Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:31 (1961514): wrapper (7.7.26015): starting
00:03:31 (1961514): wrapper: running run_atlas (--nthreads 11)
[2026-05-01 00:03:31] Arguments: --nthreads 11
[2026-05-01 00:03:31] Threads: 11
[2026-05-01 00:03:31] Checking for CVMFS
[2026-05-01 00:03:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-01 00:03:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-01 00:03:32] Running cvmfs_config stat atlas.cern.ch
[2026-05-01 00:03:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-01 00:03:33] 2.13.3.0 11845 850 88624 159076 3 196 25489819 32935937 12168 16776704 0 2115861 99.281 2970582 37915 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-05-01 00:03:33] CVMFS is ok
[2026-05-01 00:03:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-01 00:03:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-01 00:03:33] Further information can be found at the LHC@home message board.
[2026-05-01 00:03:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 00:03:33] Checking for apptainer binary...
[2026-05-01 00:03:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-01 00:03:33] Running /usr/bin/apptainer --version
[2026-05-01 00:03:33] apptainer version 1.4.5-3.el9
[2026-05-01 00:03:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 00:03:34] c6-5-37-2.aglt2.org
[2026-05-01 00:03:34] apptainer works
[2026-05-01 00:03:34] Set ATHENA_PROC_NUMBER=11
[2026-05-01 00:03:34] Set ATHENA_CORE_NUMBER=11
[2026-05-01 00:03:34] Starting ATLAS job with PandaID=7123133992
[2026-05-01 00:03:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 05:47:06]  *** The last 200 lines of the pilot log: ***
[2026-05-01 05:47:06] 2026-05-01 09:46:28,487 | WARNING  | process 1988906 can no longer be monitored (due to stat problems) - aborting
[2026-05-01 05:47:06] 2026-05-01 09:46:28,492 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7123133992/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 05:47:06] 2026-05-01 09:46:28,869 | INFO     | number of running child processes to parent process 1988906: 1
[2026-05-01 05:47:06] 2026-05-01 09:46:28,869 | INFO     | maximum number of monitored processes: 7
[2026-05-01 05:47:06] 2026-05-01 09:46:28,983 | INFO     | job 7123133992 has state=finished
[2026-05-01 05:47:06] 2026-05-01 09:46:28,983 | INFO     | preparing for final server update for job 7123133992 in state='finished'
[2026-05-01 05:47:06] 2026-05-01 09:46:28,984 | INFO     | reading metadata from: /tmp/boinchome/slots/2/PanDA_Pilot-7123133992/jobReport.json
[2026-05-01 05:47:06] 2026-05-01 09:46:28,986 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/2/workernode_map.json
[2026-05-01 05:47:06] 2026-05-01 09:46:28,987 | INFO     | this job has now completed (state=finished)
[2026-05-01 05:47:06] 2026-05-01 09:46:28,987 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-01 05:47:06] 2026-05-01 09:46:28,987 | INFO     | log transfer has been attempted: DONE
[2026-05-01 05:47:06] 2026-05-01 09:46:28,987 | INFO     | job 7123133992 has finished - writing final server update
[2026-05-01 05:47:06] 2026-05-01 09:46:28,987 | INFO     | total number of processed events: 400 (read)
[2026-05-01 05:47:06] 2026-05-01 09:46:29,055 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7123133992/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 05:47:06] 2026-05-01 09:46:29,056 | INFO     | extracted standard info from prmon json
[2026-05-01 05:47:06] 2026-05-01 09:46:29,056 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 05:47:06] 2026-05-01 09:46:29,065 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 05:47:06] 2026-05-01 09:46:29,065 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 05:47:06] 2026-05-01 09:46:29,075 | INFO     | fitting pss+swap vs Time
