Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:09:21 (3438562): wrapper (7.7.26015): starting
07:09:21 (3438562): wrapper: running run_atlas (--nthreads 4)
[2026-05-04 07:09:21] Arguments: --nthreads 4
[2026-05-04 07:09:21] Threads: 4
[2026-05-04 07:09:21] Checking for CVMFS
[2026-05-04 07:09:21] No cvmfs_config command found, will try listing directly
[2026-05-04 07:09:21] CVMFS is ok
[2026-05-04 07:09:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-04 07:09:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-04 07:09:21] Further information can be found at the LHC@home message board.
[2026-05-04 07:09:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-04 07:09:21] Checking for apptainer binary...
[2026-05-04 07:09:21] which: no apptainer in ((null))
[2026-05-04 07:09:21] apptainer is not installed, using version from CVMFS
[2026-05-04 07:09:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-04 07:09:21] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot100/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2026-05-04 07:09:21] apptainer works
[2026-05-04 07:09:21] Set ATHENA_PROC_NUMBER=4
[2026-05-04 07:09:21] Set ATHENA_CORE_NUMBER=4
[2026-05-04 07:09:21] Starting ATLAS job with PandaID=7123014364
[2026-05-04 07:09:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot100/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-04 11:09:19]  *** The last 200 lines of the pilot log: ***
[2026-05-04 11:09:19] 2026-05-04 09:08:15,497 | INFO     | mean y: 2345522.3258928573
[2026-05-04 11:09:19] 2026-05-04 09:08:15,497 | INFO     | intersect: 2345522.3258928573
[2026-05-04 11:09:19] 2026-05-04 09:08:15,498 | INFO     | chi2: 0.001669830209746144
[2026-05-04 11:09:19] 2026-05-04 09:08:15,498 | INFO     | current chi2=0.001669830209746144 (change=85.10023151725399 %)
[2026-05-04 11:09:19] 2026-05-04 09:08:15,498 | INFO     | sum of square deviations: 3256879670.0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,500 | INFO     | sum of deviations: 5224215314.000001
[2026-05-04 11:09:19] 2026-05-04 09:08:15,500 | INFO     | mean x (centered): 0.0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,500 | INFO     | mean y: 2346370.109589041
[2026-05-04 11:09:19] 2026-05-04 09:08:15,500 | INFO     | intersect: 2346370.109589041
[2026-05-04 11:09:19] 2026-05-04 09:08:15,500 | INFO     | chi2: 0.001053376122474625
[2026-05-04 11:09:19] 2026-05-04 09:08:15,500 | INFO     | current chi2=0.001053376122474625 (change=36.91717179827735 %)
[2026-05-04 11:09:19] 2026-05-04 09:08:15,501 | INFO     | sum of square deviations: 3038856977.5
[2026-05-04 11:09:19] 2026-05-04 09:08:15,502 | INFO     | sum of deviations: 4263991225.4999995
[2026-05-04 11:09:19] 2026-05-04 09:08:15,502 | INFO     | mean x (centered): 0.0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,502 | INFO     | mean y: 2347041.0981308413
[2026-05-04 11:09:19] 2026-05-04 09:08:15,502 | INFO     | intersect: 2347041.0981308413
[2026-05-04 11:09:19] 2026-05-04 09:08:15,503 | INFO     | chi2: 0.0007070684986556549
[2026-05-04 11:09:19] 2026-05-04 09:08:15,503 | INFO     | current chi2=0.0007070684986556549 (change=32.875970551279735 %)
[2026-05-04 11:09:19] 2026-05-04 09:08:15,503 | INFO     | sum of square deviations: 2830787960.0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,504 | INFO     | sum of deviations: 3456767581.0000005
[2026-05-04 11:09:19] 2026-05-04 09:08:15,505 | INFO     | mean x (centered): 0.0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,505 | INFO     | mean y: 2347632.3205741625
