Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:44:34 (2942397): wrapper (7.7.26015): starting
12:44:34 (2942397): wrapper: running run_atlas (--nthreads 4)
[2026-05-02 12:44:34] Arguments: --nthreads 4
[2026-05-02 12:44:34] Threads: 4
[2026-05-02 12:44:34] Checking for CVMFS
[2026-05-02 12:44:35] No cvmfs_config command found, will try listing directly
[2026-05-02 12:44:35] CVMFS is ok
[2026-05-02 12:44:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-02 12:44:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-02 12:44:35] Further information can be found at the LHC@home message board.
[2026-05-02 12:44:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 12:44:35] Checking for apptainer binary...
[2026-05-02 12:44:35] which: no apptainer in ((null))
[2026-05-02 12:44:35] apptainer is not installed, using version from CVMFS
[2026-05-02 12:44:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 12:44:35] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut09.grid.cesnet.cz
[2026-05-02 12:44:35] apptainer works
[2026-05-02 12:44:35] Set ATHENA_PROC_NUMBER=4
[2026-05-02 12:44:35] Set ATHENA_CORE_NUMBER=4
[2026-05-02 12:44:35] Starting ATLAS job with PandaID=7123292731
[2026-05-02 12:44:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 15:47:52]  *** The last 200 lines of the pilot log: ***
[2026-05-02 15:47:52] 2026-05-02 13:45:12,032 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot36/slots/0/workernode_map.json
[2026-05-02 15:47:52] 2026-05-02 13:45:12,032 | INFO     | this job has now completed (state=finished)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,032 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,032 | INFO     | log transfer has been attempted: DONE
[2026-05-02 15:47:52] 2026-05-02 13:45:12,033 | INFO     | job 7123292731 has finished - writing final server update
[2026-05-02 15:47:52] 2026-05-02 13:45:12,033 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2298232/.job.ad'
[2026-05-02 15:47:52] 2026-05-02 13:45:12,033 | INFO     | total number of processed events: 400 (read)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,047 | INFO     | monitor loop #765: job 0:7123292731 is in state 'finished'
[2026-05-02 15:47:52] 2026-05-02 13:45:12,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,050 | INFO     | using path: /var/lib/boinc/var/slot36/slots/0/PanDA_Pilot-7123292731/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,051 | INFO     | extracted standard info from prmon json
[2026-05-02 15:47:52] 2026-05-02 13:45:12,051 | INFO     | extracted standard memory fields from prmon json
[2026-05-02 15:47:52] 2026-05-02 13:45:12,052 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-02 15:47:52] 2026-05-02 13:45:12,052 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-02 15:47:52] 2026-05-02 13:45:12,055 | INFO     | fitting pss+swap vs Time
[2026-05-02 15:47:52] 2026-05-02 13:45:12,056 | INFO     | sum of square deviations: 1690431269.9772716
[2026-05-02 15:47:52] 2026-05-02 13:45:12,057 | INFO     | sum of deviations: 3018956129.6818223
[2026-05-02 15:47:52] 2026-05-02 13:45:12,057 | INFO     | mean x (centered): 0.0
[2026-05-02 15:47:52] 2026-05-02 13:45:12,057 | INFO     | mean y: 2349791.659090909
[2026-05-02 15:47:52] 2026-05-02 13:45:12,057 | INFO     | intersect: 2349791.659090909
[2026-05-02 15:47:52] 2026-05-02 13:45:12,058 | INFO     | chi2: 1.524010123896906
[2026-05-02 15:47:52] 2026-05-02 13:45:12,058 | INFO     | sum of square deviations: 1550410649.9766166
[2026-05-02 15:47:52] 2026-05-02 13:45:12,059 | INFO     | sum of deviations: 2614815027.0584855