[2026-05-01 05:47:06] 2026-05-01 09:46:29,076 | INFO     | sum of square deviations: 11552879290.745481
[2026-05-01 05:47:06] 2026-05-01 09:46:29,088 | INFO     | sum of deviations: 149249329373.25723
[2026-05-01 05:47:06] 2026-05-01 09:46:29,088 | INFO     | mean x (centered): 0.0
[2026-05-01 05:47:06] 2026-05-01 09:46:29,088 | INFO     | mean y: 2597170.844311377
[2026-05-01 05:47:06] 2026-05-01 09:46:29,088 | INFO     | intersect: 2597170.844311377
[2026-05-01 05:47:06] 2026-05-01 09:46:29,089 | INFO     | chi2: 4.510357281325638
[2026-05-01 05:47:06] 2026-05-01 09:46:29,089 | INFO     | sum of square deviations: 11041764712.808466
[2026-05-01 05:47:06] 2026-05-01 09:46:29,096 | INFO     | sum of deviations: 169534271971.59564
[2026-05-01 05:47:06] 2026-05-01 09:46:29,096 | INFO     | mean x (centered): 0.0
[2026-05-01 05:47:06] 2026-05-01 09:46:29,096 | INFO     | mean y: 2603139.1367781153
[2026-05-01 05:47:06] 2026-05-01 09:46:29,096 | INFO     | intersect: 2603139.1367781153
[2026-05-01 05:47:06] 2026-05-01 09:46:29,097 | INFO     | chi2: 3.776496326711923
[2026-05-01 05:47:06] 2026-05-01 09:46:29,097 | INFO     | current chi2=3.776496326711923 (change=16.270572569763836 %)
[2026-05-01 05:47:06] 2026-05-01 09:46:29,097 | INFO     | right removable region: 328
[2026-05-01 05:47:06] 2026-05-01 09:46:29,097 | INFO     | sum of square deviations: 11041704932.808456
[2026-05-01 05:47:06] 2026-05-01 09:46:29,100 | INFO     | sum of deviations: 42724756101.19156
[2026-05-01 05:47:06] 2026-05-01 09:46:29,100 | INFO     | mean x (centered): 0.0
[2026-05-01 05:47:06] 2026-05-01 09:46:29,100 | INFO     | mean y: 2628896.987841945
[2026-05-01 05:47:06] 2026-05-01 09:46:29,100 | INFO     | intersect: 2628896.987841945
[2026-05-01 05:47:06] 2026-05-01 09:46:29,100 | INFO     | chi2: 1.0270144232410812
[2026-05-01 05:47:06] 2026-05-01 09:46:29,100 | INFO     | current chi2=1.0270144232410812 (change=77.22986541458127 %)
[2026-05-01 05:47:06] 2026-05-01 09:46:29,101 | INFO     | sum of square deviations: 10545853499.959806
[2026-05-01 05:47:06] 2026-05-01 09:46:29,102 | INFO     | sum of deviations: 13888100492.382736
[2026-05-01 05:47:06] 2026-05-01 09:46:29,105 | INFO     | mean x (centered): 0.0
[2026-05-01 05:47:06] 2026-05-01 09:46:29,105 | INFO     | mean y: 2637742.9135802467
[2026-05-01 05:47:06] 2026-05-01 09:46:29,105 | INFO     | intersect: 2637742.9135802467
[2026-05-01 05:47:06] 2026-05-01 09:46:29,105 | INFO     | chi2: 0.7842039241115164
[2026-05-01 05:47:06] 2026-05-01 09:46:29,105 | INFO     | current chi2=0.7842039241115164 (change=23.642365056889513 %)
[2026-05-01 05:47:06] 2026-05-01 09:46:29,106 | INFO     | left removable region: 10
[2026-05-01 05:47:06] 2026-05-01 09:46:29,106 | INFO     | sum of square deviations: 9970731316.518845
[2026-05-01 05:47:06] 2026-05-01 09:46:29,108 | INFO     | sum of deviations: 35358330879.40565
[2026-05-01 05:47:06] 2026-05-01 09:46:29,108 | INFO     | mean x (centered): 0.0
[2026-05-01 05:47:06] 2026-05-01 09:46:29,108 | INFO     | mean y: 2644462.9905660376
[2026-05-01 05:47:06] 2026-05-01 09:46:29,108 | INFO     | intersect: 2644462.9905660376
[2026-05-01 05:47:06] 2026-05-01 09:46:29,108 | INFO     | chi2: 0.022120523159701082
[2026-05-01 05:47:06] 2026-05-01 09:46:29,108 | INFO     | current memory leak: 3.55 B/s (using 318 data points, chi2=0.02)
[2026-05-01 05:47:06] 2026-05-01 09:46:29,112 | INFO     | could have reported an average CPU frequency of 3023 MHz (15 samples)
[2026-05-01 05:47:06] 2026-05-01 09:46:29,113 | INFO     | ..............................