[2026-05-04 11:09:19] 2026-05-04 09:08:15,505 | INFO     | intersect: 2347632.3205741625
[2026-05-04 11:09:19] 2026-05-04 09:08:15,505 | INFO     | chi2: 0.00045480480557412374
[2026-05-04 11:09:19] 2026-05-04 09:08:15,505 | INFO     | current chi2=0.00045480480557412374 (change=35.67740516812142 %)
[2026-05-04 11:09:19] 2026-05-04 09:08:15,505 | INFO     | sum of square deviations: 2632440055.0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,507 | INFO     | sum of deviations: 2885332055.5
[2026-05-04 11:09:19] 2026-05-04 09:08:15,507 | INFO     | mean x (centered): 0.0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,507 | INFO     | mean y: 2348070.544117647
[2026-05-04 11:09:19] 2026-05-04 09:08:15,507 | INFO     | intersect: 2348070.544117647
[2026-05-04 11:09:19] 2026-05-04 09:08:15,507 | INFO     | chi2: 0.0003325741442852519
[2026-05-04 11:09:19] 2026-05-04 09:08:15,508 | INFO     | current chi2=0.0003325741442852519 (change=26.875411119408405 %)
[2026-05-04 11:09:19] 2026-05-04 09:08:15,508 | INFO     | sum of square deviations: 2443580700.0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,509 | INFO     | sum of deviations: 2445676599.0000005
[2026-05-04 11:09:19] 2026-05-04 09:08:15,509 | INFO     | mean x (centered): 0.0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,509 | INFO     | mean y: 2348425.4924623114
[2026-05-04 11:09:19] 2026-05-04 09:08:15,509 | INFO     | intersect: 2348425.4924623114
[2026-05-04 11:09:19] 2026-05-04 09:08:15,510 | INFO     | chi2: 0.0002760977599412664
[2026-05-04 11:09:19] 2026-05-04 09:08:15,510 | INFO     | current chi2=0.0002760977599412664 (change=16.98159201923563 %)
[2026-05-04 11:09:19] 2026-05-04 09:08:15,510 | INFO     | left removable region: 35
[2026-05-04 11:09:19] 2026-05-04 09:08:15,510 | INFO     | sum of square deviations: 2229146912.0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,511 | INFO     | sum of deviations: 2267183645.0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,511 | INFO     | mean x (centered): 0.0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,511 | INFO     | mean y: 2348273.134715026
[2026-05-04 11:09:19] 2026-05-04 09:08:15,512 | INFO     | intersect: 2348273.134715026
[2026-05-04 11:09:19] 2026-05-04 09:08:15,512 | INFO     | chi2: 0.00027487569769559276
[2026-05-04 11:09:19] 2026-05-04 09:08:15,512 | INFO     | current memory leak: 1.02 B/s (using 193 data points, chi2=0.00)
[2026-05-04 11:09:19] 2026-05-04 09:08:15,512 | INFO     | could have reported an average CPU frequency of 2658 MHz (11 samples)
[2026-05-04 11:09:19] 2026-05-04 09:08:15,512 | INFO     | ..............................
[2026-05-04 11:09:19] 2026-05-04 09:08:15,513 | INFO     | . Timing measurements:
[2026-05-04 11:09:19] 2026-05-04 09:08:15,513 | INFO     | . get job = 0 s
[2026-05-04 11:09:19] 2026-05-04 09:08:15,513 | INFO     | . initial setup = 9 s
[2026-05-04 11:09:19] 2026-05-04 09:08:15,513 | INFO     | . payload setup = 17 s
[2026-05-04 11:09:19] 2026-05-04 09:08:15,513 | INFO     | . stage-in = 0 s
[2026-05-04 11:09:19] 2026-05-04 09:08:15,513 | INFO     | . payload execution = 14271 s
[2026-05-04 11:09:19] 2026-05-04 09:08:15,513 | INFO     | . stage-out = 1 s
[2026-05-04 11:09:19] 2026-05-04 09:08:15,513 | INFO     | . log creation = 0 s
[2026-05-04 11:09:19] 2026-05-04 09:08:15,513 | INFO     | ..............................
