Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:39:58 (1036043): wrapper (7.7.26015): starting
21:39:58 (1036043): wrapper: running run_atlas (--nthreads 8)
[2026-04-30 21:39:59] Arguments: --nthreads 8
[2026-04-30 21:39:59] Threads: 8
[2026-04-30 21:39:59] Checking for CVMFS
[2026-04-30 21:39:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-30 21:39:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-30 21:39:59] Running cvmfs_config stat atlas.cern.ch
[2026-04-30 21:39:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-30 21:39:59] 2.13.3.0 9160 633 75656 159072 2 427 35801507 39288832 8265 16776704 0 137872 99.737 18009 28631 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-30 21:39:59] CVMFS is ok
[2026-04-30 21:39:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-30 21:39:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-30 21:39:59] Further information can be found at the LHC@home message board.
[2026-04-30 21:39:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 21:39:59] Checking for apptainer binary...
[2026-04-30 21:39:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-30 21:39:59] Running /usr/bin/apptainer --version
[2026-04-30 21:39:59] apptainer version 1.4.5-3.el9
[2026-04-30 21:39:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 21:39:59] c-211-26.aglt2.org
[2026-04-30 21:39:59] apptainer works
[2026-04-30 21:39:59] Set ATHENA_PROC_NUMBER=8
[2026-04-30 21:39:59] Set ATHENA_CORE_NUMBER=8
[2026-04-30 21:39:59] Starting ATLAS job with PandaID=7123013899
[2026-04-30 21:39:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:40:09 (1036043): BOINC client no longer exists - exiting
21:40:09 (1036043): timer handler: client dead, exiting
21:52:17 (1064553): wrapper (7.7.26015): starting
21:52:17 (1064553): wrapper: running run_atlas (--nthreads 8)
[2026-04-30 21:52:17] Arguments: --nthreads 8
[2026-04-30 21:52:17] Threads: 8
[2026-04-30 21:52:17] This job has been restarted, cleaning up previous attempt
[2026-04-30 21:52:17] Checking for CVMFS
[2026-04-30 21:52:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-04-30 21:52:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-04-30 21:52:18] Running cvmfs_config stat atlas.cern.ch
[2026-04-30 21:52:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-04-30 21:52:18] 2.13.3.0 9160 645 74428 159072 1 427 36173563 39288833 4675 16776704 0 197903 99.813 18010 28587 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-04-30 21:52:18] CVMFS is ok
[2026-04-30 21:52:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-04-30 21:52:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-04-30 21:52:18] Further information can be found at the LHC@home message board.
[2026-04-30 21:52:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-04-30 21:52:18] Checking for apptainer binary...
[2026-04-30 21:52:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-04-30 21:52:18] Running /usr/bin/apptainer --version
[2026-04-30 21:52:18] apptainer version 1.4.5-3.el9
[2026-04-30 21:52:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-04-30 21:52:18] c-211-26.aglt2.org
[2026-04-30 21:52:18] apptainer works
[2026-04-30 21:52:18] Set ATHENA_PROC_NUMBER=8
[2026-04-30 21:52:18] Set ATHENA_CORE_NUMBER=8
[2026-04-30 21:52:18] Starting ATLAS job with PandaID=7123013899
[2026-04-30 21:52:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 12:19:07]  *** The last 200 lines of the pilot log: ***
[2026-05-01 12:19:07] 2026-05-01 16:18:04,932 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/3/workernode_map.json
[2026-05-01 12:19:07] 2026-05-01 16:18:04,932 | INFO     | this job has now completed (state=finished)
[2026-05-01 12:19:07] 2026-05-01 16:18:04,932 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-01 12:19:07] 2026-05-01 16:18:04,932 | INFO     | log transfer has been attempted: DONE
[2026-05-01 12:19:07] 2026-05-01 16:18:04,933 | INFO     | job 7123013899 has finished - writing final server update
[2026-05-01 12:19:07] 2026-05-01 16:18:04,933 | INFO     | total number of processed events: 400 (read)
