May  4 14:39 log.49263191._083983.job.log.tgz.1
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc      6378 May  4 14:39 heartbeat_new.json
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc      6269 May  4 14:39 heartbeat.json
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc        95 May  4 14:40 pilot_heartbeat.json
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc      4833 May  4 14:40 pilotlog.txt
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc    979655 May  4 14:40 log.49263191._083983.job.log.1
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc       357 May  4 14:40 output.list
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc       410 May  4 14:40 runtime_log
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc   1310720 May  4 14:40 result.tar.gz
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc      8828 May  4 14:40 runtime_log.err
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc       665 May  4 14:40 238c63f6e5ea.diag
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc        27 May  4 14:41 wrapper_checkpoint.txt
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc      8192 May  4 14:41 boinc_mmap_file
[2026-05-04 14:41:34] -rw-r--r--. 1 boinc boinc     20965 May  4 14:41 stderr.txt
[2026-05-04 14:41:34] HITS file was successfully produced:
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc 196283373 May  4 14:38 shared/HITS.pool.root.1
[2026-05-04 14:41:34]  *** Contents of shared directory: ***
[2026-05-04 14:41:34] total 413820
[2026-05-04 14:41:34] -rw-r--r--. 2 boinc boinc 225430059 May  4 11:44 ATLAS.root_0
[2026-05-04 14:41:34] -rw-r--r--. 2 boinc boinc     15667 May  4 11:44 start_atlas.sh
[2026-05-04 14:41:34] -rw-r--r--. 2 boinc boinc    697418 May  4 11:44 input.tar.gz
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc 196283373 May  4 14:38 HITS.pool.root.1
[2026-05-04 14:41:34] -rw-------. 1 boinc boinc   1310720 May  4 14:40 result.tar.gz
14:41:36 (2711276): run_atlas exited; CPU time 39944.733137
14:41:36 (2711276): called boinc_finish(0)

</stderr_txt>
]]>

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