[2026-05-04 11:09:19] 2026-05-04 09:08:15,610 | INFO     | 
[2026-05-04 11:09:19] 2026-05-04 09:08:15,611 | INFO     | job summary report
[2026-05-04 11:09:19] 2026-05-04 09:08:15,611 | INFO     | --------------------------------------------------
[2026-05-04 11:09:19] 2026-05-04 09:08:15,611 | INFO     | PanDA job id: 7123014364
[2026-05-04 11:09:19] 2026-05-04 09:08:15,611 | INFO     | task id: 50017180
[2026-05-04 11:09:19] 2026-05-04 09:08:15,611 | INFO     | errors: (none)
[2026-05-04 11:09:19] 2026-05-04 09:08:15,611 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-04 11:09:19] 2026-05-04 09:08:15,611 | INFO     | pilot state: finished 
[2026-05-04 11:09:19] 2026-05-04 09:08:15,611 | INFO     | transexitcode: 0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,611 | INFO     | exeerrorcode: 0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,611 | INFO     | exeerrordiag: 
[2026-05-04 11:09:19] 2026-05-04 09:08:15,611 | INFO     | exitcode: 0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,612 | INFO     | exitmsg: OK
[2026-05-04 11:09:19] 2026-05-04 09:08:15,612 | INFO     | cpuconsumptiontime: 52906 s
[2026-05-04 11:09:19] 2026-05-04 09:08:15,612 | INFO     | nevents: 400
[2026-05-04 11:09:19] 2026-05-04 09:08:15,612 | INFO     | neventsw: 0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,612 | INFO     | pid: 3449511
[2026-05-04 11:09:19] 2026-05-04 09:08:15,612 | INFO     | pgrp: 3449511
[2026-05-04 11:09:19] 2026-05-04 09:08:15,612 | INFO     | corecount: 4
[2026-05-04 11:09:19] 2026-05-04 09:08:15,612 | INFO     | event service: False
[2026-05-04 11:09:19] 2026-05-04 09:08:15,612 | INFO     | sizes: {0: 2275288, 1: 2277117, 11: 2277117, 14290: 2308356, 14293: 2312463, 14295: 2312519, 14296: 2312841}
[2026-05-04 11:09:19] 2026-05-04 09:08:15,612 | INFO     | --------------------------------------------------
[2026-05-04 11:09:19] 2026-05-04 09:08:15,612 | INFO     | 
[2026-05-04 11:09:19] 2026-05-04 09:08:15,612 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot100/slots/0
[2026-05-04 11:09:19] 2026-05-04 09:08:15,653 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,653 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,653 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,653 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,654 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,654 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,654 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,654 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,654 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,654 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,654 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,654 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,654 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,654 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,655 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,655 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,655 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,655 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-04 11:09:19] 2026-05-04 09:08:15,655 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,655 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-04 11:09:19] 2026-05-04 09:08:15,655 | INFO     | job 7123014364 has completed (purged errors)
[2026-05-04 11:09:19] 2026-05-04 09:08:15,655 | INFO     | overall cleanup function is called
[2026-05-04 11:09:19] 2026-05-04 09:08:16,666 | INFO     | --- collectZombieJob: --- 10, [3449511]
[2026-05-04 11:09:19] 2026-05-04 09:08:16,667 | INFO     | zombie collector waiting for pid 3449511
[2026-05-04 11:09:19] 2026-05-04 09:08:16,667 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-04 11:09:19] 2026-05-04 09:08:16,667 | INFO     | collected zombie processes
[2026-05-04 11:09:19] 2026-05-04 09:08:16,667 | INFO     | will attempt to kill all subprocesses of pid=3449511
[2026-05-04 11:09:19] 2026-05-04 09:08:17,332 | INFO     | process IDs to be killed: [3449511] (in reverse order)
