Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:32:41 (12735): wrapper (7.7.26015): starting
15:32:41 (12735): wrapper: running run_atlas (--nthreads 8)
[2026-05-01 15:32:41] Arguments: --nthreads 8
[2026-05-01 15:32:41] Threads: 8
[2026-05-01 15:32:41] Checking for CVMFS
[2026-05-01 15:32:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-01 15:32:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-01 15:32:47] Running cvmfs_config stat atlas.cern.ch
[2026-05-01 15:32:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-01 15:32:49] 2.11.2.0 2379 22826 100716 159096 3 54 19619367 25165824 96 130560 0 7975251 99.885 3139157 4201 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-01 15:32:49] CVMFS is ok
[2026-05-01 15:32:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 15:32:49] Checking for apptainer binary...
[2026-05-01 15:32:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-01 15:32:49] Running /usr/bin/apptainer --version
[2026-05-01 15:32:49] apptainer version 1.3.2-1.el7
[2026-05-01 15:32:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 15:33:05] cg-vwn406.simple-grid.lan
[2026-05-01 15:33:05] apptainer works
[2026-05-01 15:33:05] Set ATHENA_PROC_NUMBER=8
[2026-05-01 15:33:05] Set ATHENA_CORE_NUMBER=8
[2026-05-01 15:33:05] Starting ATLAS job with PandaID=7123133738
[2026-05-01 15:33:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 21:55:24]  *** The last 200 lines of the pilot log: ***
[2026-05-01 21:55:24] 2026-05-01 19:54:20,304 | INFO     | chi2: 0.8865356254793304
[2026-05-01 21:55:24] 2026-05-01 19:54:20,305 | INFO     | current chi2=0.8865356254793304 (change=79.8679424257081 %)
[2026-05-01 21:55:24] 2026-05-01 19:54:20,305 | INFO     | sum of square deviations: 12955770358.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,309 | INFO     | sum of deviations: 30607965425.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,309 | INFO     | mean x (centered): 0.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,309 | INFO     | mean y: 2505244.74351585
[2026-05-01 21:55:24] 2026-05-01 19:54:20,310 | INFO     | intersect: 2505244.74351585
[2026-05-01 21:55:24] 2026-05-01 19:54:20,310 | INFO     | chi2: 0.03733437318162743
[2026-05-01 21:55:24] 2026-05-01 19:54:20,310 | INFO     | current chi2=0.03733437318162743 (change=95.78873402166533 %)
[2026-05-01 21:55:24] 2026-05-01 19:54:20,311 | INFO     | sum of square deviations: 12403750705.5
[2026-05-01 21:55:24] 2026-05-01 19:54:20,315 | INFO     | sum of deviations: 28709100237.500004
[2026-05-01 21:55:24] 2026-05-01 19:54:20,315 | INFO     | mean x (centered): 0.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,315 | INFO     | mean y: 2505760.0614035088
[2026-05-01 21:55:24] 2026-05-01 19:54:20,316 | INFO     | intersect: 2505760.0614035088
[2026-05-01 21:55:24] 2026-05-01 19:54:20,316 | INFO     | chi2: 0.027468072871288718
[2026-05-01 21:55:24] 2026-05-01 19:54:20,316 | INFO     | current chi2=0.027468072871288718 (change=26.426854047717097 %)
[2026-05-01 21:55:24] 2026-05-01 19:54:20,317 | INFO     | sum of square deviations: 11867638328.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,321 | INFO     | sum of deviations: 29782716006.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,321 | INFO     | mean x (centered): 0.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,321 | INFO     | mean y: 2505469.721068249
[2026-05-01 21:55:24] 2026-05-01 19:54:20,321 | INFO     | intersect: 2505469.721068249
[2026-05-01 21:55:24] 2026-05-01 19:54:20,322 | INFO     | chi2: 0.009330721574738653
[2026-05-01 21:55:24] 2026-05-01 19:54:20,322 | INFO     | current chi2=0.009330721574738653 (change=66.03066542577989 %)