[2026-05-01 05:47:06] 2026-05-01 09:46:29,113 | INFO     | . Timing measurements:
[2026-05-01 05:47:06] 2026-05-01 09:46:29,113 | INFO     | . get job = 0 s
[2026-05-01 05:47:06] 2026-05-01 09:46:29,113 | INFO     | . initial setup = 39 s
[2026-05-01 05:47:06] 2026-05-01 09:46:29,113 | INFO     | . payload setup = 78 s
[2026-05-01 05:47:06] 2026-05-01 09:46:29,113 | INFO     | . stage-in = 0 s
[2026-05-01 05:47:06] 2026-05-01 09:46:29,113 | INFO     | . payload execution = 20363 s
[2026-05-01 05:47:06] 2026-05-01 09:46:29,113 | INFO     | . stage-out = 5 s
[2026-05-01 05:47:06] 2026-05-01 09:46:29,113 | INFO     | . log creation = 1 s
[2026-05-01 05:47:06] 2026-05-01 09:46:29,113 | INFO     | ..............................
[2026-05-01 05:47:06] 2026-05-01 09:46:29,221 | INFO     | 
[2026-05-01 05:47:06] 2026-05-01 09:46:29,221 | INFO     | job summary report
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | --------------------------------------------------
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | PanDA job id: 7123133992
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | task id: 50017337
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | errors: (none)
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | pilot state: finished 
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | transexitcode: 0
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | exeerrorcode: 0
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | exeerrordiag: 
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | exitcode: 0
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | exitmsg: OK
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | cpuconsumptiontime: 77005 s
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | nevents: 400
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | neventsw: 0
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | pid: 1988906
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | pgrp: 1988906
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | corecount: 11
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | event service: False
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | sizes: {0: 2276453, 1: 2276537, 2: 2278366, 13: 2278366, 20442: 2312085, 20449: 2321357, 20450: 2321541, 20452: 2321735}
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | --------------------------------------------------
[2026-05-01 05:47:06] 2026-05-01 09:46:29,222 | INFO     | 
[2026-05-01 05:47:06] 2026-05-01 09:46:29,223 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-05-01 05:47:06] 2026-05-01 09:46:29,295 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,295 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,296 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,297 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 05:47:06] 2026-05-01 09:46:29,297 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,297 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 05:47:06] 2026-05-01 09:46:29,297 | INFO     | job 7123133992 has completed (purged errors)
[2026-05-01 05:47:06] 2026-05-01 09:46:29,297 | INFO     | overall cleanup function is called
[2026-05-01 05:47:06] 2026-05-01 09:46:30,341 | INFO     | --- collectZombieJob: --- 10, [1988906]
[2026-05-01 05:47:06] 2026-05-01 09:46:30,341 | INFO     | zombie collector waiting for pid 1988906
[2026-05-01 05:47:06] 2026-05-01 09:46:30,341 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 05:47:06] 2026-05-01 09:46:30,341 | INFO     | collected zombie processes
[2026-05-01 05:47:06] 2026-05-01 09:46:30,341 | INFO     | will attempt to kill all subprocesses of pid=1988906
[2026-05-01 05:47:06] 2026-05-01 09:46:30,746 | INFO     | process IDs to be killed: [1988906] (in reverse order)
[2026-05-01 05:47:06] 2026-05-01 09:46:31,132 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 05:47:06] 2026-05-01 09:46:31,133 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 05:47:06] 2026-05-01 09:46:31,181 | INFO     | did not find any defunct processes belonging to 1988906
[2026-05-01 05:47:06] 2026-05-01 09:46:31,192 | INFO     | did not find any defunct processes belonging to 1988906
[2026-05-01 05:47:06] 2026-05-01 09:46:31,202 | INFO     | Ready for new job
[2026-05-01 05:47:06] 2026-05-01 09:46:31,204 | INFO     | ***************************************
[2026-05-01 05:47:06] 2026-05-01 09:46:31,204 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 05:47:06] 2026-05-01 09:46:31,204 | INFO     | ***************************************
[2026-05-01 05:47:06] 2026-05-01 09:46:31,204 | INFO     | 
[2026-05-01 05:47:06] 2026-05-01 09:46:31,211 | INFO     | architecture information:
[2026-05-01 05:47:06] 2026-05-01 09:46:31,217 | INFO     | executing command: cat /etc/os-release
[2026-05-01 05:47:06] 2026-05-01 09:46:31,288 | INFO     | cat /etc/os-release:
[2026-05-01 05:47:06] NAME="CentOS Linux"
[2026-05-01 05:47:06] VERSION="7 (Core)"
[2026-05-01 05:47:06] ID="centos"
