Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:08:09 (5590): wrapper (7.7.26015): starting
07:08:09 (5590): wrapper: running run_atlas (--nthreads 8)
[2026-05-01 07:08:09] Arguments: --nthreads 8
[2026-05-01 07:08:09] Threads: 8
[2026-05-01 07:08:09] Checking for CVMFS
[2026-05-01 07:08:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-01 07:08:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-01 07:08:14] Running cvmfs_config stat atlas.cern.ch
[2026-05-01 07:08:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-01 07:08:15] 2.11.2.0 2888 22324 100700 159078 0 53 13472669 25165824 96 130560 0 71696571 99.982 9384780 6137 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-01 07:08:15] CVMFS is ok
[2026-05-01 07:08:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 07:08:15] Checking for apptainer binary...
[2026-05-01 07:08:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-01 07:08:15] Running /usr/bin/apptainer --version
[2026-05-01 07:08:15] apptainer version 1.3.2-1.el7
[2026-05-01 07:08:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 07:08:29] cg-vwn421.simple-grid.lan
[2026-05-01 07:08:29] apptainer works
[2026-05-01 07:08:29] Set ATHENA_PROC_NUMBER=8
[2026-05-01 07:08:29] Set ATHENA_CORE_NUMBER=8
[2026-05-01 07:08:29] Starting ATLAS job with PandaID=7122774055
[2026-05-01 07:08:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/24 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 13:19:29]  *** The last 200 lines of the pilot log: ***
[2026-05-01 13:19:29] 2026-05-01 11:18:15,713 | INFO     | job 7122774055 has finished - writing final server update
[2026-05-01 13:19:29] 2026-05-01 11:18:15,713 | INFO     | total number of processed events: 400 (read)
[2026-05-01 13:19:29] 2026-05-01 11:18:15,716 | INFO     | using path: /var/lib/boinc/slots/24/PanDA_Pilot-7122774055/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 13:19:29] 2026-05-01 11:18:15,716 | INFO     | extracted standard info from prmon json
[2026-05-01 13:19:29] 2026-05-01 11:18:15,717 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 13:19:29] 2026-05-01 11:18:15,717 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 13:19:29] 2026-05-01 11:18:15,717 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 13:19:29] 2026-05-01 11:18:15,725 | INFO     | fitting pss+swap vs Time
[2026-05-01 13:19:29] 2026-05-01 11:18:15,726 | INFO     | sum of square deviations: 13639518992.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,739 | INFO     | sum of deviations: 152604788606.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,739 | INFO     | mean x (centered): 0.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,739 | INFO     | mean y: 2460427.192634561
[2026-05-01 13:19:29] 2026-05-01 11:18:15,740 | INFO     | intersect: 2460427.192634561
[2026-05-01 13:19:29] 2026-05-01 11:18:15,740 | INFO     | chi2: 10.363994317922833
[2026-05-01 13:19:29] 2026-05-01 11:18:15,741 | INFO     | sum of square deviations: 13068103627.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,745 | INFO     | sum of deviations: 199120504068.50003
[2026-05-01 13:19:29] 2026-05-01 11:18:15,745 | INFO     | mean x (centered): 0.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,745 | INFO     | mean y: 2472730.370689655
[2026-05-01 13:19:29] 2026-05-01 11:18:15,746 | INFO     | intersect: 2472730.370689655
[2026-05-01 13:19:29] 2026-05-01 11:18:15,746 | INFO     | chi2: 8.819273052818133
[2026-05-01 13:19:29] 2026-05-01 11:18:15,746 | INFO     | current chi2=8.819273052818133 (change=14.904690389817729 %)
[2026-05-01 13:19:29] 2026-05-01 11:18:15,746 | INFO     | right removable region: 347
[2026-05-01 13:19:29] 2026-05-01 11:18:15,747 | INFO     | sum of square deviations: 13068103627.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,751 | INFO     | sum of deviations: 22164046433.50001
[2026-05-01 13:19:29] 2026-05-01 11:18:15,751 | INFO     | mean x (centered): 0.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,752 | INFO     | mean y: 2495236.8017241377
[2026-05-01 13:19:29] 2026-05-01 11:18:15,752 | INFO     | intersect: 2495236.8017241377
[2026-05-01 13:19:29] 2026-05-01 11:18:15,752 | INFO     | chi2: 4.984826831646266
[2026-05-01 13:19:29] 2026-05-01 11:18:15,752 | INFO     | current chi2=4.984826831646266 (change=51.902454992417134 %)
[2026-05-01 13:19:29] 2026-05-01 11:18:15,753 | INFO     | sum of square deviations: 12512874612.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,757 | INFO     | sum of deviations: -76141544928.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,757 | INFO     | mean x (centered): 0.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,758 | INFO     | mean y: 2522212.6559766764
[2026-05-01 13:19:29] 2026-05-01 11:18:15,758 | INFO     | intersect: 2522212.6559766764
[2026-05-01 13:19:29] 2026-05-01 11:18:15,758 | INFO     | chi2: 2.0830698712499247
[2026-05-01 13:19:29] 2026-05-01 11:18:15,759 | INFO     | current chi2=2.0830698712499247 (change=58.21179066792216 %)
[2026-05-01 13:19:29] 2026-05-01 11:18:15,759 | INFO     | sum of square deviations: 11973599384.5
[2026-05-01 13:19:29] 2026-05-01 11:18:15,763 | INFO     | sum of deviations: -95204980728.99997
[2026-05-01 13:19:29] 2026-05-01 11:18:15,763 | INFO     | mean x (centered): 0.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,763 | INFO     | mean y: 2527572.74556213
[2026-05-01 13:19:29] 2026-05-01 11:18:15,764 | INFO     | intersect: 2527572.74556213
[2026-05-01 13:19:29] 2026-05-01 11:18:15,764 | INFO     | chi2: 1.8997609862647749
[2026-05-01 13:19:29] 2026-05-01 11:18:15,764 | INFO     | current chi2=1.8997609862647749 (change=8.799939335455765 %)
[2026-05-01 13:19:29] 2026-05-01 11:18:15,764 | INFO     | left removable region: 15
[2026-05-01 13:19:29] 2026-05-01 11:18:15,765 | INFO     | sum of square deviations: 11347200663.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,784 | INFO     | sum of deviations: -47102582249.5
[2026-05-01 13:19:29] 2026-05-01 11:18:15,784 | INFO     | mean x (centered): 0.0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,785 | INFO     | mean y: 2541463.358433735
[2026-05-01 13:19:29] 2026-05-01 11:18:15,785 | INFO     | intersect: 2541463.358433735
[2026-05-01 13:19:29] 2026-05-01 11:18:15,785 | INFO     | chi2: 0.20174505256086991
[2026-05-01 13:19:29] 2026-05-01 11:18:15,786 | INFO     | current memory leak: -4.15 B/s (using 332 data points, chi2=0.20)
[2026-05-01 13:19:29] 2026-05-01 11:18:15,786 | INFO     | could have reported an average CPU frequency of 1999 MHz (16 samples)
[2026-05-01 13:19:29] 2026-05-01 11:18:15,787 | INFO     | ..............................
[2026-05-01 13:19:29] 2026-05-01 11:18:15,787 | INFO     | . Timing measurements:
[2026-05-01 13:19:29] 2026-05-01 11:18:15,787 | INFO     | . get job = 0 s
[2026-05-01 13:19:29] 2026-05-01 11:18:15,787 | INFO     | . initial setup = 119 s
[2026-05-01 13:19:29] 2026-05-01 11:18:15,787 | INFO     | . payload setup = 181 s
[2026-05-01 13:19:29] 2026-05-01 11:18:15,787 | INFO     | . stage-in = 0 s
[2026-05-01 13:19:29] 2026-05-01 11:18:15,787 | INFO     | . payload execution = 21608 s
[2026-05-01 13:19:29] 2026-05-01 11:18:15,787 | INFO     | . stage-out = 4 s
[2026-05-01 13:19:29] 2026-05-01 11:18:15,787 | INFO     | . log creation = 1 s
[2026-05-01 13:19:29] 2026-05-01 11:18:15,788 | INFO     | ..............................
[2026-05-01 13:19:29] 2026-05-01 11:18:15,934 | INFO     | 
[2026-05-01 13:19:29] 2026-05-01 11:18:15,934 | INFO     | job summary report
[2026-05-01 13:19:29] 2026-05-01 11:18:15,934 | INFO     | --------------------------------------------------
[2026-05-01 13:19:29] 2026-05-01 11:18:15,934 | INFO     | PanDA job id: 7122774055
[2026-05-01 13:19:29] 2026-05-01 11:18:15,934 | INFO     | task id: 50017022
[2026-05-01 13:19:29] 2026-05-01 11:18:15,935 | INFO     | errors: (none)
[2026-05-01 13:19:29] 2026-05-01 11:18:15,935 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 13:19:29] 2026-05-01 11:18:15,935 | INFO     | pilot state: finished 
[2026-05-01 13:19:29] 2026-05-01 11:18:15,935 | INFO     | transexitcode: 0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,935 | INFO     | exeerrorcode: 0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,935 | INFO     | exeerrordiag: 
[2026-05-01 13:19:29] 2026-05-01 11:18:15,935 | INFO     | exitcode: 0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,935 | INFO     | exitmsg: OK
[2026-05-01 13:19:29] 2026-05-01 11:18:15,935 | INFO     | cpuconsumptiontime: 81853 s
[2026-05-01 13:19:29] 2026-05-01 11:18:15,935 | INFO     | nevents: 400
[2026-05-01 13:19:29] 2026-05-01 11:18:15,936 | INFO     | neventsw: 0
[2026-05-01 13:19:29] 2026-05-01 11:18:15,936 | INFO     | pid: 14036
[2026-05-01 13:19:29] 2026-05-01 11:18:15,936 | INFO     | pgrp: 14036
[2026-05-01 13:19:29] 2026-05-01 11:18:15,936 | INFO     | corecount: 8
[2026-05-01 13:19:29] 2026-05-01 11:18:15,936 | INFO     | event service: False
[2026-05-01 13:19:29] 2026-05-01 11:18:15,936 | INFO     | sizes: {0: 2275855, 1: 2276768, 2: 2278370, 12: 2278370, 21794: 2312378, 21800: 2321652, 21803: 2321836, 21804: 2322030}
[2026-05-01 13:19:29] 2026-05-01 11:18:15,936 | INFO     | --------------------------------------------------
[2026-05-01 13:19:29] 2026-05-01 11:18:15,936 | INFO     | 
[2026-05-01 13:19:29] 2026-05-01 11:18:15,937 | INFO     | executing command: ls -lF /var/lib/boinc/slots/24
[2026-05-01 13:19:29] 2026-05-01 11:18:16,259 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,259 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,260 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,260 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,260 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,260 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,260 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,260 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,260 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,260 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,260 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,261 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,261 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,261 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,261 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,261 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,261 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,261 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 13:19:29] 2026-05-01 11:18:16,261 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,261 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 13:19:29] 2026-05-01 11:18:16,262 | INFO     | job 7122774055 has completed (purged errors)
[2026-05-01 13:19:29] 2026-05-01 11:18:16,262 | INFO     | overall cleanup function is called
[2026-05-01 13:19:29] 2026-05-01 11:18:17,271 | INFO     | --- collectZombieJob: --- 10, [14036]
[2026-05-01 13:19:29] 2026-05-01 11:18:17,271 | INFO     | zombie collector waiting for pid 14036
[2026-05-01 13:19:29] 2026-05-01 11:18:17,271 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 13:19:29] 2026-05-01 11:18:17,271 | INFO     | collected zombie processes
[2026-05-01 13:19:29] 2026-05-01 11:18:17,271 | INFO     | will attempt to kill all subprocesses of pid=14036
[2026-05-01 13:19:29] 2026-05-01 11:18:17,341 | INFO     | process IDs to be killed: [14036] (in reverse order)
[2026-05-01 13:19:29] 2026-05-01 11:18:17,457 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 13:19:29] 2026-05-01 11:18:17,458 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 13:19:29] 2026-05-01 11:18:17,460 | INFO     | did not find any defunct processes belonging to 14036
[2026-05-01 13:19:29] 2026-05-01 11:18:17,462 | INFO     | did not find any defunct processes belonging to 14036
[2026-05-01 13:19:29] 2026-05-01 11:18:17,463 | INFO     | Ready for new job
[2026-05-01 13:19:29] 2026-05-01 11:18:17,465 | INFO     | ***************************************
[2026-05-01 13:19:29] 2026-05-01 11:18:17,465 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 13:19:29] 2026-05-01 11:18:17,465 | INFO     | ***************************************
[2026-05-01 13:19:29] 2026-05-01 11:18:17,465 | INFO     | 
[2026-05-01 13:19:29] 2026-05-01 11:18:17,466 | INFO     | pilot is running in a VM
[2026-05-01 13:19:29] 2026-05-01 11:18:17,466 | INFO     | architecture information:
[2026-05-01 13:19:29] 2026-05-01 11:18:17,466 | INFO     | executing command: cat /etc/os-release