[2026-05-01 12:19:07] 2026-05-01 16:18:04,941 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-7123013899/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 12:19:07] 2026-05-01 16:18:04,942 | INFO     | extracted standard info from prmon json
[2026-05-01 12:19:07] 2026-05-01 16:18:04,942 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 12:19:07] 2026-05-01 16:18:04,943 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 12:19:07] 2026-05-01 16:18:04,943 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 12:19:07] 2026-05-01 16:18:04,964 | INFO     | fitting pss+swap vs Time
[2026-05-01 12:19:07] 2026-05-01 16:18:04,965 | INFO     | sum of square deviations: 191104506525.25958
[2026-05-01 12:19:07] 2026-05-01 16:18:04,987 | INFO     | sum of deviations: 370945210365.0618
[2026-05-01 12:19:07] 2026-05-01 16:18:04,987 | INFO     | mean x (centered): 0.0
[2026-05-01 12:19:07] 2026-05-01 16:18:04,987 | INFO     | mean y: 2522948.8084606347
[2026-05-01 12:19:07] 2026-05-01 16:18:04,987 | INFO     | intersect: 2522948.8084606347
[2026-05-01 12:19:07] 2026-05-01 16:18:04,988 | INFO     | chi2: 1.237411099614079
[2026-05-01 12:19:07] 2026-05-01 16:18:04,990 | INFO     | sum of square deviations: 187755881969.67926
[2026-05-01 12:19:07] 2026-05-01 16:18:05,011 | INFO     | sum of deviations: 365936710735.384
[2026-05-01 12:19:07] 2026-05-01 16:18:05,012 | INFO     | mean x (centered): 0.0
[2026-05-01 12:19:07] 2026-05-01 16:18:05,012 | INFO     | mean y: 2522720.573286052
[2026-05-01 12:19:07] 2026-05-01 16:18:05,012 | INFO     | intersect: 2522720.573286052
[2026-05-01 12:19:07] 2026-05-01 16:18:05,013 | INFO     | chi2: 1.2373819078945745
[2026-05-01 12:19:07] 2026-05-01 16:18:05,014 | INFO     | current chi2=1.2373819078945745 (change=0.0023590963030520142 %)
[2026-05-01 12:19:07] 2026-05-01 16:18:05,014 | INFO     | right removable region: 845
[2026-05-01 12:19:07] 2026-05-01 16:18:05,015 | INFO     | sum of square deviations: 187755707326.80362
[2026-05-01 12:19:07] 2026-05-01 16:18:05,037 | INFO     | sum of deviations: 251291038462.64023
[2026-05-01 12:19:07] 2026-05-01 16:18:05,037 | INFO     | mean x (centered): 0.0
[2026-05-01 12:19:07] 2026-05-01 16:18:05,037 | INFO     | mean y: 2528383.8392434986
[2026-05-01 12:19:07] 2026-05-01 16:18:05,037 | INFO     | intersect: 2528383.8392434986
[2026-05-01 12:19:07] 2026-05-01 16:18:05,039 | INFO     | chi2: 0.04791245018140135
[2026-05-01 12:19:07] 2026-05-01 16:18:05,039 | INFO     | current chi2=0.04791245018140135 (change=96.12800869522309 %)
[2026-05-01 12:19:07] 2026-05-01 16:18:05,040 | INFO     | sum of square deviations: 184446257703.337
[2026-05-01 12:19:07] 2026-05-01 16:18:05,060 | INFO     | sum of deviations: 225692409651.21124
[2026-05-01 12:19:07] 2026-05-01 16:18:05,060 | INFO     | mean x (centered): 0.0
[2026-05-01 12:19:07] 2026-05-01 16:18:05,060 | INFO     | mean y: 2529561.196195006
[2026-05-01 12:19:07] 2026-05-01 16:18:05,060 | INFO     | intersect: 2529561.196195006
[2026-05-01 12:19:07] 2026-05-01 16:18:05,062 | INFO     | chi2: 0.012563709195418061
[2026-05-01 12:19:07] 2026-05-01 16:18:05,062 | INFO     | current chi2=0.012563709195418061 (change=73.7777777010973 %)
[2026-05-01 12:19:07] 2026-05-01 16:18:05,063 | INFO     | sum of square deviations: 181175925092.35815
[2026-05-01 12:19:07] 2026-05-01 16:18:05,082 | INFO     | sum of deviations: 221164878596.76102
[2026-05-01 12:19:07] 2026-05-01 16:18:05,082 | INFO     | mean x (centered): 0.0
[2026-05-01 12:19:07] 2026-05-01 16:18:05,082 | INFO     | mean y: 2529772.5693779904
[2026-05-01 12:19:07] 2026-05-01 16:18:05,082 | INFO     | intersect: 2529772.5693779904
[2026-05-01 12:19:07] 2026-05-01 16:18:05,084 | INFO     | chi2: 0.012180479056453041
[2026-05-01 12:19:07] 2026-05-01 16:18:05,084 | INFO     | current chi2=0.012180479056453041 (change=3.0502945667095087 %)
[2026-05-01 12:19:07] 2026-05-01 16:18:05,084 | INFO     | left removable region: 15
[2026-05-01 12:19:07] 2026-05-01 16:18:05,085 | INFO     | sum of square deviations: 177303053726.56058
[2026-05-01 12:19:07] 2026-05-01 16:18:05,105 | INFO     | sum of deviations: 216089977037.2648
[2026-05-01 12:19:07] 2026-05-01 16:18:05,105 | INFO     | mean x (centered): 0.0
