Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:09:41 (2348949): wrapper (7.7.26015): starting
02:09:41 (2348949): wrapper: running run_atlas (--nthreads 4)
[2026-05-04 02:09:41] Arguments: --nthreads 4
[2026-05-04 02:09:41] Threads: 4
[2026-05-04 02:09:41] Checking for CVMFS
[2026-05-04 02:09:41] No cvmfs_config command found, will try listing directly
[2026-05-04 02:09:41] CVMFS is ok
[2026-05-04 02:09:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-04 02:09:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-04 02:09:41] Further information can be found at the LHC@home message board.
[2026-05-04 02:09:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-04 02:09:41] Checking for apptainer binary...
[2026-05-04 02:09:41] which: no apptainer in ((null))
[2026-05-04 02:09:41] apptainer is not installed, using version from CVMFS
[2026-05-04 02:09:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-04 02:09:42] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot84/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-05-04 02:09:42] apptainer works
[2026-05-04 02:09:42] Set ATHENA_PROC_NUMBER=4
[2026-05-04 02:09:42] Set ATHENA_CORE_NUMBER=4
[2026-05-04 02:09:42] Starting ATLAS job with PandaID=7122981489
[2026-05-04 02:09:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot84/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:12:52 (2979782): wrapper (7.7.26015): starting
05:12:52 (2979782): wrapper: running run_atlas (--nthreads 4)
[2026-05-04 05:12:52] Arguments: --nthreads 4
[2026-05-04 05:12:52] Threads: 4
[2026-05-04 05:12:52] This job has been restarted, cleaning up previous attempt
[2026-05-04 05:12:52] Checking for CVMFS
[2026-05-04 05:12:52] No cvmfs_config command found, will try listing directly
[2026-05-04 05:12:52] CVMFS is ok
[2026-05-04 05:12:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-04 05:12:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-04 05:12:52] Further information can be found at the LHC@home message board.
[2026-05-04 05:12:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-04 05:12:52] Checking for apptainer binary...
[2026-05-04 05:12:52] which: no apptainer in ((null))
[2026-05-04 05:12:52] apptainer is not installed, using version from CVMFS
[2026-05-04 05:12:52] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-04 05:12:52] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot84/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-05-04 05:12:52] apptainer works
[2026-05-04 05:12:52] Set ATHENA_PROC_NUMBER=4
[2026-05-04 05:12:52] Set ATHENA_CORE_NUMBER=4
[2026-05-04 05:12:52] Starting ATLAS job with PandaID=7122981489
[2026-05-04 05:12:52] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot84/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-04 09:01:39]  *** The last 200 lines of the pilot log: ***
[2026-05-04 09:01:39] 2026-05-04 07:00:38,896 | INFO     | total number of processed events: 400 (read)
[2026-05-04 09:01:39] 2026-05-04 07:00:38,925 | INFO     | using path: /var/lib/boinc/var/slot84/slots/0/PanDA_Pilot-7122981489/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 09:01:39] 2026-05-04 07:00:38,925 | INFO     | extracted standard info from prmon json
[2026-05-04 09:01:39] 2026-05-04 07:00:38,926 | INFO     | extracted standard memory fields from prmon json
[2026-05-04 09:01:39] 2026-05-04 07:00:38,926 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-04 09:01:39] 2026-05-04 07:00:38,926 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-04 09:01:39] 2026-05-04 07:00:38,931 | INFO     | fitting pss+swap vs Time
[2026-05-04 09:01:39] 2026-05-04 07:00:38,931 | INFO     | sum of square deviations: 3485088600.0
[2026-05-04 09:01:39] 2026-05-04 07:00:38,933 | INFO     | sum of deviations: 26942935182.0
[2026-05-04 09:01:39] 2026-05-04 07:00:38,933 | INFO     | mean x (centered): 0.0