[2026-05-01 05:47:06] ID_LIKE="rhel fedora"
[2026-05-01 05:47:06] VERSION_ID="7"
[2026-05-01 05:47:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 05:47:06] ANSI_COLOR="0;31"
[2026-05-01 05:47:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 05:47:06] HOME_URL="https://www.centos.org/"
[2026-05-01 05:47:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 05:47:06] 
[2026-05-01 05:47:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 05:47:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 05:47:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 05:47:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 05:47:06] 
[2026-05-01 05:47:06] 2026-05-01 09:46:31,288 | INFO     | ***************************************
[2026-05-01 05:47:06] 2026-05-01 09:46:31,795 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-05-01 05:47:06] 2026-05-01 09:46:31,863 | INFO     | sufficient remaining disk space (74850500608 B)
[2026-05-01 05:47:06] 2026-05-01 09:46:31,863 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 05:47:06] 2026-05-01 09:46:31,864 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 05:47:06] 2026-05-01 09:46:31,864 | INFO     | update_server=False
[2026-05-01 05:47:06] 2026-05-01 09:46:31,864 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 05:47:06] 2026-05-01 09:46:32,379 | INFO     | all job control threads have been joined
[2026-05-01 05:47:06] 2026-05-01 09:46:32,403 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 05:47:06] 2026-05-01 09:46:32,403 | INFO     | aborting loop
[2026-05-01 05:47:06] 2026-05-01 09:46:32,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 05:47:06] 2026-05-01 09:46:32,651 | INFO     | all payload control threads have been joined
[2026-05-01 05:47:06] 2026-05-01 09:46:32,864 | INFO     | all data control threads have been joined
[2026-05-01 05:47:06] 2026-05-01 09:46:32,870 | INFO     | [job] retrieve thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:32,944 | INFO     | [job] validate thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:32,963 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:33,386 | INFO     | [job] control thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:33,420 | INFO     | [job] job monitor thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:33,535 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:33,559 | INFO     | [data] copytool_in thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:33,562 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 05:47:06] 2026-05-01 09:46:33,657 | INFO     | [payload] control thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:33,873 | INFO     | [data] control thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:33,953 | INFO     | [payload] failed_post thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:34,188 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:34,247 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 05:47:06] 2026-05-01 09:46:34,271 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:34,316 | INFO     | [payload] validate_post thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:34,512 | INFO     | [data] copytool_out thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:35,274 | INFO     | [job] queue monitor thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:37,571 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 05:47:06] 2026-05-01 09:46:59,396 | INFO     | [monitor] cgroup control has ended
[2026-05-01 05:47:06] 2026-05-01 09:46:59,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139824578942784)>', '<ExcThread(monitor, started 139824228968192)>']
[2026-05-01 05:47:06] 2026-05-01 09:47:01,792 | INFO     | PID=1972535 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-01 05:47:06] 2026-05-01 09:47:01,792 | INFO     | .. there are 17 such processes running
[2026-05-01 05:47:06] 2026-05-01 09:47:01,800 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 05:47:06] 2026-05-01 09:47:01,800 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 05:47:06] 2026-05-01 09:47:01,800 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 05:47:06] 2026-05-01 09:47:01,800 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 05:47:06] 2026-05-01 09:47:01,800 | INFO     | [monitor] control thread has ended
[2026-05-01 05:47:06] 2026-05-01 09:47:05,021 | INFO     | all workflow threads have been joined
[2026-05-01 05:47:06] 2026-05-01 09:47:05,021 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 05:47:06] 2026-05-01 09:47:05,021 | INFO     | traces error code: 0
[2026-05-01 05:47:06] 2026-05-01 09:47:05,021 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 05:47:06] 2026-05-01 09:47:05,577 [wrapper] ==== pilot stdout END ====
[2026-05-01 05:47:06] 2026-05-01 09:47:05,581 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 05:47:06] 2026-05-01 09:47:05,587 [wrapper] pilotpid: 1972535
[2026-05-01 05:47:06] 2026-05-01 09:47:05,612 [wrapper] Pilot exit status: 0