[2026-05-01 12:19:07] 2026-05-01 16:18:05,105 | INFO     | mean y: 2529532.5614457834
[2026-05-01 12:19:07] 2026-05-01 16:18:05,105 | INFO     | intersect: 2529532.5614457834
[2026-05-01 12:19:07] 2026-05-01 16:18:05,107 | INFO     | chi2: 0.012120828967447813
[2026-05-01 12:19:07] 2026-05-01 16:18:05,107 | INFO     | current memory leak: 1.22 B/s (using 830 data points, chi2=0.01)
[2026-05-01 12:19:07] 2026-05-01 16:18:05,108 | INFO     | could have reported an average CPU frequency of 2998 MHz (32 samples)
[2026-05-01 12:19:07] 2026-05-01 16:18:05,108 | INFO     | ..............................
[2026-05-01 12:19:07] 2026-05-01 16:18:05,108 | INFO     | . Timing measurements:
[2026-05-01 12:19:07] 2026-05-01 16:18:05,108 | INFO     | . get job = 0 s
[2026-05-01 12:19:07] 2026-05-01 16:18:05,108 | INFO     | . initial setup = 1 s
[2026-05-01 12:19:07] 2026-05-01 16:18:05,109 | INFO     | . payload setup = 7 s
[2026-05-01 12:19:07] 2026-05-01 16:18:05,109 | INFO     | . stage-in = 0 s
[2026-05-01 12:19:07] 2026-05-01 16:18:05,109 | INFO     | . payload execution = 51906 s
[2026-05-01 12:19:07] 2026-05-01 16:18:05,109 | INFO     | . stage-out = 2 s
[2026-05-01 12:19:07] 2026-05-01 16:18:05,109 | INFO     | . log creation = 0 s
[2026-05-01 12:19:07] 2026-05-01 16:18:05,109 | INFO     | ..............................
[2026-05-01 12:19:07] 2026-05-01 16:18:05,416 | INFO     | 
[2026-05-01 12:19:07] 2026-05-01 16:18:05,416 | INFO     | job summary report
[2026-05-01 12:19:07] 2026-05-01 16:18:05,416 | INFO     | --------------------------------------------------
[2026-05-01 12:19:07] 2026-05-01 16:18:05,416 | INFO     | PanDA job id: 7123013899
[2026-05-01 12:19:07] 2026-05-01 16:18:05,416 | INFO     | task id: 50017221
[2026-05-01 12:19:07] 2026-05-01 16:18:05,417 | INFO     | errors: (none)
[2026-05-01 12:19:07] 2026-05-01 16:18:05,417 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 12:19:07] 2026-05-01 16:18:05,417 | INFO     | pilot state: finished 
[2026-05-01 12:19:07] 2026-05-01 16:18:05,417 | INFO     | transexitcode: 0
[2026-05-01 12:19:07] 2026-05-01 16:18:05,417 | INFO     | exeerrorcode: 0
[2026-05-01 12:19:07] 2026-05-01 16:18:05,417 | INFO     | exeerrordiag: 
[2026-05-01 12:19:07] 2026-05-01 16:18:05,417 | INFO     | exitcode: 0
[2026-05-01 12:19:07] 2026-05-01 16:18:05,418 | INFO     | exitmsg: OK
[2026-05-01 12:19:07] 2026-05-01 16:18:05,418 | INFO     | cpuconsumptiontime: 120921 s
[2026-05-01 12:19:07] 2026-05-01 16:18:05,418 | INFO     | nevents: 400
[2026-05-01 12:19:07] 2026-05-01 16:18:05,418 | INFO     | neventsw: 0
[2026-05-01 12:19:07] 2026-05-01 16:18:05,418 | INFO     | pid: 1095228
[2026-05-01 12:19:07] 2026-05-01 16:18:05,418 | INFO     | pgrp: 1095228
[2026-05-01 12:19:07] 2026-05-01 16:18:05,418 | INFO     | corecount: 8
[2026-05-01 12:19:07] 2026-05-01 16:18:05,419 | INFO     | event service: False
[2026-05-01 12:19:07] 2026-05-01 16:18:05,419 | INFO     | sizes: {0: 2276740, 1: 2278314, 11: 2278342, 51917: 2327230, 51918: 2327229, 51921: 2336557, 51924: 2336741, 51927: 2336935}
[2026-05-01 12:19:07] 2026-05-01 16:18:05,419 | INFO     | --------------------------------------------------
[2026-05-01 12:19:07] 2026-05-01 16:18:05,419 | INFO     | 
[2026-05-01 12:19:07] 2026-05-01 16:18:05,419 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-05-01 12:19:07] 2026-05-01 16:18:05,441 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,441 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,441 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,441 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,442 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,442 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,442 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,442 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,442 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,442 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,442 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,443 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,443 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,443 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,443 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,443 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,443 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,444 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 12:19:07] 2026-05-01 16:18:05,444 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,444 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 12:19:07] 2026-05-01 16:18:05,444 | INFO     | job 7123013899 has completed (purged errors)