[2026-05-01 13:19:29] 2026-05-01 11:18:17,492 | INFO     | cat /etc/os-release:
[2026-05-01 13:19:29] NAME="CentOS Linux"
[2026-05-01 13:19:29] VERSION="7 (Core)"
[2026-05-01 13:19:29] ID="centos"
[2026-05-01 13:19:29] ID_LIKE="rhel fedora"
[2026-05-01 13:19:29] VERSION_ID="7"
[2026-05-01 13:19:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 13:19:29] ANSI_COLOR="0;31"
[2026-05-01 13:19:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 13:19:29] HOME_URL="https://www.centos.org/"
[2026-05-01 13:19:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 13:19:29] 
[2026-05-01 13:19:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 13:19:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 13:19:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 13:19:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 13:19:29] 
[2026-05-01 13:19:29] 2026-05-01 11:18:17,492 | INFO     | ***************************************
[2026-05-01 13:19:29] 2026-05-01 11:18:17,997 | INFO     | executing command: df -mP /var/lib/boinc/slots/24
[2026-05-01 13:19:29] 2026-05-01 11:18:18,159 | INFO     | sufficient remaining disk space (495996370944 B)
[2026-05-01 13:19:29] 2026-05-01 11:18:18,160 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 13:19:29] 2026-05-01 11:18:18,160 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 13:19:29] 2026-05-01 11:18:18,160 | INFO     | update_server=False
[2026-05-01 13:19:29] 2026-05-01 11:18:18,160 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 13:19:29] 2026-05-01 11:18:18,161 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 13:19:29] 2026-05-01 11:18:18,229 | INFO     | all payload control threads have been joined
[2026-05-01 13:19:29] 2026-05-01 11:18:18,296 | INFO     | all data control threads have been joined
[2026-05-01 13:19:29] 2026-05-01 11:18:18,538 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-01 13:19:29] 2026-05-01 11:18:18,538 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-01 13:19:29] 2026-05-01 11:18:18,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 13:19:29] 2026-05-01 11:18:18,538 | INFO     | will abort loop
[2026-05-01 13:19:29] 2026-05-01 11:18:19,117 | INFO     | all job control threads have been joined
[2026-05-01 13:19:29] 2026-05-01 11:18:19,166 | INFO     | [job] retrieve thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:19,235 | INFO     | [payload] control thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:19,302 | INFO     | [data] control thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:19,545 | INFO     | [job] job monitor thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:19,570 | INFO     | [job] validate thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:19,571 | INFO     | [data] copytool_in thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:19,750 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:19,981 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:20,105 | INFO     | [payload] failed_post thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:20,123 | INFO     | [job] control thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:20,168 | INFO     | [data] copytool_out thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:20,280 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:20,590 | INFO     | [payload] validate_post thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:20,721 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 13:19:29] 2026-05-01 11:18:20,949 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 13:19:29] 2026-05-01 11:18:21,955 | INFO     | [job] queue monitor thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:24,729 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:29,182 | INFO     | job.realtimelogging is not enabled
[2026-05-01 13:19:29] 2026-05-01 11:18:30,188 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 13:19:29] 2026-05-01 11:18:47,893 | INFO     | PID=9577 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-05-01 13:19:29] 2026-05-01 11:18:47,893 | INFO     | .. there are 2 such processes running
[2026-05-01 13:19:29] 2026-05-01 11:18:47,899 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 13:19:29] 2026-05-01 11:18:47,899 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 13:19:29] 2026-05-01 11:18:47,899 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 13:19:29] 2026-05-01 11:19:17,424 | INFO     | [monitor] cgroup control has ended
[2026-05-01 13:19:29] 2026-05-01 11:19:18,986 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139818014279488)>', '<ExcThread(monitor, started 139817711015680)>']
[2026-05-01 13:19:29] 2026-05-01 11:19:19,084 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 13:19:29] 2026-05-01 11:19:19,085 | INFO     | [monitor] control thread has ended
[2026-05-01 13:19:29] 2026-05-01 11:19:24,012 | INFO     | all workflow threads have been joined
[2026-05-01 13:19:29] 2026-05-01 11:19:24,012 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 13:19:29] 2026-05-01 11:19:24,012 | INFO     | traces error code: 0
[2026-05-01 13:19:29] 2026-05-01 11:19:24,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 13:19:29] 2026-05-01 11:19:24,465 [wrapper] ==== pilot stdout END ====
[2026-05-01 13:19:29] 2026-05-01 11:19:24,556 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 13:19:29] 2026-05-01 11:19:24,622 [wrapper] pilotpid: 9577
[2026-05-01 13:19:29] 2026-05-01 11:19:24,706 [wrapper] Pilot exit status: 0
[2026-05-01 13:19:29] 2026-05-01 11:19:25,153 [wrapper] pandaids: 7122774055
[2026-05-01 13:19:29] 2026-05-01 11:19:26,177 [wrapper] cleanup supervisor_pilot 22227 9578
[2026-05-01 13:19:29] 2026-05-01 11:19:26,270 [wrapper] Test setup, not cleaning
[2026-05-01 13:19:29] 2026-05-01 11:19:26,349 [wrapper] apfmon messages muted
[2026-05-01 13:19:29] 2026-05-01 11:19:26,419 [wrapper] ==== wrapper stdout END ====
[2026-05-01 13:19:29] 2026-05-01 11:19:26,525 [wrapper] ==== wrapper stderr END ====
[2026-05-01 13:19:29]  *** Error codes and diagnostics ***
[2026-05-01 13:19:29]     "exeErrorCode": 0,
[2026-05-01 13:19:29]     "pilotErrorCode": 0,
[2026-05-01 13:19:29]  *** Listing of results directory ***
[2026-05-01 13:19:29] total 492856
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc    683926 Apr 30 13:26 pilot3.tar.gz
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc      5631 Apr 30 13:29 queuedata.json
[2026-05-01 13:19:29] -rwx------. 1 boinc boinc     36322 Apr 30 13:29 runpilot2-wrapper.sh
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc       100 May  1 07:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 13:19:29] -rwxr-xr-x. 1 boinc boinc      7986 May  1 07:08 run_atlas
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc       105 May  1 07:08 job.xml
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc      6307 May  1 07:08 init_data.xml
[2026-05-01 13:19:29] -rw-r--r--. 2 boinc boinc 314470439 May  1 07:08 EVNT.50017015._000013.pool.root.1
[2026-05-01 13:19:29] -rw-r--r--. 2 boinc boinc     15667 May  1 07:08 start_atlas.sh
[2026-05-01 13:19:29] drwxrwx--x. 2 boinc boinc        68 May  1 07:08 shared
[2026-05-01 13:19:29] -rw-r--r--. 2 boinc boinc    697391 May  1 07:08 input.tar.gz
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc         0 May  1 07:08 boinc_lockfile
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc      2528 May  1 07:08 pandaJob.out
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc       415 May  1 07:14 workernode_map.json
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc   1001814 May  1 07:14 agis_schedconf.cvmfs.json
[2026-05-01 13:19:29] drwx------. 5 boinc boinc      4096 May  1 07:14 pilot3
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc 181117175 May  1 13:16 HITS.50017022._000321.pool.root.1
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc       489 May  1 13:17 boinc_task_state.xml
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc      1011 May  1 13:18 memory_monitor_summary.json
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc   1508687 May  1 13:18 agis_ddmendpoints.agis.ALL.json
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc    475830 May  1 13:18 log.50017022._000321.job.log.tgz.1
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc      6326 May  1 13:18 heartbeat_new.json
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc      6217 May  1 13:18 heartbeat.json
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc        95 May  1 13:18 pilot_heartbeat.json
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc      5141 May  1 13:19 pilotlog.txt
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc   2008182 May  1 13:19 log.50017022._000321.job.log.1
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc      8192 May  1 13:19 boinc_mmap_file
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc        28 May  1 13:19 wrapper_checkpoint.txt
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc       357 May  1 13:19 output.list
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc       410 May  1 13:19 runtime_log
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc   2498560 May  1 13:19 result.tar.gz
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc      8455 May  1 13:19 runtime_log.err
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc       656 May  1 13:19 3d366b01b8ab.diag
[2026-05-01 13:19:29] -rw-r--r--. 1 boinc boinc     20627 May  1 13:19 stderr.txt
[2026-05-01 13:19:29] HITS file was successfully produced:
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc 181117175 May  1 13:16 shared/HITS.pool.root.1
[2026-05-01 13:19:29]  *** Contents of shared directory: ***
[2026-05-01 13:19:29] total 487120
[2026-05-01 13:19:29] -rw-r--r--. 2 boinc boinc 314470439 May  1 07:08 ATLAS.root_0
[2026-05-01 13:19:29] -rw-r--r--. 2 boinc boinc     15667 May  1 07:08 start_atlas.sh
[2026-05-01 13:19:29] -rw-r--r--. 2 boinc boinc    697391 May  1 07:08 input.tar.gz
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc 181117175 May  1 13:16 HITS.pool.root.1
[2026-05-01 13:19:29] -rw-------. 1 boinc boinc   2498560 May  1 13:19 result.tar.gz
13:19:31 (5590): run_atlas exited; CPU time 82059.263000
13:19:31 (5590): called boinc_finish(0)

</stderr_txt>
]]>

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