[2026-05-01 05:47:06] 2026-05-01 09:47:05,689 [wrapper] pandaids: 7123133992
[2026-05-01 05:47:06] 2026-05-01 09:47:05,776 [wrapper] cleanup supervisor_pilot 3369631 1972536
[2026-05-01 05:47:06] 2026-05-01 09:47:05,781 [wrapper] Test setup, not cleaning
[2026-05-01 05:47:06] 2026-05-01 09:47:05,790 [wrapper] apfmon messages muted
[2026-05-01 05:47:06] 2026-05-01 09:47:05,795 [wrapper] ==== wrapper stdout END ====
[2026-05-01 05:47:06] 2026-05-01 09:47:05,799 [wrapper] ==== wrapper stderr END ====
[2026-05-01 05:47:06]  *** Error codes and diagnostics ***
[2026-05-01 05:47:06]     "exeErrorCode": 0,
[2026-05-01 05:47:06]     "pilotErrorCode": 0,
[2026-05-01 05:47:06]  *** Listing of results directory ***
[2026-05-01 05:47:06] total 458296
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas    683926 Apr 30 20:21 pilot3.tar.gz
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas      5631 Apr 30 20:43 queuedata.json
[2026-05-01 05:47:06] -rwx------. 1 boincer umatlas     36322 Apr 30 20:43 runpilot2-wrapper.sh
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas       100 May  1 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 05:47:06] -rwxr-xr-x. 1 boincer umatlas      7986 May  1 00:03 run_atlas
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas       105 May  1 00:03 job.xml
[2026-05-01 05:47:06] -rw-r--r--. 2 boincer umatlas 287261248 May  1 00:03 EVNT.50017333._000008.pool.root.1
[2026-05-01 05:47:06] -rw-r--r--. 2 boincer umatlas     15667 May  1 00:03 start_atlas.sh
[2026-05-01 05:47:06] drwxrwx--x. 2 boincer umatlas      4096 May  1 00:03 shared
[2026-05-01 05:47:06] -rw-r--r--. 2 boincer umatlas    697397 May  1 00:03 input.tar.gz
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas         0 May  1 00:03 boinc_lockfile
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas      2526 May  1 00:03 pandaJob.out
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas        57 May  1 00:03 setup.sh.local
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas   1001814 May  1 00:04 agis_schedconf.cvmfs.json
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas       442 May  1 00:05 workernode_map.json
[2026-05-01 05:47:06] drwx------. 5 boincer umatlas      4096 May  1 00:05 pilot3
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas      6756 May  1 05:40 init_data.xml
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas 173293633 May  1 05:45 HITS.50017337._000196.pool.root.1
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas       488 May  1 05:45 boinc_task_state.xml
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas      1048 May  1 05:46 memory_monitor_summary.json
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas   1508687 May  1 05:46 agis_ddmendpoints.agis.ALL.json
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas    514777 May  1 05:46 log.50017337._000196.job.log.tgz.1
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas      6412 May  1 05:46 heartbeat_new.json
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas      6303 May  1 05:46 heartbeat.json
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas        95 May  1 05:47 pilot_heartbeat.json
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas      4823 May  1 05:47 pilotlog.txt
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas      8192 May  1 05:47 boinc_mmap_file
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas   1785701 May  1 05:47 log.50017337._000196.job.log.1
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas        28 May  1 05:47 wrapper_checkpoint.txt
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas       357 May  1 05:47 output.list
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas       410 May  1 05:47 runtime_log
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas   2314240 May  1 05:47 result.tar.gz
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas      8972 May  1 05:47 runtime_log.err
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas       661 May  1 05:47 f73ca00a3f96.diag
[2026-05-01 05:47:06] -rw-r--r--. 1 boincer umatlas     21295 May  1 05:47 stderr.txt
[2026-05-01 05:47:06] HITS file was successfully produced:
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas 173293633 May  1 05:45 shared/HITS.pool.root.1
[2026-05-01 05:47:06]  *** Contents of shared directory: ***
[2026-05-01 05:47:06] total 452736
[2026-05-01 05:47:06] -rw-r--r--. 2 boincer umatlas 287261248 May  1 00:03 ATLAS.root_0
[2026-05-01 05:47:06] -rw-r--r--. 2 boincer umatlas     15667 May  1 00:03 start_atlas.sh
[2026-05-01 05:47:06] -rw-r--r--. 2 boincer umatlas    697397 May  1 00:03 input.tar.gz
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas 173293633 May  1 05:45 HITS.pool.root.1
[2026-05-01 05:47:06] -rw-------. 1 boincer umatlas   2314240 May  1 05:47 result.tar.gz
05:47:07 (1961514): run_atlas exited; CPU time 77521.995181
05:47:07 (1961514): called boinc_finish(0)

</stderr_txt>
]]>

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