[2026-05-01 21:55:24] 2026-05-01 19:54:20,323 | INFO     | sum of square deviations: 11347200663.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,326 | INFO     | sum of deviations: 25245491140.500004
[2026-05-01 21:55:24] 2026-05-01 19:54:20,327 | INFO     | mean x (centered): 0.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,327 | INFO     | mean y: 2506798.575301205
[2026-05-01 21:55:24] 2026-05-01 19:54:20,327 | INFO     | intersect: 2506798.575301205
[2026-05-01 21:55:24] 2026-05-01 19:54:20,328 | INFO     | chi2: 0.005897973963502019
[2026-05-01 21:55:24] 2026-05-01 19:54:20,328 | INFO     | current chi2=0.005897973963502019 (change=36.78973360999449 %)
[2026-05-01 21:55:24] 2026-05-01 19:54:20,328 | INFO     | sum of square deviations: 10842205148.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,332 | INFO     | sum of deviations: 21909702511.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,332 | INFO     | mean x (centered): 0.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,332 | INFO     | mean y: 2507805.339449541
[2026-05-01 21:55:24] 2026-05-01 19:54:20,333 | INFO     | intersect: 2507805.339449541
[2026-05-01 21:55:24] 2026-05-01 19:54:20,333 | INFO     | chi2: 0.00422804142854285
[2026-05-01 21:55:24] 2026-05-01 19:54:20,334 | INFO     | current chi2=0.00422804142854285 (change=28.313664069951567 %)
[2026-05-01 21:55:24] 2026-05-01 19:54:20,334 | INFO     | sum of square deviations: 10352419220.5
[2026-05-01 21:55:24] 2026-05-01 19:54:20,338 | INFO     | sum of deviations: 19258540671.49998
[2026-05-01 21:55:24] 2026-05-01 19:54:20,338 | INFO     | mean x (centered): 0.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,338 | INFO     | mean y: 2508630.8105590064
[2026-05-01 21:55:24] 2026-05-01 19:54:20,338 | INFO     | intersect: 2508630.8105590064
[2026-05-01 21:55:24] 2026-05-01 19:54:20,339 | INFO     | chi2: 0.003274532891265803
[2026-05-01 21:55:24] 2026-05-01 19:54:20,339 | INFO     | current chi2=0.003274532891265803 (change=22.5520150025035 %)
[2026-05-01 21:55:24] 2026-05-01 19:54:20,339 | INFO     | left removable region: 40
[2026-05-01 21:55:24] 2026-05-01 19:54:20,340 | INFO     | sum of square deviations: 9784425315.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,343 | INFO     | sum of deviations: 18460869352.50001
[2026-05-01 21:55:24] 2026-05-01 19:54:20,343 | INFO     | mean x (centered): 0.0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,343 | INFO     | mean y: 2508373.768987342
[2026-05-01 21:55:24] 2026-05-01 19:54:20,344 | INFO     | intersect: 2508373.768987342
[2026-05-01 21:55:24] 2026-05-01 19:54:20,344 | INFO     | chi2: 0.003254592633794893
[2026-05-01 21:55:24] 2026-05-01 19:54:20,344 | INFO     | current memory leak: 1.89 B/s (using 316 data points, chi2=0.00)
[2026-05-01 21:55:24] 2026-05-01 19:54:20,345 | INFO     | could have reported an average CPU frequency of 1999 MHz (16 samples)
[2026-05-01 21:55:24] 2026-05-01 19:54:20,345 | INFO     | ..............................
[2026-05-01 21:55:24] 2026-05-01 19:54:20,346 | INFO     | . Timing measurements:
[2026-05-01 21:55:24] 2026-05-01 19:54:20,346 | INFO     | . get job = 0 s
[2026-05-01 21:55:24] 2026-05-01 19:54:20,346 | INFO     | . initial setup = 117 s
[2026-05-01 21:55:24] 2026-05-01 19:54:20,346 | INFO     | . payload setup = 259 s
[2026-05-01 21:55:24] 2026-05-01 19:54:20,346 | INFO     | . stage-in = 0 s
[2026-05-01 21:55:24] 2026-05-01 19:54:20,346 | INFO     | . payload execution = 22197 s
[2026-05-01 21:55:24] 2026-05-01 19:54:20,346 | INFO     | . stage-out = 1 s
[2026-05-01 21:55:24] 2026-05-01 19:54:20,346 | INFO     | . log creation = 0 s
[2026-05-01 21:55:24] 2026-05-01 19:54:20,346 | INFO     | ..............................