[2026-05-02 15:47:52] 2026-05-02 13:45:12,059 | INFO     | mean x (centered): 0.0
[2026-05-02 15:47:52] 2026-05-02 13:45:12,059 | INFO     | mean y: 2349363.9707602337
[2026-05-02 15:47:52] 2026-05-02 13:45:12,059 | INFO     | intersect: 2349363.9707602337
[2026-05-02 15:47:52] 2026-05-02 13:45:12,060 | INFO     | chi2: 1.5222542655845113
[2026-05-02 15:47:52] 2026-05-02 13:45:12,060 | INFO     | current chi2=1.5222542655845113 (change=0.1152130346683604 %)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,060 | INFO     | right removable region: 170
[2026-05-02 15:47:52] 2026-05-02 13:45:12,060 | INFO     | sum of square deviations: 1550409429.9766166
[2026-05-02 15:47:52] 2026-05-02 13:45:12,061 | INFO     | sum of deviations: -21347511003.684208
[2026-05-02 15:47:52] 2026-05-02 13:45:12,061 | INFO     | mean x (centered): 0.0
[2026-05-02 15:47:52] 2026-05-02 13:45:12,062 | INFO     | mean y: 2375956.8421052634
[2026-05-02 15:47:52] 2026-05-02 13:45:12,062 | INFO     | intersect: 2375956.8421052634
[2026-05-02 15:47:52] 2026-05-02 13:45:12,062 | INFO     | chi2: 0.05203678942655188
[2026-05-02 15:47:52] 2026-05-02 13:45:12,062 | INFO     | current chi2=0.05203678942655188 (change=96.58553518703056 %)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,063 | INFO     | sum of square deviations: 1418351413.4939694
[2026-05-02 15:47:52] 2026-05-02 13:45:12,064 | INFO     | sum of deviations: -18849730532.98794
[2026-05-02 15:47:52] 2026-05-02 13:45:12,064 | INFO     | mean x (centered): 0.0
[2026-05-02 15:47:52] 2026-05-02 13:45:12,064 | INFO     | mean y: 2373065.987951807
[2026-05-02 15:47:52] 2026-05-02 13:45:12,064 | INFO     | intersect: 2373065.987951807
[2026-05-02 15:47:52] 2026-05-02 13:45:12,064 | INFO     | chi2: 0.05122256597144474
[2026-05-02 15:47:52] 2026-05-02 13:45:12,064 | INFO     | current chi2=0.05122256597144474 (change=1.5647073235684217 %)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,064 | INFO     | left removable region: 10
[2026-05-02 15:47:52] 2026-05-02 13:45:12,065 | INFO     | sum of square deviations: 1270042021.9937544
[2026-05-02 15:47:52] 2026-05-02 13:45:12,066 | INFO     | sum of deviations: -18505602403.625
[2026-05-02 15:47:52] 2026-05-02 13:45:12,066 | INFO     | mean x (centered): 0.0
[2026-05-02 15:47:52] 2026-05-02 13:45:12,066 | INFO     | mean y: 2373508.625
[2026-05-02 15:47:52] 2026-05-02 13:45:12,066 | INFO     | intersect: 2373508.625
[2026-05-02 15:47:52] 2026-05-02 13:45:12,066 | INFO     | chi2: 0.046271025004348605
[2026-05-02 15:47:52] 2026-05-02 13:45:12,067 | INFO     | current memory leak: -14.57 B/s (using 160 data points, chi2=0.05)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,067 | INFO     | could have reported an average CPU frequency of 2510 MHz (9 samples)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,067 | INFO     | ..............................
[2026-05-02 15:47:52] 2026-05-02 13:45:12,067 | INFO     | . Timing measurements:
[2026-05-02 15:47:52] 2026-05-02 13:45:12,067 | INFO     | . get job = 0 s
[2026-05-02 15:47:52] 2026-05-02 13:45:12,068 | INFO     | . initial setup = 25 s
[2026-05-02 15:47:52] 2026-05-02 13:45:12,068 | INFO     | . payload setup = 26 s
[2026-05-02 15:47:52] 2026-05-02 13:45:12,068 | INFO     | . stage-in = 0 s
[2026-05-02 15:47:52] 2026-05-02 13:45:12,068 | INFO     | . payload execution = 10730 s
[2026-05-02 15:47:52] 2026-05-02 13:45:12,068 | INFO     | . stage-out = 1 s
[2026-05-02 15:47:52] 2026-05-02 13:45:12,068 | INFO     | . log creation = 0 s
[2026-05-02 15:47:52] 2026-05-02 13:45:12,068 | INFO     | ..............................