[2026-05-04 09:01:39] 2026-05-04 07:00:38,933 | INFO     | mean y: 2308981.125
[2026-05-04 09:01:39] 2026-05-04 07:00:38,933 | INFO     | intersect: 2308981.125
[2026-05-04 09:01:39] 2026-05-04 07:00:38,934 | INFO     | chi2: 2.2347598145832333
[2026-05-04 09:01:39] 2026-05-04 07:00:38,934 | INFO     | sum of square deviations: 3256879670.0
[2026-05-04 09:01:39] 2026-05-04 07:00:38,935 | INFO     | sum of deviations: 40352437081.99999
[2026-05-04 09:01:39] 2026-05-04 07:00:38,936 | INFO     | mean x (centered): 0.0
[2026-05-04 09:01:39] 2026-05-04 07:00:38,936 | INFO     | mean y: 2317769.109589041
[2026-05-04 09:01:39] 2026-05-04 07:00:38,936 | INFO     | intersect: 2317769.109589041
[2026-05-04 09:01:39] 2026-05-04 07:00:38,936 | INFO     | chi2: 1.41351396930138
[2026-05-04 09:01:39] 2026-05-04 07:00:38,936 | INFO     | current chi2=1.41351396930138 (change=36.74872977054179 %)
[2026-05-04 09:01:39] 2026-05-04 07:00:38,937 | INFO     | sum of square deviations: 3038856977.5
[2026-05-04 09:01:39] 2026-05-04 07:00:38,938 | INFO     | sum of deviations: 39217452598.99999
[2026-05-04 09:01:39] 2026-05-04 07:00:38,938 | INFO     | mean x (centered): 0.0
[2026-05-04 09:01:39] 2026-05-04 07:00:38,938 | INFO     | mean y: 2316975.1028037383
[2026-05-04 09:01:39] 2026-05-04 07:00:38,938 | INFO     | intersect: 2316975.1028037383
[2026-05-04 09:01:39] 2026-05-04 07:00:38,939 | INFO     | chi2: 1.413813815286117
[2026-05-04 09:01:39] 2026-05-04 07:00:38,939 | INFO     | current chi2=1.413813815286117 (change=-0.021212806611679708 %)
[2026-05-04 09:01:39] 2026-05-04 07:00:38,939 | INFO     | right removable region: 213
[2026-05-04 09:01:39] 2026-05-04 07:00:38,939 | INFO     | sum of square deviations: 3256879670.0
[2026-05-04 09:01:39] 2026-05-04 07:00:38,941 | INFO     | sum of deviations: -4260239572.999998
[2026-05-04 09:01:39] 2026-05-04 07:00:38,941 | INFO     | mean x (centered): 0.0
[2026-05-04 09:01:39] 2026-05-04 07:00:38,941 | INFO     | mean y: 2329618.735159817
[2026-05-04 09:01:39] 2026-05-04 07:00:38,941 | INFO     | intersect: 2329618.735159817
[2026-05-04 09:01:39] 2026-05-04 07:00:38,941 | INFO     | chi2: 0.8475846104973725
[2026-05-04 09:01:39] 2026-05-04 07:00:38,942 | INFO     | current chi2=0.8475846104973725 (change=62.07267532885 %)
[2026-05-04 09:01:39] 2026-05-04 07:00:38,942 | INFO     | sum of square deviations: 3038856977.5
[2026-05-04 09:01:39] 2026-05-04 07:00:38,943 | INFO     | sum of deviations: -6409455745.000001
[2026-05-04 09:01:39] 2026-05-04 07:00:38,944 | INFO     | mean x (centered): 0.0
[2026-05-04 09:01:39] 2026-05-04 07:00:38,944 | INFO     | mean y: 2331106.953271028
[2026-05-04 09:01:39] 2026-05-04 07:00:38,944 | INFO     | intersect: 2331106.953271028
[2026-05-04 09:01:39] 2026-05-04 07:00:38,944 | INFO     | chi2: 0.8410839934107632
[2026-05-04 09:01:39] 2026-05-04 07:00:38,944 | INFO     | current chi2=0.8410839934107632 (change=0.7669578949521841 %)
[2026-05-04 09:01:39] 2026-05-04 07:00:38,944 | INFO     | left removable region: 10
[2026-05-04 09:01:39] 2026-05-04 07:00:38,945 | INFO     | sum of square deviations: 2593916542.0
[2026-05-04 09:01:39] 2026-05-04 07:00:38,946 | INFO     | sum of deviations: 6718031137.999999
[2026-05-04 09:01:39] 2026-05-04 07:00:38,946 | INFO     | mean x (centered): 0.0
[2026-05-04 09:01:39] 2026-05-04 07:00:38,946 | INFO     | mean y: 2340522.433497537
[2026-05-04 09:01:39] 2026-05-04 07:00:38,946 | INFO     | intersect: 2340522.433497537
[2026-05-04 09:01:39] 2026-05-04 07:00:38,947 | INFO     | chi2: 0.001419578771130418
[2026-05-04 09:01:39] 2026-05-04 07:00:38,947 | INFO     | current memory leak: 2.59 B/s (using 203 data points, chi2=0.00)
[2026-05-04 09:01:39] 2026-05-04 07:00:38,947 | INFO     | could have reported an average CPU frequency of 2657 MHz (11 samples)
[2026-05-04 09:01:39] 2026-05-04 07:00:38,948 | INFO     | ..............................
[2026-05-04 09:01:39] 2026-05-04 07:00:38,948 | INFO     | . Timing measurements:
[2026-05-04 09:01:39] 2026-05-04 07:00:38,948 | INFO     | . get job = 0 s
[2026-05-04 09:01:39] 2026-05-04 07:00:38,948 | INFO     | . initial setup = 1 s
[2026-05-04 09:01:39] 2026-05-04 07:00:38,948 | INFO     | . payload setup = 15 s
[2026-05-04 09:01:39] 2026-05-04 07:00:38,948 | INFO     | . stage-in = 0 s
[2026-05-04 09:01:39] 2026-05-04 07:00:38,948 | INFO     | . payload execution = 13617 s
[2026-05-04 09:01:39] 2026-05-04 07:00:38,948 | INFO     | . stage-out = 1 s
[2026-05-04 09:01:39] 2026-05-04 07:00:38,948 | INFO     | . log creation = 0 s
[2026-05-04 09:01:39] 2026-05-04 07:00:38,948 | INFO     | ..............................
[2026-05-04 09:01:39] 2026-05-04 07:00:39,043 | INFO     | 
[2026-05-04 09:01:39] 2026-05-04 07:00:39,044 | INFO     | job summary report
[2026-05-04 09:01:39] 2026-05-04 07:00:39,044 | INFO     | --------------------------------------------------
[2026-05-04 09:01:39] 2026-05-04 07:00:39,044 | INFO     | PanDA job id: 7122981489
[2026-05-04 09:01:39] 2026-05-04 07:00:39,044 | INFO     | task id: 50017163
[2026-05-04 09:01:39] 2026-05-04 07:00:39,044 | INFO     | errors: (none)
[2026-05-04 09:01:39] 2026-05-04 07:00:39,044 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-04 09:01:39] 2026-05-04 07:00:39,044 | INFO     | pilot state: finished 
[2026-05-04 09:01:39] 2026-05-04 07:00:39,044 | INFO     | transexitcode: 0
[2026-05-04 09:01:39] 2026-05-04 07:00:39,044 | INFO     | exeerrorcode: 0
[2026-05-04 09:01:39] 2026-05-04 07:00:39,044 | INFO     | exeerrordiag: 
[2026-05-04 09:01:39] 2026-05-04 07:00:39,044 | INFO     | exitcode: 0
[2026-05-04 09:01:39] 2026-05-04 07:00:39,045 | INFO     | exitmsg: OK
[2026-05-04 09:01:39] 2026-05-04 07:00:39,045 | INFO     | cpuconsumptiontime: 51003 s
[2026-05-04 09:01:39] 2026-05-04 07:00:39,045 | INFO     | nevents: 400
[2026-05-04 09:01:39] 2026-05-04 07:00:39,045 | INFO     | neventsw: 0
[2026-05-04 09:01:39] 2026-05-04 07:00:39,045 | INFO     | pid: 3010517
[2026-05-04 09:01:39] 2026-05-04 07:00:39,045 | INFO     | pgrp: 3010517
[2026-05-04 09:01:39] 2026-05-04 07:00:39,045 | INFO     | corecount: 4
[2026-05-04 09:01:39] 2026-05-04 07:00:39,045 | INFO     | event service: False
[2026-05-04 09:01:39] 2026-05-04 07:00:39,045 | INFO     | sizes: {0: 2275193, 1: 2277078, 12: 2277078, 13635: 2308120, 13636: 2317140, 13637: 2317518}
[2026-05-04 09:01:39] 2026-05-04 07:00:39,045 | INFO     | --------------------------------------------------
[2026-05-04 09:01:39] 2026-05-04 07:00:39,045 | INFO     | 
[2026-05-04 09:01:39] 2026-05-04 07:00:39,045 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot84/slots/0
[2026-05-04 09:01:39] 2026-05-04 07:00:39,085 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,085 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,085 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,085 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,085 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,085 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,086 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,086 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,086 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,086 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,086 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,086 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,086 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,086 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,086 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,086 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,086 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,087 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-04 09:01:39] 2026-05-04 07:00:39,087 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,087 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-04 09:01:39] 2026-05-04 07:00:39,087 | INFO     | job 7122981489 has completed (purged errors)
[2026-05-04 09:01:39] 2026-05-04 07:00:39,087 | INFO     | overall cleanup function is called
[2026-05-04 09:01:39] 2026-05-04 07:00:40,095 | INFO     | --- collectZombieJob: --- 10, [3010517]
[2026-05-04 09:01:39] 2026-05-04 07:00:40,096 | INFO     | zombie collector waiting for pid 3010517
[2026-05-04 09:01:39] 2026-05-04 07:00:40,096 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-04 09:01:39] 2026-05-04 07:00:40,096 | INFO     | collected zombie processes
[2026-05-04 09:01:39] 2026-05-04 07:00:40,096 | INFO     | will attempt to kill all subprocesses of pid=3010517
[2026-05-04 09:01:39] 2026-05-04 07:00:40,816 | INFO     | process IDs to be killed: [3010517] (in reverse order)
[2026-05-04 09:01:39] 2026-05-04 07:00:41,181 | WARNING  | found no corresponding commands to process id(s)
[2026-05-04 09:01:39] 2026-05-04 07:00:41,182 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-04 09:01:39] 2026-05-04 07:00:41,292 | INFO     | did not find any defunct processes belonging to 3010517
[2026-05-04 09:01:39] 2026-05-04 07:00:41,387 | INFO     | did not find any defunct processes belonging to 3010517
[2026-05-04 09:01:39] 2026-05-04 07:00:41,388 | INFO     | Ready for new job
[2026-05-04 09:01:39] 2026-05-04 07:00:41,390 | INFO     | ***************************************
[2026-05-04 09:01:39] 2026-05-04 07:00:41,390 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-04 09:01:39] 2026-05-04 07:00:41,390 | INFO     | ***************************************
[2026-05-04 09:01:39] 2026-05-04 07:00:41,391 | INFO     | 
[2026-05-04 09:01:39] 2026-05-04 07:00:41,407 | INFO     | architecture information:
[2026-05-04 09:01:39] 2026-05-04 07:00:41,407 | INFO     | executing command: cat /etc/os-release
[2026-05-04 09:01:39] 2026-05-04 07:00:41,433 | INFO     | cat /etc/os-release:
[2026-05-04 09:01:39] NAME="CentOS Linux"
[2026-05-04 09:01:39] VERSION="7 (Core)"
[2026-05-04 09:01:39] ID="centos"
[2026-05-04 09:01:39] ID_LIKE="rhel fedora"
[2026-05-04 09:01:39] VERSION_ID="7"
[2026-05-04 09:01:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-04 09:01:39] ANSI_COLOR="0;31"
[2026-05-04 09:01:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-04 09:01:39] HOME_URL="https://www.centos.org/"
[2026-05-04 09:01:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-04 09:01:39] 
[2026-05-04 09:01:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-04 09:01:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-04 09:01:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-04 09:01:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-04 09:01:39] 
[2026-05-04 09:01:39] 2026-05-04 07:00:41,433 | INFO     | ***************************************
[2026-05-04 09:01:39] 2026-05-04 07:00:41,939 | INFO     | executing command: df -mP /var/lib/boinc/var/slot84/slots/0
[2026-05-04 09:01:39] 2026-05-04 07:00:41,967 | INFO     | sufficient remaining disk space (241718788096 B)
[2026-05-04 09:01:39] 2026-05-04 07:00:41,967 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-04 09:01:39] 2026-05-04 07:00:41,967 | INFO     | current server update state: UPDATING_FINAL
[2026-05-04 09:01:39] 2026-05-04 07:00:41,968 | INFO     | update_server=False
[2026-05-04 09:01:39] 2026-05-04 07:00:41,968 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-04 09:01:39] 2026-05-04 07:00:41,968 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-04 09:01:39] 2026-05-04 07:00:41,973 | WARNING  | process 3010517 can no longer be monitored (due to stat problems) - aborting
[2026-05-04 09:01:39] 2026-05-04 07:00:42,057 | INFO     | all data control threads have been joined
[2026-05-04 09:01:39] 2026-05-04 07:00:42,565 | INFO     | using path: /var/lib/boinc/var/slot84/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 09:01:39] 2026-05-04 07:00:42,688 | INFO     | all payload control threads have been joined
[2026-05-04 09:01:39] 2026-05-04 07:00:42,971 | INFO     | all job control threads have been joined
[2026-05-04 09:01:39] 2026-05-04 07:00:42,973 | INFO     | [job] retrieve thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:43,063 | INFO     | [data] control thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:43,099 | INFO     | [payload] failed_post thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:43,158 | INFO     | [payload] validate_post thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:43,264 | INFO     | number of running child processes to parent process 3010517: 1
[2026-05-04 09:01:39] 2026-05-04 07:00:43,264 | INFO     | maximum number of monitored processes: 6
[2026-05-04 09:01:39] 2026-05-04 07:00:43,264 | INFO     | aborting job monitoring since job object (job id=7122981489) has expired
[2026-05-04 09:01:39] 2026-05-04 07:00:43,264 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-04 09:01:39] 2026-05-04 07:00:43,264 | INFO     | will abort loop
[2026-05-04 09:01:39] 2026-05-04 07:00:43,406 | INFO     | [job] create_data_payload thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:43,429 | INFO     | [payload] validate_pre thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:43,596 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:43,609 | INFO     | [data] copytool_in thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:43,689 | INFO     | [job] validate thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:43,693 | INFO     | [payload] control thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:43,973 | INFO     | [data] copytool_out thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:43,977 | INFO     | [job] control thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:44,054 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-04 09:01:39] 2026-05-04 07:00:44,269 | INFO     | [job] job monitor thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:44,295 | INFO     | [payload] execute_payloads thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:44,892 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-04 09:01:39] 2026-05-04 07:00:45,059 | INFO     | [job] queue monitor thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:00:48,898 | INFO     | [data] queue_monitor thread has finished
[2026-05-04 09:01:39] 2026-05-04 07:01:12,800 | INFO     | PID=2997342 has CPU usage=12.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-05-04 09:01:39] 2026-05-04 07:01:12,800 | INFO     | .. there are 27 such processes running
[2026-05-04 09:01:39] 2026-05-04 07:01:12,802 | INFO     | found 0 job(s) in 20 queues
[2026-05-04 09:01:39] 2026-05-04 07:01:12,802 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-04 09:01:39] 2026-05-04 07:01:12,802 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-04 09:01:39] 2026-05-04 07:01:32,513 | INFO     | [monitor] cgroup control has ended
[2026-05-04 09:01:39] 2026-05-04 07:01:34,331 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22697817876288)>', '<ExcThread(monitor, started 22697580177152)>']
[2026-05-04 09:01:39] 2026-05-04 07:01:34,909 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-04 09:01:39] 2026-05-04 07:01:34,910 | INFO     | [monitor] control thread has ended
[2026-05-04 09:01:39] 2026-05-04 07:01:39,356 | INFO     | all workflow threads have been joined
[2026-05-04 09:01:39] 2026-05-04 07:01:39,357 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-04 09:01:39] 2026-05-04 07:01:39,357 | INFO     | traces error code: 0
[2026-05-04 09:01:39] 2026-05-04 07:01:39,357 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-04 09:01:39] 2026-05-04 07:01:39,498 [wrapper] ==== pilot stdout END ====
[2026-05-04 09:01:39] 2026-05-04 07:01:39,505 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-04 09:01:39] 2026-05-04 07:01:39,509 [wrapper] pilotpid: 2997342
[2026-05-04 09:01:39] 2026-05-04 07:01:39,514 [wrapper] Pilot exit status: 0
[2026-05-04 09:01:39] 2026-05-04 07:01:39,531 [wrapper] pandaids: 7122981489 7122981489
[2026-05-04 09:01:39] 2026-05-04 07:01:39,727 [wrapper] cleanup supervisor_pilot 3572340 2997343
[2026-05-04 09:01:39] 2026-05-04 07:01:39,732 [wrapper] Test setup, not cleaning
[2026-05-04 09:01:39] 2026-05-04 07:01:39,736 [wrapper] apfmon messages muted
[2026-05-04 09:01:39] 2026-05-04 07:01:39,742 [wrapper] ==== wrapper stdout END ====
[2026-05-04 09:01:39] 2026-05-04 07:01:39,745 [wrapper] ==== wrapper stderr END ====
[2026-05-04 09:01:39]  *** Error codes and diagnostics ***
[2026-05-04 09:01:39]     "exeErrorCode": 0,
[2026-05-04 09:01:39]     "pilotErrorCode": 0,
[2026-05-04 09:01:39]  *** Listing of results directory ***
[2026-05-04 09:01:39] total 812824