[2026-05-01 21:55:24] 2026-05-01 19:54:20,805 | INFO     | 
[2026-05-01 21:55:24] 2026-05-01 19:54:20,806 | INFO     | job summary report
[2026-05-01 21:55:24] 2026-05-01 19:54:20,806 | INFO     | --------------------------------------------------
[2026-05-01 21:55:24] 2026-05-01 19:54:20,806 | INFO     | PanDA job id: 7123133738
[2026-05-01 21:55:24] 2026-05-01 19:54:20,806 | INFO     | task id: 50017280
[2026-05-01 21:55:24] 2026-05-01 19:54:20,806 | INFO     | errors: (none)
[2026-05-01 21:55:24] 2026-05-01 19:54:20,806 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 21:55:24] 2026-05-01 19:54:20,807 | INFO     | pilot state: finished 
[2026-05-01 21:55:24] 2026-05-01 19:54:20,807 | INFO     | transexitcode: 0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,807 | INFO     | exeerrorcode: 0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,807 | INFO     | exeerrordiag: 
[2026-05-01 21:55:24] 2026-05-01 19:54:20,807 | INFO     | exitcode: 0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,807 | INFO     | exitmsg: OK
[2026-05-01 21:55:24] 2026-05-01 19:54:20,807 | INFO     | cpuconsumptiontime: 100441 s
[2026-05-01 21:55:24] 2026-05-01 19:54:20,807 | INFO     | nevents: 400
[2026-05-01 21:55:24] 2026-05-01 19:54:20,807 | INFO     | neventsw: 0
[2026-05-01 21:55:24] 2026-05-01 19:54:20,808 | INFO     | pid: 21176
[2026-05-01 21:55:24] 2026-05-01 19:54:20,808 | INFO     | pgrp: 21176
[2026-05-01 21:55:24] 2026-05-01 19:54:20,808 | INFO     | corecount: 8
[2026-05-01 21:55:24] 2026-05-01 19:54:20,808 | INFO     | event service: False
[2026-05-01 21:55:24] 2026-05-01 19:54:20,808 | INFO     | sizes: {0: 2275322, 1: 2275723, 2: 2277151, 12: 2277179, 22461: 2311686, 22464: 2320684, 22465: 2320868, 22468: 2321062}
[2026-05-01 21:55:24] 2026-05-01 19:54:20,808 | INFO     | --------------------------------------------------
[2026-05-01 21:55:24] 2026-05-01 19:54:20,808 | INFO     | 
[2026-05-01 21:55:24] 2026-05-01 19:54:20,809 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-05-01 21:55:24] 2026-05-01 19:54:20,834 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,834 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,834 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,835 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,835 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,835 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,835 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,835 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,835 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,835 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,835 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,835 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,836 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,836 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,836 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,836 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,836 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 21:55:24] 2026-05-01 19:54:20,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,836 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 21:55:24] 2026-05-01 19:54:20,837 | INFO     | job 7123133738 has completed (purged errors)
[2026-05-01 21:55:24] 2026-05-01 19:54:20,837 | INFO     | overall cleanup function is called
[2026-05-01 21:55:24] 2026-05-01 19:54:21,844 | INFO     | --- collectZombieJob: --- 10, [21176]
[2026-05-01 21:55:24] 2026-05-01 19:54:21,845 | INFO     | zombie collector waiting for pid 21176
[2026-05-01 21:55:24] 2026-05-01 19:54:21,845 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 21:55:24] 2026-05-01 19:54:21,845 | INFO     | collected zombie processes
[2026-05-01 21:55:24] 2026-05-01 19:54:21,845 | INFO     | will attempt to kill all subprocesses of pid=21176
[2026-05-01 21:55:24] 2026-05-01 19:54:21,909 | INFO     | process IDs to be killed: [21176] (in reverse order)
[2026-05-01 21:55:24] 2026-05-01 19:54:21,974 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 21:55:24] 2026-05-01 19:54:21,974 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 21:55:24] 2026-05-01 19:54:21,977 | INFO     | did not find any defunct processes belonging to 21176
[2026-05-01 21:55:24] 2026-05-01 19:54:21,979 | INFO     | did not find any defunct processes belonging to 21176
[2026-05-01 21:55:24] 2026-05-01 19:54:21,979 | INFO     | Ready for new job
[2026-05-01 21:55:24] 2026-05-01 19:54:21,981 | INFO     | ***************************************
[2026-05-01 21:55:24] 2026-05-01 19:54:21,981 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 21:55:24] 2026-05-01 19:54:21,981 | INFO     | ***************************************
[2026-05-01 21:55:24] 2026-05-01 19:54:21,981 | INFO     | 
[2026-05-01 21:55:24] 2026-05-01 19:54:21,982 | INFO     | pilot is running in a VM
[2026-05-01 21:55:24] 2026-05-01 19:54:21,982 | INFO     | architecture information:
[2026-05-01 21:55:24] 2026-05-01 19:54:21,983 | INFO     | executing command: cat /etc/os-release