[2026-05-02 15:47:52] 2026-05-02 13:45:12,181 | INFO     | 
[2026-05-02 15:47:52] 2026-05-02 13:45:12,182 | INFO     | job summary report
[2026-05-02 15:47:52] 2026-05-02 13:45:12,182 | INFO     | --------------------------------------------------
[2026-05-02 15:47:52] 2026-05-02 13:45:12,182 | INFO     | PanDA job id: 7123292731
[2026-05-02 15:47:52] 2026-05-02 13:45:12,182 | INFO     | task id: 50017025
[2026-05-02 15:47:52] 2026-05-02 13:45:12,182 | INFO     | errors: (none)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,182 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-02 15:47:52] 2026-05-02 13:45:12,182 | INFO     | pilot state: finished 
[2026-05-02 15:47:52] 2026-05-02 13:45:12,182 | INFO     | transexitcode: 0
[2026-05-02 15:47:52] 2026-05-02 13:45:12,182 | INFO     | exeerrorcode: 0
[2026-05-02 15:47:52] 2026-05-02 13:45:12,182 | INFO     | exeerrordiag: 
[2026-05-02 15:47:52] 2026-05-02 13:45:12,182 | INFO     | exitcode: 0
[2026-05-02 15:47:52] 2026-05-02 13:45:12,182 | INFO     | exitmsg: OK
[2026-05-02 15:47:52] 2026-05-02 13:45:12,183 | INFO     | cpuconsumptiontime: 37253 s
[2026-05-02 15:47:52] 2026-05-02 13:45:12,183 | INFO     | nevents: 400
[2026-05-02 15:47:52] 2026-05-02 13:45:12,183 | INFO     | neventsw: 0
[2026-05-02 15:47:52] 2026-05-02 13:45:12,183 | INFO     | pid: 2952213
[2026-05-02 15:47:52] 2026-05-02 13:45:12,183 | INFO     | pgrp: 2952213
[2026-05-02 15:47:52] 2026-05-02 13:45:12,183 | INFO     | corecount: 4
[2026-05-02 15:47:52] 2026-05-02 13:45:12,183 | INFO     | event service: False
[2026-05-02 15:47:52] 2026-05-02 13:45:12,183 | INFO     | sizes: {0: 2275239, 1: 2277068, 10761: 2305965, 10763: 2315041, 10765: 2315243}
[2026-05-02 15:47:52] 2026-05-02 13:45:12,183 | INFO     | --------------------------------------------------
[2026-05-02 15:47:52] 2026-05-02 13:45:12,183 | INFO     | 
[2026-05-02 15:47:52] 2026-05-02 13:45:12,184 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot36/slots/0
[2026-05-02 15:47:52] 2026-05-02 13:45:12,234 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,234 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,234 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,234 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,234 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,234 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,235 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,235 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,235 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,235 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,235 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,235 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,235 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,235 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,235 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,235 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,236 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,236 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,236 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,236 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-02 15:47:52] 2026-05-02 13:45:12,236 | INFO     | job 7123292731 has completed (purged errors)
[2026-05-02 15:47:52] 2026-05-02 13:45:12,236 | INFO     | overall cleanup function is called
[2026-05-02 15:47:52] 2026-05-02 13:45:13,243 | INFO     | --- collectZombieJob: --- 10, [2952213]
[2026-05-02 15:47:52] 2026-05-02 13:45:13,244 | INFO     | zombie collector waiting for pid 2952213
[2026-05-02 15:47:52] 2026-05-02 13:45:13,244 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 15:47:52] 2026-05-02 13:45:13,244 | INFO     | collected zombie processes
[2026-05-02 15:47:52] 2026-05-02 13:45:13,244 | INFO     | will attempt to kill all subprocesses of pid=2952213
[2026-05-02 15:47:52] 2026-05-02 13:45:13,649 | INFO     | process IDs to be killed: [2952213] (in reverse order)
[2026-05-02 15:47:52] 2026-05-02 13:45:13,811 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 15:47:52] 2026-05-02 13:45:13,812 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 15:47:52] 2026-05-02 13:45:13,894 | INFO     | did not find any defunct processes belonging to 2952213
[2026-05-02 15:47:52] 2026-05-02 13:45:13,934 | INFO     | did not find any defunct processes belonging to 2952213
[2026-05-02 15:47:52] 2026-05-02 13:45:13,934 | INFO     | Ready for new job
[2026-05-02 15:47:52] 2026-05-02 13:45:13,936 | INFO     | ***************************************
[2026-05-02 15:47:52] 2026-05-02 13:45:13,937 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 15:47:52] 2026-05-02 13:45:13,937 | INFO     | ***************************************
[2026-05-02 15:47:52] 2026-05-02 13:45:13,937 | INFO     | 
[2026-05-02 15:47:52] 2026-05-02 13:45:13,945 | INFO     | architecture information:
[2026-05-02 15:47:52] 2026-05-02 13:45:13,954 | INFO     | executing command: cat /etc/os-release
[2026-05-02 15:47:52] 2026-05-02 13:45:13,983 | INFO     | cat /etc/os-release:
[2026-05-02 15:47:52] NAME="CentOS Linux"
[2026-05-02 15:47:52] VERSION="7 (Core)"
[2026-05-02 15:47:52] ID="centos"
[2026-05-02 15:47:52] ID_LIKE="rhel fedora"
[2026-05-02 15:47:52] VERSION_ID="7"
[2026-05-02 15:47:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 15:47:52] ANSI_COLOR="0;31"
[2026-05-02 15:47:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 15:47:52] HOME_URL="https://www.centos.org/"
[2026-05-02 15:47:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 15:47:52] 
[2026-05-02 15:47:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 15:47:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 15:47:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 15:47:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 15:47:52] 
[2026-05-02 15:47:52] 2026-05-02 13:45:13,983 | INFO     | ***************************************
[2026-05-02 15:47:52] 2026-05-02 13:45:14,486 | INFO     | executing command: df -mP /var/lib/boinc/var/slot36/slots/0
[2026-05-02 15:47:52] 2026-05-02 13:45:14,510 | INFO     | sufficient remaining disk space (33172750336 B)
[2026-05-02 15:47:52] 2026-05-02 13:45:14,510 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 15:47:52] 2026-05-02 13:45:14,510 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 15:47:52] 2026-05-02 13:45:14,511 | INFO     | update_server=False
[2026-05-02 15:47:52] 2026-05-02 13:45:14,511 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 15:47:52] 2026-05-02 13:45:14,549 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-02 15:47:52] 2026-05-02 13:45:14,550 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-02 15:47:52] 2026-05-02 13:45:14,550 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 15:47:52] 2026-05-02 13:45:14,550 | INFO     | will abort loop
[2026-05-02 15:47:52] 2026-05-02 13:45:14,624 | INFO     | all data control threads have been joined
[2026-05-02 15:47:52] 2026-05-02 13:45:14,638 | INFO     | all payload control threads have been joined
[2026-05-02 15:47:52] 2026-05-02 13:45:15,039 | INFO     | all job control threads have been joined
[2026-05-02 15:47:52] 2026-05-02 13:45:15,212 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 15:47:52] 2026-05-02 13:45:15,516 | INFO     | [job] retrieve thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:15,555 | INFO     | [job] job monitor thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:15,600 | INFO     | [job] validate thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:15,630 | INFO     | [data] control thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:15,644 | INFO     | [payload] control thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:15,982 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:15,999 | INFO     | [payload] failed_post thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:16,045 | INFO     | [job] control thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:16,441 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 15:47:52] 2026-05-02 13:45:16,479 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:16,575 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:16,632 | INFO     | [data] copytool_in thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:17,110 | INFO     | [payload] validate_post thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:17,190 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 15:47:52] 2026-05-02 13:45:17,217 | INFO     | [data] copytool_out thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:18,195 | INFO     | [job] queue monitor thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:20,446 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:20,830 [wrapper] supervise_pilot (15 min periods counter: 13)
[2026-05-02 15:47:52] 2026-05-02 13:45:24,584 | INFO     | job.realtimelogging is not enabled
[2026-05-02 15:47:52] 2026-05-02 13:45:25,590 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 15:47:52] 2026-05-02 13:45:44,031 | INFO     | PID=2947157 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-02 15:47:52] 2026-05-02 13:45:44,032 | INFO     | .. there are 12 such processes running
[2026-05-02 15:47:52] 2026-05-02 13:45:44,036 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 15:47:52] 2026-05-02 13:45:44,036 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 15:47:52] 2026-05-02 13:45:44,036 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 15:47:52] 2026-05-02 13:46:03,690 | INFO     | [monitor] cgroup control has ended
[2026-05-02 15:47:52] 2026-05-02 13:46:05,337 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23135194261312)>', '<ExcThread(monitor, started 23134887442176)>']
[2026-05-02 15:47:52] 2026-05-02 13:46:06,146 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 15:47:52] 2026-05-02 13:46:06,147 | INFO     | [monitor] control thread has ended
[2026-05-02 15:47:52] 2026-05-02 13:46:10,361 | INFO     | all workflow threads have been joined
[2026-05-02 15:47:52] 2026-05-02 13:46:10,362 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 15:47:52] 2026-05-02 13:46:10,362 | INFO     | traces error code: 0
[2026-05-02 15:47:52] 2026-05-02 13:46:10,362 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 15:47:52] 2026-05-02 13:46:10,528 [wrapper] ==== pilot stdout END ====
[2026-05-02 15:47:52] 2026-05-02 13:46:10,532 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 15:47:52] 2026-05-02 13:46:10,535 [wrapper] pilotpid: 2947157
[2026-05-02 15:47:52] 2026-05-02 13:46:10,538 [wrapper] Pilot exit status: 0
[2026-05-02 15:47:52] 2026-05-02 13:46:10,551 [wrapper] pandaids: 7123292731
[2026-05-02 15:47:52] 2026-05-02 13:46:10,638 [wrapper] cleanup supervisor_pilot 3134210 2947158
[2026-05-02 15:47:52] 2026-05-02 13:46:10,642 [wrapper] Test setup, not cleaning
[2026-05-02 15:47:52] 2026-05-02 13:46:10,644 [wrapper] apfmon messages muted
[2026-05-02 15:47:52] 2026-05-02 13:46:10,647 [wrapper] ==== wrapper stdout END ====
[2026-05-02 15:47:52] 2026-05-02 13:46:10,681 [wrapper] ==== wrapper stderr END ====
[2026-05-02 15:47:52]  *** Error codes and diagnostics ***
[2026-05-02 15:47:52]     "exeErrorCode": 0,
[2026-05-02 15:47:52]     "pilotErrorCode": 0,
[2026-05-02 15:47:52]  *** Listing of results directory ***
[2026-05-02 15:47:52] total 471168
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc    683926 May  1 05:51 pilot3.tar.gz
[2026-05-02 15:47:52] -rwx------. 1 boinc boinc     36322 May  1 05:52 runpilot2-wrapper.sh
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc      5631 May  1 05:54 queuedata.json
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc       100 May  2 12:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 15:47:52] -rwxr-xr-x. 1 boinc boinc      7986 May  2 12:44 run_atlas
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc       105 May  2 12:44 job.xml
[2026-05-02 15:47:52] -rw-r--r--. 2 boinc boinc 313911173 May  2 12:44 EVNT.50017019._000055.pool.root.1
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc      6483 May  2 12:44 init_data.xml
[2026-05-02 15:47:52] -rw-r--r--. 2 boinc boinc     15667 May  2 12:44 start_atlas.sh
[2026-05-02 15:47:52] drwxrwx--x. 2 boinc boinc      4096 May  2 12:44 shared
[2026-05-02 15:47:52] -rw-r--r--. 2 boinc boinc    697399 May  2 12:44 input.tar.gz
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc         0 May  2 12:44 boinc_lockfile
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc      2521 May  2 12:44 pandaJob.out
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc   1002992 May  2 12:45 agis_schedconf.cvmfs.json
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc   1508687 May  2 12:45 agis_ddmendpoints.agis.ALL.json
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc       444 May  2 12:45 workernode_map.json
[2026-05-02 15:47:52] drwx------. 5 boinc boinc      4096 May  2 12:45 pilot3
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc 161844963 May  2 15:44 HITS.50017025._001360.pool.root.1
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc       486 May  2 15:44 boinc_task_state.xml
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc      1033 May  2 15:45 memory_monitor_summary.json
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc    293759 May  2 15:45 log.50017025._001360.job.log.tgz.1
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc      6418 May  2 15:45 heartbeat_new.json
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc      6309 May  2 15:45 heartbeat.json
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc        95 May  2 15:45 pilot_heartbeat.json
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc      5090 May  2 15:46 pilotlog.txt
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc    999265 May  2 15:46 log.50017025._001360.job.log.1
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc       357 May  2 15:46 output.list
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc       410 May  2 15:46 runtime_log
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc   1310720 May  2 15:46 result.tar.gz
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc      8828 May  2 15:46 runtime_log.err
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc       665 May  2 15:46 2374638672ad.diag
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc      8192 May  2 15:47 boinc_mmap_file
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc        26 May  2 15:47 wrapper_checkpoint.txt
[2026-05-02 15:47:52] -rw-r--r--. 1 boinc boinc     21013 May  2 15:47 stderr.txt
[2026-05-02 15:47:52] HITS file was successfully produced:
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc 161844963 May  2 15:44 shared/HITS.pool.root.1
[2026-05-02 15:47:52]  *** Contents of shared directory: ***
[2026-05-02 15:47:52] total 466596
[2026-05-02 15:47:52] -rw-r--r--. 2 boinc boinc 313911173 May  2 12:44 ATLAS.root_0
[2026-05-02 15:47:52] -rw-r--r--. 2 boinc boinc     15667 May  2 12:44 start_atlas.sh
[2026-05-02 15:47:52] -rw-r--r--. 2 boinc boinc    697399 May  2 12:44 input.tar.gz
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc 161844963 May  2 15:44 HITS.pool.root.1
[2026-05-02 15:47:52] -rw-------. 1 boinc boinc   1310720 May  2 15:46 result.tar.gz
15:47:54 (2942397): run_atlas exited; CPU time 37652.095264
15:47:54 (2942397): called boinc_finish(0)

</stderr_txt>
]]>

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