[2026-05-04 11:09:19] 2026-05-04 09:08:17,702 | WARNING  | found no corresponding commands to process id(s)
[2026-05-04 11:09:19] 2026-05-04 09:08:17,702 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-04 11:09:19] 2026-05-04 09:08:17,732 | INFO     | did not find any defunct processes belonging to 3449511
[2026-05-04 11:09:19] 2026-05-04 09:08:17,763 | INFO     | did not find any defunct processes belonging to 3449511
[2026-05-04 11:09:19] 2026-05-04 09:08:17,763 | INFO     | Ready for new job
[2026-05-04 11:09:19] 2026-05-04 09:08:17,765 | INFO     | ***************************************
[2026-05-04 11:09:19] 2026-05-04 09:08:17,765 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-04 11:09:19] 2026-05-04 09:08:17,765 | INFO     | ***************************************
[2026-05-04 11:09:19] 2026-05-04 09:08:17,766 | INFO     | 
[2026-05-04 11:09:19] 2026-05-04 09:08:17,774 | INFO     | architecture information:
[2026-05-04 11:09:19] 2026-05-04 09:08:17,775 | INFO     | executing command: cat /etc/os-release
[2026-05-04 11:09:19] 2026-05-04 09:08:17,796 | INFO     | cat /etc/os-release:
[2026-05-04 11:09:19] NAME="CentOS Linux"
[2026-05-04 11:09:19] VERSION="7 (Core)"
[2026-05-04 11:09:19] ID="centos"
[2026-05-04 11:09:19] ID_LIKE="rhel fedora"
[2026-05-04 11:09:19] VERSION_ID="7"
[2026-05-04 11:09:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-04 11:09:19] ANSI_COLOR="0;31"
[2026-05-04 11:09:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-04 11:09:19] HOME_URL="https://www.centos.org/"
[2026-05-04 11:09:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-04 11:09:19] 
[2026-05-04 11:09:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-04 11:09:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-04 11:09:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-04 11:09:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-04 11:09:19] 
[2026-05-04 11:09:19] 2026-05-04 09:08:17,796 | INFO     | ***************************************
[2026-05-04 11:09:19] 2026-05-04 09:08:18,299 | INFO     | executing command: df -mP /var/lib/boinc/var/slot100/slots/0
[2026-05-04 11:09:19] 2026-05-04 09:08:18,324 | INFO     | sufficient remaining disk space (233574498304 B)
[2026-05-04 11:09:19] 2026-05-04 09:08:18,325 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-04 11:09:19] 2026-05-04 09:08:18,325 | INFO     | current server update state: UPDATING_FINAL
[2026-05-04 11:09:19] 2026-05-04 09:08:18,325 | INFO     | update_server=False
[2026-05-04 11:09:19] 2026-05-04 09:08:18,325 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-04 11:09:19] 2026-05-04 09:08:18,326 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-04 11:09:19] 2026-05-04 09:08:18,555 | INFO     | all payload control threads have been joined
[2026-05-04 11:09:19] 2026-05-04 09:08:19,266 | INFO     | all data control threads have been joined
[2026-05-04 11:09:19] 2026-05-04 09:08:19,331 | INFO     | [job] retrieve thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:19,435 | INFO     | [job] create_data_payload thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:19,560 | INFO     | [payload] control thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:19,587 | INFO     | [payload] failed_post thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:19,679 | INFO     | all job control threads have been joined
[2026-05-04 11:09:19] 2026-05-04 09:08:19,753 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:19,778 | INFO     | [payload] execute_payloads thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:20,037 | INFO     | [payload] validate_pre thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:20,181 | WARNING  | process 3449511 can no longer be monitored (due to stat problems) - aborting