[2026-05-01 21:55:24] 2026-05-01 19:54:22,000 | INFO     | cat /etc/os-release:
[2026-05-01 21:55:24] NAME="CentOS Linux"
[2026-05-01 21:55:24] VERSION="7 (Core)"
[2026-05-01 21:55:24] ID="centos"
[2026-05-01 21:55:24] ID_LIKE="rhel fedora"
[2026-05-01 21:55:24] VERSION_ID="7"
[2026-05-01 21:55:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 21:55:24] ANSI_COLOR="0;31"
[2026-05-01 21:55:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 21:55:24] HOME_URL="https://www.centos.org/"
[2026-05-01 21:55:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 21:55:24] 
[2026-05-01 21:55:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 21:55:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 21:55:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 21:55:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 21:55:24] 
[2026-05-01 21:55:24] 2026-05-01 19:54:22,000 | INFO     | ***************************************
[2026-05-01 21:55:24] 2026-05-01 19:54:22,503 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-05-01 21:55:24] 2026-05-01 19:54:22,558 | INFO     | sufficient remaining disk space (497374199808 B)
[2026-05-01 21:55:24] 2026-05-01 19:54:22,558 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 21:55:24] 2026-05-01 19:54:22,558 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 21:55:24] 2026-05-01 19:54:22,558 | INFO     | update_server=False
[2026-05-01 21:55:24] 2026-05-01 19:54:22,558 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 21:55:24] 2026-05-01 19:54:22,823 | INFO     | all payload control threads have been joined
[2026-05-01 21:55:24] 2026-05-01 19:54:22,910 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-01 21:55:24] 2026-05-01 19:54:22,910 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-01 21:55:24] 2026-05-01 19:54:22,910 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 21:55:24] 2026-05-01 19:54:22,910 | INFO     | will abort loop
[2026-05-01 21:55:24] 2026-05-01 19:54:23,494 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 21:55:24] 2026-05-01 19:54:23,564 | INFO     | [job] retrieve thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:23,577 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:23,584 | INFO     | [data] copytool_in thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:23,661 | INFO     | all data control threads have been joined
[2026-05-01 21:55:24] 2026-05-01 19:54:23,825 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 21:55:24] 2026-05-01 19:54:23,829 | INFO     | [payload] control thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:23,848 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:23,916 | INFO     | [job] job monitor thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:24,147 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:24,158 | INFO     | all job control threads have been joined
[2026-05-01 21:55:24] 2026-05-01 19:54:24,279 | INFO     | [job] validate thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:24,667 | INFO     | [data] control thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:24,748 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:24,815 | INFO     | [payload] failed_post thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:25,006 | INFO     | [payload] validate_post thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:25,163 | INFO     | [job] control thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:25,474 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 21:55:24] 2026-05-01 19:54:25,831 | INFO     | [data] copytool_out thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:26,480 | INFO     | [job] queue monitor thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:27,503 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 21:55:24] 2026-05-01 19:54:53,433 | INFO     | PID=16719 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-01 21:55:24] 2026-05-01 19:54:53,434 | INFO     | .. there are 2 such processes running
[2026-05-01 21:55:24] 2026-05-01 19:54:53,434 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 21:55:24] 2026-05-01 19:54:53,434 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 21:55:24] 2026-05-01 19:54:53,434 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 21:55:24] 2026-05-01 19:55:17,390 | INFO     | [monitor] cgroup control has ended
[2026-05-01 21:55:24] 2026-05-01 19:55:19,142 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139714212648768)>', '<ExcThread(monitor, started 139713247692544)>']
[2026-05-01 21:55:24] 2026-05-01 19:55:19,569 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 21:55:24] 2026-05-01 19:55:19,570 | INFO     | [monitor] control thread has ended
[2026-05-01 21:55:24] 2026-05-01 19:55:24,167 | INFO     | all workflow threads have been joined
[2026-05-01 21:55:24] 2026-05-01 19:55:24,168 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 21:55:24] 2026-05-01 19:55:24,168 | INFO     | traces error code: 0
[2026-05-01 21:55:24] 2026-05-01 19:55:24,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 21:55:24] 2026-05-01 19:55:24,322 [wrapper] ==== pilot stdout END ====
[2026-05-01 21:55:24] 2026-05-01 19:55:24,336 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 21:55:24] 2026-05-01 19:55:24,352 [wrapper] pilotpid: 16719
[2026-05-01 21:55:24] 2026-05-01 19:55:24,360 [wrapper] Pilot exit status: 0
[2026-05-01 21:55:24] 2026-05-01 19:55:24,409 [wrapper] pandaids: 7123133738
[2026-05-01 21:55:24] 2026-05-01 19:55:24,450 [wrapper] cleanup supervisor_pilot 14055 16720
[2026-05-01 21:55:24] 2026-05-01 19:55:24,454 [wrapper] Test setup, not cleaning
[2026-05-01 21:55:24] 2026-05-01 19:55:24,466 [wrapper] apfmon messages muted
[2026-05-01 21:55:24] 2026-05-01 19:55:24,469 [wrapper] ==== wrapper stdout END ====
[2026-05-01 21:55:24] 2026-05-01 19:55:24,473 [wrapper] ==== wrapper stderr END ====
[2026-05-01 21:55:24]  *** Error codes and diagnostics ***
[2026-05-01 21:55:24]     "exeErrorCode": 0,
[2026-05-01 21:55:24]     "pilotErrorCode": 0,
[2026-05-01 21:55:24]  *** Listing of results directory ***
[2026-05-01 21:55:24] total 475168
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc    683926 May  1 02:21 pilot3.tar.gz
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc      5631 May  1 02:43 queuedata.json
[2026-05-01 21:55:24] -rwx------. 1 boinc boinc     36322 May  1 02:43 runpilot2-wrapper.sh
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc       100 May  1 15:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 21:55:24] -rwxr-xr-x. 1 boinc boinc      7986 May  1 15:32 run_atlas
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc       105 May  1 15:32 job.xml
[2026-05-01 21:55:24] -rw-r--r--. 2 boinc boinc 298797427 May  1 15:32 EVNT.50017273._000014.pool.root.1
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc      6307 May  1 15:32 init_data.xml
[2026-05-01 21:55:24] -rw-r--r--. 2 boinc boinc     15667 May  1 15:32 start_atlas.sh
[2026-05-01 21:55:24] drwxrwx--x. 2 boinc boinc        68 May  1 15:32 shared
[2026-05-01 21:55:24] -rw-r--r--. 2 boinc boinc    697415 May  1 15:32 input.tar.gz
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc         0 May  1 15:32 boinc_lockfile
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc      2563 May  1 15:33 pandaJob.out
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc       415 May  1 15:39 workernode_map.json
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc   1003083 May  1 15:39 agis_schedconf.cvmfs.json
[2026-05-01 21:55:24] drwx------. 5 boinc boinc      4096 May  1 15:39 pilot3
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc 178524407 May  1 21:53 HITS.50017280._000336.pool.root.1
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc       489 May  1 21:53 boinc_task_state.xml
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc        95 May  1 21:54 pilot_heartbeat.json
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc      1029 May  1 21:54 memory_monitor_summary.json
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc   1508687 May  1 21:54 agis_ddmendpoints.agis.ALL.json
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc    471844 May  1 21:54 log.50017280._000336.job.log.tgz.1
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc      6339 May  1 21:54 heartbeat_new.json
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc      6230 May  1 21:54 heartbeat.json
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc        29 May  1 21:54 wrapper_checkpoint.txt
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc      8192 May  1 21:54 boinc_mmap_file
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc      5069 May  1 21:55 pilotlog.txt
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc   2086824 May  1 21:55 log.50017280._000336.job.log.1
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc       357 May  1 21:55 output.list
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc       410 May  1 21:55 runtime_log
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc   2580480 May  1 21:55 result.tar.gz
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc      8439 May  1 21:55 runtime_log.err
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc       657 May  1 21:55 f73045a43274.diag
[2026-05-01 21:55:24] -rw-r--r--. 1 boinc boinc     20566 May  1 21:55 stderr.txt
[2026-05-01 21:55:24] HITS file was successfully produced:
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc 178524407 May  1 21:53 shared/HITS.pool.root.1
[2026-05-01 21:55:24]  *** Contents of shared directory: ***
[2026-05-01 21:55:24] total 469360
[2026-05-01 21:55:24] -rw-r--r--. 2 boinc boinc 298797427 May  1 15:32 ATLAS.root_0
[2026-05-01 21:55:24] -rw-r--r--. 2 boinc boinc     15667 May  1 15:32 start_atlas.sh
[2026-05-01 21:55:24] -rw-r--r--. 2 boinc boinc    697415 May  1 15:32 input.tar.gz
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc 178524407 May  1 21:53 HITS.pool.root.1
[2026-05-01 21:55:24] -rw-------. 1 boinc boinc   2580480 May  1 21:55 result.tar.gz
21:55:26 (12735): run_atlas exited; CPU time 100656.987363
21:55:26 (12735): called boinc_finish(0)

</stderr_txt>
]]>

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