[2026-05-01 12:19:07] 2026-05-01 16:18:05,444 | INFO     | overall cleanup function is called
[2026-05-01 12:19:07] 2026-05-01 16:18:06,451 | INFO     | --- collectZombieJob: --- 10, [1095228]
[2026-05-01 12:19:07] 2026-05-01 16:18:06,452 | INFO     | zombie collector waiting for pid 1095228
[2026-05-01 12:19:07] 2026-05-01 16:18:06,452 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 12:19:07] 2026-05-01 16:18:06,452 | INFO     | collected zombie processes
[2026-05-01 12:19:07] 2026-05-01 16:18:06,452 | INFO     | will attempt to kill all subprocesses of pid=1095228
[2026-05-01 12:19:07] 2026-05-01 16:18:06,699 | INFO     | process IDs to be killed: [1095228] (in reverse order)
[2026-05-01 12:19:07] 2026-05-01 16:18:06,777 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 12:19:07] 2026-05-01 16:18:06,777 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 12:19:07] 2026-05-01 16:18:06,789 | INFO     | did not find any defunct processes belonging to 1095228
[2026-05-01 12:19:07] 2026-05-01 16:18:06,800 | INFO     | did not find any defunct processes belonging to 1095228
[2026-05-01 12:19:07] 2026-05-01 16:18:06,801 | INFO     | Ready for new job
[2026-05-01 12:19:07] 2026-05-01 16:18:06,804 | INFO     | ***************************************
[2026-05-01 12:19:07] 2026-05-01 16:18:06,805 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 12:19:07] 2026-05-01 16:18:06,805 | INFO     | ***************************************
[2026-05-01 12:19:07] 2026-05-01 16:18:06,805 | INFO     | 
[2026-05-01 12:19:07] 2026-05-01 16:18:06,807 | INFO     | architecture information:
[2026-05-01 12:19:07] 2026-05-01 16:18:06,807 | INFO     | executing command: cat /etc/os-release
[2026-05-01 12:19:07] 2026-05-01 16:18:06,822 | INFO     | cat /etc/os-release:
[2026-05-01 12:19:07] NAME="CentOS Linux"
[2026-05-01 12:19:07] VERSION="7 (Core)"
[2026-05-01 12:19:07] ID="centos"
[2026-05-01 12:19:07] ID_LIKE="rhel fedora"
[2026-05-01 12:19:07] VERSION_ID="7"
[2026-05-01 12:19:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 12:19:07] ANSI_COLOR="0;31"
[2026-05-01 12:19:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 12:19:07] HOME_URL="https://www.centos.org/"
[2026-05-01 12:19:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 12:19:07] 
[2026-05-01 12:19:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 12:19:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 12:19:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 12:19:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 12:19:07] 
[2026-05-01 12:19:07] 2026-05-01 16:18:06,823 | INFO     | ***************************************
[2026-05-01 12:19:07] 2026-05-01 16:18:07,325 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-05-01 12:19:07] 2026-05-01 16:18:07,340 | INFO     | sufficient remaining disk space (52414119936 B)
[2026-05-01 12:19:07] 2026-05-01 16:18:07,341 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 12:19:07] 2026-05-01 16:18:07,341 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 12:19:07] 2026-05-01 16:18:07,341 | INFO     | update_server=False
[2026-05-01 12:19:07] 2026-05-01 16:18:07,341 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 12:19:07] 2026-05-01 16:18:07,344 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 12:19:07] 2026-05-01 16:18:07,344 | INFO     | aborting loop
[2026-05-01 12:19:07] 2026-05-01 16:18:07,793 | INFO     | all job control threads have been joined
[2026-05-01 12:19:07] 2026-05-01 16:18:07,987 | INFO     | all payload control threads have been joined
