Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:16:56 (3236520): wrapper (7.7.26015): starting
22:16:56 (3236520): wrapper: running run_atlas (--nthreads 12)
[2026-05-01 22:16:56] Arguments: --nthreads 12
[2026-05-01 22:16:56] Threads: 12
[2026-05-01 22:16:56] Checking for CVMFS
[2026-05-01 22:16:56] No cvmfs_config command found, will try listing directly
[2026-05-01 22:16:56] CVMFS is ok
[2026-05-01 22:16:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-01 22:16:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-01 22:16:56] Further information can be found at the LHC@home message board.
[2026-05-01 22:16:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 22:16:56] Checking for apptainer binary...
[2026-05-01 22:16:56] which: no apptainer in ((null))
[2026-05-01 22:16:56] apptainer is not installed, using version from CVMFS
[2026-05-01 22:16:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 22:16:56] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot168/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut25.grid.cesnet.cz
[2026-05-01 22:16:56] apptainer works
[2026-05-01 22:16:56] Set ATHENA_PROC_NUMBER=12
[2026-05-01 22:16:56] Set ATHENA_CORE_NUMBER=12
[2026-05-01 22:16:56] Starting ATLAS job with PandaID=7122824462
[2026-05-01 22:16:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot168/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 22:52:17]  *** The last 200 lines of the pilot log: ***
[2026-05-01 22:52:17]  domain=
[2026-05-01 22:52:17]  filesize=338903
[2026-05-01 22:52:17]  filetype=log
[2026-05-01 22:52:17]  guid=52966c92-558b-4221-a623-114e9b4ae839
[2026-05-01 22:52:17]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-01 22:52:17]  is_altstaged=None
[2026-05-01 22:52:17]  is_tar=False
[2026-05-01 22:52:17]  lfn=log.50017102._000311.job.log.tgz.1
[2026-05-01 22:52:17]  mtime=0
[2026-05-01 22:52:17]  protocol_id=None
[2026-05-01 22:52:17]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-01 22:52:17]  replicas=None
[2026-05-01 22:52:17]  scope=mc23_13p6TeV
[2026-05-01 22:52:17]  status=None
[2026-05-01 22:52:17]  status_code=0
[2026-05-01 22:52:17]  storage_token=
[2026-05-01 22:52:17]  surl=/var/lib/boinc/var/slot168/slots/1/PanDA_Pilot-7122824462/log.50017102._000311.job.log.tgz.1
[2026-05-01 22:52:17]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/66/log.50017102._000311.job.log.tgz.1
[2026-05-01 22:52:17]  workdir=None
[2026-05-01 22:52:17] ]
[2026-05-01 22:52:17] 2026-05-01 20:51:14,723 | INFO     | transferring file log.50017102._000311.job.log.tgz.1 from /var/lib/boinc/var/slot168/slots/1/PanDA_Pilot-7122824462/log.50017102._000311.job.log.tgz.1 to /var/lib/
[2026-05-01 22:52:17] 2026-05-01 20:51:14,723 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot168/slots/1/PanDA_Pilot-7122824462/log.50017102._000311.job.log.tgz.1 /var/lib/boinc/var/slot168/slots/1/
[2026-05-01 22:52:17] 2026-05-01 20:51:14,740 | INFO     | adding to output.list: log.50017102._000311.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/33/66/log.50017102._000311.job.log.tg
[2026-05-01 22:52:17] 2026-05-01 20:51:14,740 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-01 22:52:17] 2026-05-01 20:51:14,740 | INFO     | summary of transferred files:
[2026-05-01 22:52:17] 2026-05-01 20:51:14,740 | INFO     |  -- lfn=log.50017102._000311.job.log.tgz.1, status_code=0, status=transferred
[2026-05-01 22:52:17] 2026-05-01 20:51:14,740 | INFO     | stage-out finished correctly
[2026-05-01 22:52:17] 2026-05-01 20:51:14,803 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-01 22:52:17] 2026-05-01 20:51:15,682 | INFO     | monitor loop #156: job 0:7122824462 is in state 'finished'
[2026-05-01 22:52:17] 2026-05-01 20:51:15,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-01 22:52:17] 2026-05-01 20:51:17,387 | INFO     | job 7122824462 has state=finished
[2026-05-01 22:52:17] 2026-05-01 20:51:17,387 | INFO     | preparing for final server update for job 7122824462 in state='finished'
[2026-05-01 22:52:17] 2026-05-01 20:51:17,387 | INFO     | reading metadata from: /var/lib/boinc/var/slot168/slots/1/PanDA_Pilot-7122824462/jobReport.json
[2026-05-01 22:52:17] 2026-05-01 20:51:17,392 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot168/slots/1/workernode_map.json
[2026-05-01 22:52:17] 2026-05-01 20:51:17,393 | INFO     | this job has now completed (state=finished)
[2026-05-01 22:52:17] 2026-05-01 20:51:17,393 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-01 22:52:17] 2026-05-01 20:51:17,393 | INFO     | log transfer has been attempted: DONE
[2026-05-01 22:52:17] 2026-05-01 20:51:17,393 | INFO     | job 7122824462 has finished - writing final server update
[2026-05-01 22:52:17] 2026-05-01 20:51:17,393 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2079164/.job.ad'
[2026-05-01 22:52:17] 2026-05-01 20:51:17,393 | INFO     | total number of processed events: 400 (read)
[2026-05-01 22:52:17] 2026-05-01 20:51:17,417 | INFO     | using path: /var/lib/boinc/var/slot168/slots/1/PanDA_Pilot-7122824462/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 22:52:17] 2026-05-01 20:51:17,418 | INFO     | extracted standard info from prmon json
[2026-05-01 22:52:17] 2026-05-01 20:51:17,418 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 22:52:17] 2026-05-01 20:51:17,418 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 22:52:17] 2026-05-01 20:51:17,418 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 22:52:17] 2026-05-01 20:51:17,419 | INFO     | fitting pss+swap vs Time
[2026-05-01 22:52:17] 2026-05-01 20:51:17,419 | INFO     | sum of square deviations: 6094998.0
[2026-05-01 22:52:17] 2026-05-01 20:51:17,419 | INFO     | sum of deviations: 70692656.00000001
[2026-05-01 22:52:17] 2026-05-01 20:51:17,419 | INFO     | mean x (centered): 0.0
[2026-05-01 22:52:17] 2026-05-01 20:51:17,419 | INFO     | mean y: 2745179.777777778
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | intersect: 2745179.777777778
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | chi2: 5.887120545865785e-05
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | current memory leak: 11.60 B/s (using 27 data points, chi2=0.00)
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | could have reported an average CPU frequency of 3613 MHz (5 samples)
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | ..............................
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | . Timing measurements:
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | . get job = 0 s
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | . initial setup = 4 s
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | . payload setup = 6 s
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | . stage-in = 0 s
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | . payload execution = 2025 s
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | . stage-out = 0 s
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | . log creation = 0 s
[2026-05-01 22:52:17] 2026-05-01 20:51:17,420 | INFO     | ..............................
[2026-05-01 22:52:17] 2026-05-01 20:51:17,468 | INFO     | 
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | job summary report
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | --------------------------------------------------
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | PanDA job id: 7122824462
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | task id: 50017102
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | errors: (none)
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | pilot state: finished 
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | transexitcode: 0
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | exeerrorcode: 0
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | exeerrordiag: 
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | exitcode: 0
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | exitmsg: OK
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | cpuconsumptiontime: 21472 s
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | nevents: 400
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | neventsw: 0
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | pid: 3246826
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | pgrp: 3246826
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | corecount: 12
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | event service: False
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | sizes: {0: 2277095, 10: 2277095, 2035: 2302150, 2036: 2311227, 2037: 2311227, 2039: 2311453}
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | --------------------------------------------------
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | 
[2026-05-01 22:52:17] 2026-05-01 20:51:17,469 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot168/slots/1
[2026-05-01 22:52:17] 2026-05-01 20:51:17,488 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,488 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,488 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | job 7122824462 has completed (purged errors)
[2026-05-01 22:52:17] 2026-05-01 20:51:17,489 | INFO     | overall cleanup function is called
[2026-05-01 22:52:17] 2026-05-01 20:51:17,588 | INFO     | PID=3241089 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-05-01 22:52:17] 2026-05-01 20:51:17,588 | INFO     | .. there are 18 such processes running
[2026-05-01 22:52:17] 2026-05-01 20:51:18,497 | INFO     | --- collectZombieJob: --- 10, [3246826]
[2026-05-01 22:52:17] 2026-05-01 20:51:18,498 | INFO     | zombie collector waiting for pid 3246826
[2026-05-01 22:52:17] 2026-05-01 20:51:18,498 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 22:52:17] 2026-05-01 20:51:18,498 | INFO     | collected zombie processes
[2026-05-01 22:52:17] 2026-05-01 20:51:18,498 | INFO     | will attempt to kill all subprocesses of pid=3246826
[2026-05-01 22:52:17] 2026-05-01 20:51:18,766 | INFO     | process IDs to be killed: [3246826] (in reverse order)
[2026-05-01 22:52:17] 2026-05-01 20:51:18,929 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 22:52:17] 2026-05-01 20:51:18,929 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 22:52:17] 2026-05-01 20:51:18,949 | INFO     | did not find any defunct processes belonging to 3246826
[2026-05-01 22:52:17] 2026-05-01 20:51:18,968 | INFO     | did not find any defunct processes belonging to 3246826
[2026-05-01 22:52:17] 2026-05-01 20:51:18,968 | INFO     | Ready for new job
[2026-05-01 22:52:17] 2026-05-01 20:51:18,969 | INFO     | ***************************************
[2026-05-01 22:52:17] 2026-05-01 20:51:18,969 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 22:52:17] 2026-05-01 20:51:18,969 | INFO     | ***************************************
[2026-05-01 22:52:17] 2026-05-01 20:51:18,969 | INFO     | 
[2026-05-01 22:52:17] 2026-05-01 20:51:18,974 | INFO     | architecture information:
[2026-05-01 22:52:17] 2026-05-01 20:51:18,975 | INFO     | executing command: cat /etc/os-release
[2026-05-01 22:52:17] 2026-05-01 20:51:18,989 | INFO     | cat /etc/os-release:
[2026-05-01 22:52:17] NAME="CentOS Linux"
[2026-05-01 22:52:17] VERSION="7 (Core)"
[2026-05-01 22:52:17] ID="centos"
[2026-05-01 22:52:17] ID_LIKE="rhel fedora"
[2026-05-01 22:52:17] VERSION_ID="7"
[2026-05-01 22:52:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 22:52:17] ANSI_COLOR="0;31"
[2026-05-01 22:52:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 22:52:17] HOME_URL="https://www.centos.org/"
[2026-05-01 22:52:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 22:52:17] 
[2026-05-01 22:52:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 22:52:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 22:52:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 22:52:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 22:52:17] 
[2026-05-01 22:52:17] 2026-05-01 20:51:18,989 | INFO     | ***************************************
[2026-05-01 22:52:17] 2026-05-01 20:51:19,491 | INFO     | executing command: df -mP /var/lib/boinc/var/slot168/slots/1
[2026-05-01 22:52:17] 2026-05-01 20:51:19,507 | INFO     | sufficient remaining disk space (103844675584 B)
[2026-05-01 22:52:17] 2026-05-01 20:51:19,507 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 22:52:17] 2026-05-01 20:51:19,507 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 22:52:17] 2026-05-01 20:51:19,507 | INFO     | update_server=False
[2026-05-01 22:52:17] 2026-05-01 20:51:19,507 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 22:52:17] 2026-05-01 20:51:19,507 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 22:52:17] 2026-05-01 20:51:19,507 | INFO     | aborting loop
[2026-05-01 22:52:17] 2026-05-01 20:51:20,275 | INFO     | all data control threads have been joined
[2026-05-01 22:52:17] 2026-05-01 20:51:20,296 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 22:52:17] 2026-05-01 20:51:20,354 | INFO     | all payload control threads have been joined
[2026-05-01 22:52:17] 2026-05-01 20:51:20,512 | INFO     | [job] retrieve thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:20,513 | INFO     | [job] job monitor thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:20,625 | INFO     | [job] validate thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:20,723 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:20,786 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:20,852 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 22:52:17] 2026-05-01 20:51:20,908 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:20,987 | INFO     | all job control threads have been joined
[2026-05-01 22:52:17] 2026-05-01 20:51:21,021 | INFO     | [data] copytool_in thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:21,281 | INFO     | [data] control thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:21,304 | INFO     | [payload] failed_post thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:21,359 | INFO     | [payload] control thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:21,630 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:21,705 | INFO     | [payload] validate_post thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:21,992 | INFO     | [job] control thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:22,302 | INFO     | [data] copytool_out thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:22,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 22:52:17] 2026-05-01 20:51:23,484 | INFO     | [job] queue monitor thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:24,858 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 22:52:17] 2026-05-01 20:51:50,098 | INFO     | PID=3241089 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-01 22:52:17] 2026-05-01 20:51:50,098 | INFO     | .. there are 18 such processes running
[2026-05-01 22:52:17] 2026-05-01 20:51:50,100 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 22:52:17] 2026-05-01 20:51:50,100 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 22:52:17] 2026-05-01 20:51:50,100 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 22:52:17] 2026-05-01 20:52:10,604 | INFO     | [monitor] cgroup control has ended
[2026-05-01 22:52:17] 2026-05-01 20:52:11,868 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23357946062656)>', '<ExcThread(monitor, started 23357640664832)>']
[2026-05-01 22:52:17] 2026-05-01 20:52:12,177 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 22:52:17] 2026-05-01 20:52:12,177 | INFO     | [monitor] control thread has ended
[2026-05-01 22:52:17] 2026-05-01 20:52:16,893 | INFO     | all workflow threads have been joined
[2026-05-01 22:52:17] 2026-05-01 20:52:16,893 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 22:52:17] 2026-05-01 20:52:16,893 | INFO     | traces error code: 0
[2026-05-01 22:52:17] 2026-05-01 20:52:16,893 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 22:52:17] 2026-05-01 20:52:16,998 [wrapper] ==== pilot stdout END ====
[2026-05-01 22:52:17] 2026-05-01 20:52:17,001 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 22:52:17] 2026-05-01 20:52:17,003 [wrapper] pilotpid: 3241089
[2026-05-01 22:52:17] 2026-05-01 20:52:17,005 [wrapper] Pilot exit status: 0
[2026-05-01 22:52:17] 2026-05-01 20:52:17,012 [wrapper] pandaids: 7122824462
[2026-05-01 22:52:17] 2026-05-01 20:52:17,108 [wrapper] cleanup supervisor_pilot 3535086 3241090
[2026-05-01 22:52:17] 2026-05-01 20:52:17,111 [wrapper] Test setup, not cleaning
[2026-05-01 22:52:17] 2026-05-01 20:52:17,114 [wrapper] apfmon messages muted
[2026-05-01 22:52:17] 2026-05-01 20:52:17,116 [wrapper] ==== wrapper stdout END ====
[2026-05-01 22:52:17] 2026-05-01 20:52:17,119 [wrapper] ==== wrapper stderr END ====
[2026-05-01 22:52:17]  *** Error codes and diagnostics ***
[2026-05-01 22:52:17]     "exeErrorCode": 0,
[2026-05-01 22:52:17]     "pilotErrorCode": 0,
[2026-05-01 22:52:17]  *** Listing of results directory ***
[2026-05-01 22:52:17] total 489728
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc      5631 Apr 30 17:53 queuedata.json
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc    683926 Apr 30 17:53 pilot3.tar.gz
[2026-05-01 22:52:17] -rwx------. 1 boinc boinc     36322 Apr 30 17:53 runpilot2-wrapper.sh
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc       100 May  1 22:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 22:52:17] -rwxr-xr-x. 1 boinc boinc      7986 May  1 22:16 run_atlas
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc       105 May  1 22:16 job.xml
[2026-05-01 22:52:17] -rw-r--r--. 2 boinc boinc 321504259 May  1 22:16 EVNT.50017097._000013.pool.root.1
[2026-05-01 22:52:17] -rw-r--r--. 2 boinc boinc     15667 May  1 22:16 start_atlas.sh
[2026-05-01 22:52:17] drwxrwx--x. 2 boinc boinc      4096 May  1 22:16 shared
[2026-05-01 22:52:17] -rw-r--r--. 2 boinc boinc    697400 May  1 22:16 input.tar.gz
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc      6631 May  1 22:16 init_data.xml
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc         0 May  1 22:16 boinc_lockfile
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc      2525 May  1 22:16 pandaJob.out
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc   1003006 May  1 22:17 agis_schedconf.cvmfs.json
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc   1508687 May  1 22:17 agis_ddmendpoints.agis.ALL.json
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc       445 May  1 22:17 workernode_map.json
[2026-05-01 22:52:17] drwx------. 5 boinc boinc      4096 May  1 22:17 pilot3
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc 174684168 May  1 22:50 HITS.50017102._000311.pool.root.1
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc       487 May  1 22:51 boinc_task_state.xml
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc      1028 May  1 22:51 memory_monitor_summary.json
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc    338903 May  1 22:51 log.50017102._000311.job.log.tgz.1
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc      6371 May  1 22:51 heartbeat_new.json
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc      6262 May  1 22:51 heartbeat.json
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc        95 May  1 22:51 pilot_heartbeat.json
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc      8192 May  1 22:51 boinc_mmap_file
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc        27 May  1 22:51 wrapper_checkpoint.txt
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc      4834 May  1 22:52 pilotlog.txt
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc    240581 May  1 22:52 log.50017102._000311.job.log.1
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc       357 May  1 22:52 output.list
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc       410 May  1 22:52 runtime_log
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc    593920 May  1 22:52 result.tar.gz
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc      8846 May  1 22:52 runtime_log.err
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc       658 May  1 22:52 7b1375e2e7b3.diag
[2026-05-01 22:52:17] -rw-r--r--. 1 boinc boinc     21026 May  1 22:52 stderr.txt
[2026-05-01 22:52:17] HITS file was successfully produced:
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc 174684168 May  1 22:50 shared/HITS.pool.root.1
[2026-05-01 22:52:17]  *** Contents of shared directory: ***
[2026-05-01 22:52:17] total 485852
[2026-05-01 22:52:17] -rw-r--r--. 2 boinc boinc 321504259 May  1 22:16 ATLAS.root_0
[2026-05-01 22:52:17] -rw-r--r--. 2 boinc boinc     15667 May  1 22:16 start_atlas.sh
[2026-05-01 22:52:17] -rw-r--r--. 2 boinc boinc    697400 May  1 22:16 input.tar.gz
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc 174684168 May  1 22:50 HITS.pool.root.1
[2026-05-01 22:52:17] -rw-------. 1 boinc boinc    593920 May  1 22:52 result.tar.gz
22:52:18 (3236520): run_atlas exited; CPU time 21518.997654
22:52:18 (3236520): called boinc_finish(0)

</stderr_txt>
]]>

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