[2026-05-04 11:09:19] 2026-05-04 09:08:20,215 | INFO     | [data] copytool_in thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:20,272 | INFO     | [data] control thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:20,332 | INFO     | [data] copytool_out thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:20,537 | INFO     | [job] validate thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:20,594 | INFO     | [payload] validate_post thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:20,620 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-04 11:09:19] 2026-05-04 09:08:20,685 | INFO     | [job] control thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:20,749 | INFO     | using path: /var/lib/boinc/var/slot100/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 11:09:19] 2026-05-04 09:08:20,750 | INFO     | using path: /var/lib/boinc/var/slot100/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 11:09:19] 2026-05-04 09:08:20,750 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-05-04 11:09:19] 2026-05-04 09:08:20,750 | WARNING  | maxPSS not found in memory monitor output
[2026-05-04 11:09:19] 2026-05-04 09:08:21,424 | INFO     | number of running child processes to parent process 3449511: 1
[2026-05-04 11:09:19] 2026-05-04 09:08:21,425 | INFO     | maximum number of monitored processes: 6
[2026-05-04 11:09:19] 2026-05-04 09:08:21,425 | INFO     | aborting job monitoring since job object (job id=7123014364) has expired
[2026-05-04 11:09:19] 2026-05-04 09:08:21,425 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-04 11:09:19] 2026-05-04 09:08:21,425 | INFO     | will abort loop
[2026-05-04 11:09:19] 2026-05-04 09:08:21,460 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-04 11:09:19] 2026-05-04 09:08:21,625 | INFO     | [job] queue monitor thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:22,429 | INFO     | [job] job monitor thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:25,466 | INFO     | [data] queue_monitor thread has finished
[2026-05-04 11:09:19] 2026-05-04 09:08:49,019 | INFO     | PID=3443072 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-05-04 11:09:19] 2026-05-04 09:08:49,019 | INFO     | .. there are 27 such processes running
[2026-05-04 11:09:19] 2026-05-04 09:08:49,019 | INFO     | found 0 job(s) in 20 queues
[2026-05-04 11:09:19] 2026-05-04 09:08:49,019 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-04 11:09:19] 2026-05-04 09:08:49,019 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-04 11:09:19] 2026-05-04 09:09:12,398 | INFO     | [monitor] cgroup control has ended
[2026-05-04 11:09:19] 2026-05-04 09:09:14,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23346423113536)>', '<ExcThread(monitor, started 23346170541824)>']
[2026-05-04 11:09:19] 2026-05-04 09:09:15,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-04 11:09:19] 2026-05-04 09:09:15,156 | INFO     | [monitor] control thread has ended
[2026-05-04 11:09:19] 2026-05-04 09:09:19,489 | INFO     | all workflow threads have been joined
[2026-05-04 11:09:19] 2026-05-04 09:09:19,490 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-04 11:09:19] 2026-05-04 09:09:19,490 | INFO     | traces error code: 0
[2026-05-04 11:09:19] 2026-05-04 09:09:19,490 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-04 11:09:19] 2026-05-04 09:09:19,635 [wrapper] ==== pilot stdout END ====
[2026-05-04 11:09:19] 2026-05-04 09:09:19,640 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-04 11:09:19] 2026-05-04 09:09:19,644 [wrapper] pilotpid: 3443072
[2026-05-04 11:09:19] 2026-05-04 09:09:19,647 [wrapper] Pilot exit status: 0
[2026-05-04 11:09:19] 2026-05-04 09:09:19,662 [wrapper] pandaids: 7123014364
[2026-05-04 11:09:19] 2026-05-04 09:09:19,859 [wrapper] cleanup supervisor_pilot 4133063 3443073
[2026-05-04 11:09:19] 2026-05-04 09:09:19,864 [wrapper] Test setup, not cleaning
[2026-05-04 11:09:19] 2026-05-04 09:09:19,868 [wrapper] apfmon messages muted
[2026-05-04 11:09:19] 2026-05-04 09:09:19,872 [wrapper] ==== wrapper stdout END ====
[2026-05-04 11:09:19] 2026-05-04 09:09:19,876 [wrapper] ==== wrapper stderr END ====
[2026-05-04 11:09:19]  *** Error codes and diagnostics ***
[2026-05-04 11:09:19]     "exeErrorCode": 0,
[2026-05-04 11:09:19]     "pilotErrorCode": 0,
[2026-05-04 11:09:19]  *** Listing of results directory ***
[2026-05-04 11:09:19] total 491460
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc    683926 May  1 01:29 pilot3.tar.gz
[2026-05-04 11:09:19] -rwx------. 1 boinc boinc     36322 May  1 01:32 runpilot2-wrapper.sh
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc      5631 May  1 01:32 queuedata.json
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc       100 May  4 07:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-04 11:09:19] -rwxr-xr-x. 1 boinc boinc      7986 May  4 07:09 run_atlas
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc       105 May  4 07:09 job.xml
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc      6542 May  4 07:09 init_data.xml
[2026-05-04 11:09:19] -rw-r--r--. 2 boinc boinc 314208250 May  4 07:09 EVNT.50017178._000039.pool.root.1
[2026-05-04 11:09:19] -rw-r--r--. 2 boinc boinc     15667 May  4 07:09 start_atlas.sh
[2026-05-04 11:09:19] drwxrwx--x. 2 boinc boinc      4096 May  4 07:09 shared
[2026-05-04 11:09:19] -rw-r--r--. 2 boinc boinc    697395 May  4 07:09 input.tar.gz
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc         0 May  4 07:09 boinc_lockfile
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc      2517 May  4 07:09 pandaJob.out
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc   1003025 May  4 07:09 agis_schedconf.cvmfs.json
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc       444 May  4 07:09 workernode_map.json
[2026-05-04 11:09:19] drwx------. 5 boinc boinc      4096 May  4 07:09 pilot3
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc 181571061 May  4 11:07 HITS.50017180._000971.pool.root.1
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc       488 May  4 11:07 boinc_task_state.xml
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc        95 May  4 11:07 pilot_heartbeat.json
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc      1030 May  4 11:08 memory_monitor_summary.json
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc   1505932 May  4 11:08 agis_ddmendpoints.agis.ALL.json
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc    348788 May  4 11:08 log.50017180._000971.job.log.tgz.1
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc      6370 May  4 11:08 heartbeat_new.json
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc      6261 May  4 11:08 heartbeat.json
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc        28 May  4 11:09 wrapper_checkpoint.txt
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc      5703 May  4 11:09 pilotlog.txt
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc      8192 May  4 11:09 boinc_mmap_file
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc   1319339 May  4 11:09 log.50017180._000971.job.log.1
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc       357 May  4 11:09 output.list
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc       410 May  4 11:09 runtime_log
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc   1689600 May  4 11:09 result.tar.gz
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc      8845 May  4 11:09 runtime_log.err
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc       666 May  4 11:09 e67b06e8bd3d.diag
[2026-05-04 11:09:19] -rw-r--r--. 1 boinc boinc     20928 May  4 11:09 stderr.txt
[2026-05-04 11:09:19] HITS file was successfully produced:
[2026-05-04 11:09:19] -rw-------. 1 boinc boinc 181571061 May  4 11:07 shared/HITS.pool.root.1
[2026-05-04 11:09:19]  *** Contents of shared directory: ***
[2026-05-04 11:09:20] total 486520
[2026-05-04 11:09:20] -rw-r--r--. 2 boinc boinc 314208250 May  4 07:09 ATLAS.root_0
[2026-05-04 11:09:20] -rw-r--r--. 2 boinc boinc     15667 May  4 07:09 start_atlas.sh
[2026-05-04 11:09:20] -rw-r--r--. 2 boinc boinc    697395 May  4 07:09 input.tar.gz
[2026-05-04 11:09:20] -rw-------. 1 boinc boinc 181571061 May  4 11:07 HITS.pool.root.1
[2026-05-04 11:09:20] -rw-------. 1 boinc boinc   1689600 May  4 11:09 result.tar.gz
11:09:21 (3438562): run_atlas exited; CPU time 53711.162185
11:09:21 (3438562): called boinc_finish(0)

</stderr_txt>
]]>

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