[2026-05-01 12:19:07] 2026-05-01 16:18:08,121 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 12:19:07] 2026-05-01 16:18:08,235 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 12:19:07] 2026-05-01 16:18:08,346 | INFO     | [job] retrieve thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:08,349 | INFO     | [job] job monitor thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:08,395 | INFO     | all data control threads have been joined
[2026-05-01 12:19:07] 2026-05-01 16:18:08,439 | INFO     | [data] copytool_in thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:08,472 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:08,630 | INFO     | [payload] failed_post thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:08,798 | INFO     | [job] control thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:08,870 | INFO     | [payload] validate_post thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:08,992 | INFO     | [payload] control thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:09,257 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:09,259 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:09,401 | INFO     | [data] control thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:09,543 | INFO     | [job] validate thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:09,786 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:10,126 | INFO     | [data] copytool_out thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:10,257 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 12:19:07] 2026-05-01 16:18:11,262 | INFO     | [job] queue monitor thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:12,240 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 12:19:07] 2026-05-01 16:18:37,266 | INFO     | PID=1083288 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-01 12:19:07] 2026-05-01 16:18:37,267 | INFO     | .. there are 7 such processes running
[2026-05-01 12:19:07] 2026-05-01 16:18:37,269 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 12:19:07] 2026-05-01 16:18:37,269 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 12:19:07] 2026-05-01 16:18:37,269 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 12:19:07] 2026-05-01 16:19:02,029 | INFO     | [monitor] cgroup control has ended
[2026-05-01 12:19:07] 2026-05-01 16:19:02,298 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140514590406464)>', '<ExcThread(monitor, started 140514150053632)>']
[2026-05-01 12:19:07] 2026-05-01 16:19:02,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 12:19:07] 2026-05-01 16:19:02,391 | INFO     | [monitor] control thread has ended
[2026-05-01 12:19:07] 2026-05-01 16:19:07,323 | INFO     | all workflow threads have been joined
[2026-05-01 12:19:07] 2026-05-01 16:19:07,323 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 12:19:07] 2026-05-01 16:19:07,323 | INFO     | traces error code: 0
[2026-05-01 12:19:07] 2026-05-01 16:19:07,324 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 12:19:07] 2026-05-01 16:19:07,464 [wrapper] ==== pilot stdout END ====
[2026-05-01 12:19:07] 2026-05-01 16:19:07,467 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 12:19:07] 2026-05-01 16:19:07,469 [wrapper] pilotpid: 1083288
[2026-05-01 12:19:07] 2026-05-01 16:19:07,473 [wrapper] Pilot exit status: 0
[2026-05-01 12:19:07] 2026-05-01 16:19:07,482 [wrapper] pandaids: 7123013899 7123013899
[2026-05-01 12:19:07] 2026-05-01 16:19:07,538 [wrapper] cleanup supervisor_pilot 2382557 1083289
[2026-05-01 12:19:07] 2026-05-01 16:19:07,542 [wrapper] Test setup, not cleaning
[2026-05-01 12:19:07] 2026-05-01 16:19:07,545 [wrapper] apfmon messages muted
[2026-05-01 12:19:07] 2026-05-01 16:19:07,548 [wrapper] ==== wrapper stdout END ====
[2026-05-01 12:19:07] 2026-05-01 16:19:07,551 [wrapper] ==== wrapper stderr END ====
[2026-05-01 12:19:07]  *** Error codes and diagnostics ***
[2026-05-01 12:19:07]     "exeErrorCode": 0,
[2026-05-01 12:19:07]     "pilotErrorCode": 0,
[2026-05-01 12:19:07]  *** Listing of results directory ***
[2026-05-01 12:19:07] total 801796
[2026-05-01 12:19:07] drwx------. 5 boincer umatlas      4096 Apr 22 05:13 pilot3
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas      5631 Apr 30 19:29 queuedata.json