[2026-05-04 09:01:39] drwx------. 5 boinc boinc      4096 Apr 22 11:13 pilot3
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc    683926 Apr 30 23:11 pilot3.tar.gz
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc      5631 Apr 30 23:40 queuedata.json
[2026-05-04 09:01:39] -rwx------. 1 boinc boinc     36322 Apr 30 23:41 runpilot2-wrapper.sh
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc       100 May  4 02:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-04 09:01:39] -rwxr-xr-x. 1 boinc boinc      7986 May  4 02:09 run_atlas
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc       105 May  4 02:09 job.xml
[2026-05-04 09:01:39] -rw-r--r--. 3 boinc boinc 321356232 May  4 02:09 EVNT.50017157._000018.pool.root.1
[2026-05-04 09:01:39] -rw-r--r--. 3 boinc boinc 321356232 May  4 02:09 ATLAS.root_0
[2026-05-04 09:01:39] -rw-r--r--. 2 boinc boinc     15667 May  4 02:09 start_atlas.sh
[2026-05-04 09:01:39] drwxrwx--x. 2 boinc boinc      4096 May  4 02:09 shared
[2026-05-04 09:01:39] -rw-r--r--. 2 boinc boinc    697402 May  4 02:09 input.tar.gz
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc         0 May  4 02:09 boinc_lockfile
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc      2529 May  4 05:12 pandaJob.out
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc   1003025 May  4 05:13 agis_schedconf.cvmfs.json
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc       443 May  4 05:13 workernode_map.json
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc      6549 May  4 08:11 init_data.xml
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc 182294264 May  4 09:00 HITS.50017163._000435.pool.root.1
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc       489 May  4 09:00 boinc_task_state.xml
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc      1030 May  4 09:00 memory_monitor_summary.json
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc   1508687 May  4 09:00 agis_ddmendpoints.agis.ALL.json
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc    330649 May  4 09:00 log.50017163._000435.job.log.tgz.1
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc      6369 May  4 09:00 heartbeat_new.json
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc      6260 May  4 09:00 heartbeat.json
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc        96 May  4 09:01 pilot_heartbeat.json
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc      5366 May  4 09:01 pilotlog.txt
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc      8192 May  4 09:01 boinc_mmap_file
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc        28 May  4 09:01 wrapper_checkpoint.txt
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc   1257162 May  4 09:01 log.50017163._000435.job.log.1
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc       357 May  4 09:01 output.list
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc       410 May  4 09:01 runtime_log
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc   1607680 May  4 09:01 result.tar.gz
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc      8905 May  4 09:01 runtime_log.err
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc       791 May  4 09:01 cc7de1c3eda7.diag
[2026-05-04 09:01:39] -rw-r--r--. 1 boinc boinc     22727 May  4 09:01 stderr.txt
[2026-05-04 09:01:39] HITS file was successfully produced:
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc 182294264 May  4 09:00 shared/HITS.pool.root.1
[2026-05-04 09:01:39]  *** Contents of shared directory: ***
[2026-05-04 09:01:39] total 494132
[2026-05-04 09:01:39] -rw-r--r--. 3 boinc boinc 321356232 May  4 02:09 ATLAS.root_0
[2026-05-04 09:01:39] -rw-r--r--. 2 boinc boinc     15667 May  4 02:09 start_atlas.sh
[2026-05-04 09:01:39] -rw-r--r--. 2 boinc boinc    697402 May  4 02:09 input.tar.gz
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc 182294264 May  4 09:00 HITS.pool.root.1
[2026-05-04 09:01:39] -rw-------. 1 boinc boinc   1607680 May  4 09:01 result.tar.gz
09:01:41 (2979782): run_atlas exited; CPU time 51759.525533
09:01:41 (2979782): called boinc_finish(0)

</stderr_txt>
]]>

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