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas    683926 Apr 30 19:29 pilot3.tar.gz
[2026-05-01 12:19:07] -rwx------. 1 boincer umatlas     36322 Apr 30 19:29 runpilot2-wrapper.sh
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas       100 Apr 30 21:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 12:19:07] -rwxr-xr-x. 1 boincer umatlas      7986 Apr 30 21:39 run_atlas
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas       105 Apr 30 21:39 job.xml
[2026-05-01 12:19:07] -rw-r--r--. 3 boincer umatlas 313435956 Apr 30 21:39 EVNT.50017216._000014.pool.root.1
[2026-05-01 12:19:07] -rw-r--r--. 3 boincer umatlas 313435956 Apr 30 21:39 ATLAS.root_0
[2026-05-01 12:19:07] -rw-r--r--. 2 boincer umatlas     15667 Apr 30 21:39 start_atlas.sh
[2026-05-01 12:19:07] drwxrwx--x. 2 boincer umatlas      4096 Apr 30 21:39 shared
[2026-05-01 12:19:07] -rw-r--r--. 2 boincer umatlas    697400 Apr 30 21:39 input.tar.gz
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas         0 Apr 30 21:39 boinc_lockfile
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas      2529 Apr 30 21:52 pandaJob.out
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas        57 Apr 30 21:52 setup.sh.local
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas   1001806 Apr 30 21:52 agis_schedconf.cvmfs.json
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas       442 Apr 30 21:52 workernode_map.json
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas 179823346 May  1 12:17 HITS.50017221._000342.pool.root.1
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas       489 May  1 12:17 boinc_task_state.xml
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas      1042 May  1 12:17 memory_monitor_summary.json
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas   1508687 May  1 12:17 agis_ddmendpoints.agis.ALL.json
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas    730183 May  1 12:17 log.50017221._000342.job.log.tgz.1
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas      6399 May  1 12:18 heartbeat_new.json
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas      6290 May  1 12:18 heartbeat.json
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas      6440 May  1 12:18 init_data.xml
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas        96 May  1 12:18 pilot_heartbeat.json
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas      8192 May  1 12:18 boinc_mmap_file
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas        28 May  1 12:18 wrapper_checkpoint.txt
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas      4822 May  1 12:19 pilotlog.txt
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas   4367839 May  1 12:19 log.50017221._000342.job.log.1
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas       357 May  1 12:19 output.list
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas       410 May  1 12:19 runtime_log
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas   5120000 May  1 12:19 result.tar.gz
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas      9050 May  1 12:19 runtime_log.err
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas       784 May  1 12:19 e5c579ac1a84.diag
[2026-05-01 12:19:07] -rw-r--r--. 1 boincer umatlas     23341 May  1 12:19 stderr.txt
[2026-05-01 12:19:07] HITS file was successfully produced:
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas 179823346 May  1 12:17 shared/HITS.pool.root.1
[2026-05-01 12:19:07]  *** Contents of shared directory: ***
[2026-05-01 12:19:07] total 487408
[2026-05-01 12:19:07] -rw-r--r--. 3 boincer umatlas 313435956 Apr 30 21:39 ATLAS.root_0
[2026-05-01 12:19:07] -rw-r--r--. 2 boincer umatlas     15667 Apr 30 21:39 start_atlas.sh
[2026-05-01 12:19:07] -rw-r--r--. 2 boincer umatlas    697400 Apr 30 21:39 input.tar.gz
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas 179823346 May  1 12:17 HITS.pool.root.1
[2026-05-01 12:19:07] -rw-------. 1 boincer umatlas   5120000 May  1 12:19 result.tar.gz
12:19:08 (1064553): run_atlas exited; CPU time 122842.367387
12:19:08 (1064553): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN