Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:27:44 (29176): wrapper (7.7.26015): starting
09:27:44 (29176): wrapper: running run_atlas (--nthreads 8)
[2026-05-01 09:27:44] Arguments: --nthreads 8
[2026-05-01 09:27:44] Threads: 8
[2026-05-01 09:27:44] Checking for CVMFS
[2026-05-01 09:27:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-01 09:27:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-01 09:27:47] Running cvmfs_config stat atlas.cern.ch
[2026-05-01 09:27:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-01 09:27:48] 2.11.2.0 6411 22463 97864 159081 3 73 20266351 25165825 96 130560 0 8831256 99.862 3819499 5990 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-01 09:27:48] CVMFS is ok
[2026-05-01 09:27:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 09:27:48] Checking for apptainer binary...
[2026-05-01 09:27:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-01 09:27:48] Running /usr/bin/apptainer --version
[2026-05-01 09:27:49] apptainer version 1.3.2-1.el7
[2026-05-01 09:27:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 09:27:59] cg-vwn379.simple-grid.lan
[2026-05-01 09:27:59] apptainer works
[2026-05-01 09:27:59] Set ATHENA_PROC_NUMBER=8
[2026-05-01 09:27:59] Set ATHENA_CORE_NUMBER=8
[2026-05-01 09:27:59] Starting ATLAS job with PandaID=7122877371
[2026-05-01 09:27:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 12:56:56]  *** The last 200 lines of the pilot log: ***
[2026-05-01 12:56:56] 2026-05-01 10:56:03,918 | INFO     | log transfer has been attempted: DONE
[2026-05-01 12:56:56] 2026-05-01 10:56:03,918 | INFO     | job 7122877371 has finished - writing final server update
[2026-05-01 12:56:56] 2026-05-01 10:56:03,919 | INFO     | total number of processed events: 400 (read)
[2026-05-01 12:56:56] 2026-05-01 10:56:03,921 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7122877371/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 12:56:56] 2026-05-01 10:56:03,921 | INFO     | extracted standard info from prmon json
[2026-05-01 12:56:56] 2026-05-01 10:56:03,921 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 12:56:56] 2026-05-01 10:56:03,922 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 12:56:56] 2026-05-01 10:56:03,922 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 12:56:56] 2026-05-01 10:56:03,926 | INFO     | fitting pss+swap vs Time
[2026-05-01 12:56:56] 2026-05-01 10:56:03,927 | INFO     | sum of square deviations: 2229146912.0
[2026-05-01 12:56:56] 2026-05-01 10:56:03,928 | INFO     | sum of deviations: 100631113546.00002
[2026-05-01 12:56:56] 2026-05-01 10:56:03,928 | INFO     | mean x (centered): 0.0
[2026-05-01 12:56:56] 2026-05-01 10:56:03,929 | INFO     | mean y: 2413497.834196891
[2026-05-01 12:56:56] 2026-05-01 10:56:03,929 | INFO     | intersect: 2413497.834196891
[2026-05-01 12:56:56] 2026-05-01 10:56:03,929 | INFO     | chi2: 8.583115785118505
[2026-05-01 12:56:56] 2026-05-01 10:56:03,930 | INFO     | sum of square deviations: 2060343747.0
[2026-05-01 12:56:56] 2026-05-01 10:56:03,931 | INFO     | sum of deviations: 110550044135.49998
[2026-05-01 12:56:56] 2026-05-01 10:56:03,931 | INFO     | mean x (centered): 0.0
[2026-05-01 12:56:56] 2026-05-01 10:56:03,932 | INFO     | mean y: 2422213.313829787
[2026-05-01 12:56:56] 2026-05-01 10:56:03,932 | INFO     | intersect: 2422213.313829787
[2026-05-01 12:56:56] 2026-05-01 10:56:03,932 | INFO     | chi2: 7.9031179261642865
[2026-05-01 12:56:56] 2026-05-01 10:56:03,932 | INFO     | current chi2=7.9031179261642865 (change=7.922505952129942 %)
[2026-05-01 12:56:56] 2026-05-01 10:56:03,932 | INFO     | right removable region: 187
[2026-05-01 12:56:56] 2026-05-01 10:56:03,933 | INFO     | sum of square deviations: 2060343747.0
[2026-05-01 12:56:56] 2026-05-01 10:56:03,934 | INFO     | sum of deviations: 32656589821.5
[2026-05-01 12:56:56] 2026-05-01 10:56:03,934 | INFO     | mean x (centered): 0.0
[2026-05-01 12:56:56] 2026-05-01 10:56:03,935 | INFO     | mean y: 2474868.037234043
[2026-05-01 12:56:56] 2026-05-01 10:56:03,935 | INFO     | intersect: 2474868.037234043
[2026-05-01 12:56:56] 2026-05-01 10:56:03,939 | INFO     | chi2: 3.227973222355975
[2026-05-01 12:56:56] 2026-05-01 10:56:03,939 | INFO     | current chi2=3.227973222355975 (change=62.39159178124256 %)
[2026-05-01 12:56:56] 2026-05-01 10:56:03,940 | INFO     | sum of square deviations: 1900284932.0
[2026-05-01 12:56:56] 2026-05-01 10:56:03,941 | INFO     | sum of deviations: -13367501569.999992
[2026-05-01 12:56:56] 2026-05-01 10:56:03,941 | INFO     | mean x (centered): 0.0
[2026-05-01 12:56:56] 2026-05-01 10:56:03,942 | INFO     | mean y: 2518604.1967213117
[2026-05-01 12:56:56] 2026-05-01 10:56:03,942 | INFO     | intersect: 2518604.1967213117
[2026-05-01 12:56:56] 2026-05-01 10:56:03,942 | INFO     | chi2: 0.9461688188061401
[2026-05-01 12:56:56] 2026-05-01 10:56:03,942 | INFO     | current chi2=0.9461688188061401 (change=70.68845515033215 %)
[2026-05-01 12:56:56] 2026-05-01 10:56:03,943 | INFO     | sum of square deviations: 1748737904.5
[2026-05-01 12:56:56] 2026-05-01 10:56:03,944 | INFO     | sum of deviations: -16635860494.5
[2026-05-01 12:56:56] 2026-05-01 10:56:03,944 | INFO     | mean x (centered): 0.0
[2026-05-01 12:56:56] 2026-05-01 10:56:03,944 | INFO     | mean y: 2521770.6685393257
[2026-05-01 12:56:56] 2026-05-01 10:56:03,944 | INFO     | intersect: 2521770.6685393257
[2026-05-01 12:56:56] 2026-05-01 10:56:03,945 | INFO     | chi2: 0.8670543952593043
[2026-05-01 12:56:56] 2026-05-01 10:56:03,945 | INFO     | current chi2=0.8670543952593043 (change=8.361554721985142 %)
[2026-05-01 12:56:56] 2026-05-01 10:56:03,945 | INFO     | left removable region: 15
[2026-05-01 12:56:56] 2026-05-01 10:56:03,945 | INFO     | sum of square deviations: 1577789583.0
[2026-05-01 12:56:56] 2026-05-01 10:56:03,947 | INFO     | sum of deviations: -4528325941.5
[2026-05-01 12:56:56] 2026-05-01 10:56:03,947 | INFO     | mean x (centered): 0.0
[2026-05-01 12:56:56] 2026-05-01 10:56:03,947 | INFO     | mean y: 2534370.168604651
[2026-05-01 12:56:56] 2026-05-01 10:56:03,947 | INFO     | intersect: 2534370.168604651
[2026-05-01 12:56:56] 2026-05-01 10:56:03,947 | INFO     | chi2: 0.0707583710951905
[2026-05-01 12:56:56] 2026-05-01 10:56:03,948 | INFO     | current memory leak: -2.87 B/s (using 172 data points, chi2=0.07)
[2026-05-01 12:56:56] 2026-05-01 10:56:03,948 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2026-05-01 12:56:56] 2026-05-01 10:56:03,948 | INFO     | ..............................
[2026-05-01 12:56:56] 2026-05-01 10:56:03,949 | INFO     | . Timing measurements:
[2026-05-01 12:56:56] 2026-05-01 10:56:03,949 | INFO     | . get job = 0 s
[2026-05-01 12:56:56] 2026-05-01 10:56:03,949 | INFO     | . initial setup = 127 s
[2026-05-01 12:56:56] 2026-05-01 10:56:03,949 | INFO     | . payload setup = 210 s
[2026-05-01 12:56:56] 2026-05-01 10:56:03,949 | INFO     | . stage-in = 0 s
[2026-05-01 12:56:56] 2026-05-01 10:56:03,949 | INFO     | . payload execution = 11864 s
[2026-05-01 12:56:56] 2026-05-01 10:56:03,949 | INFO     | . stage-out = 3 s
[2026-05-01 12:56:56] 2026-05-01 10:56:03,949 | INFO     | . log creation = 1 s
[2026-05-01 12:56:56] 2026-05-01 10:56:03,949 | INFO     | ..............................
[2026-05-01 12:56:56] 2026-05-01 10:56:04,090 | INFO     | 
[2026-05-01 12:56:56] 2026-05-01 10:56:04,090 | INFO     | job summary report
[2026-05-01 12:56:56] 2026-05-01 10:56:04,090 | INFO     | --------------------------------------------------
[2026-05-01 12:56:56] 2026-05-01 10:56:04,090 | INFO     | PanDA job id: 7122877371
[2026-05-01 12:56:56] 2026-05-01 10:56:04,090 | INFO     | task id: 50016766
[2026-05-01 12:56:56] 2026-05-01 10:56:04,090 | INFO     | errors: (none)
[2026-05-01 12:56:56] 2026-05-01 10:56:04,090 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 12:56:56] 2026-05-01 10:56:04,091 | INFO     | pilot state: finished 
[2026-05-01 12:56:56] 2026-05-01 10:56:04,091 | INFO     | transexitcode: 0
[2026-05-01 12:56:56] 2026-05-01 10:56:04,091 | INFO     | exeerrorcode: 0
[2026-05-01 12:56:56] 2026-05-01 10:56:04,091 | INFO     | exeerrordiag: 
[2026-05-01 12:56:56] 2026-05-01 10:56:04,091 | INFO     | exitcode: 0
[2026-05-01 12:56:56] 2026-05-01 10:56:04,091 | INFO     | exitmsg: OK
[2026-05-01 12:56:56] 2026-05-01 10:56:04,091 | INFO     | cpuconsumptiontime: 44023 s
[2026-05-01 12:56:56] 2026-05-01 10:56:04,091 | INFO     | nevents: 400
[2026-05-01 12:56:56] 2026-05-01 10:56:04,091 | INFO     | neventsw: 0
[2026-05-01 12:56:56] 2026-05-01 10:56:04,092 | INFO     | pid: 5222
[2026-05-01 12:56:56] 2026-05-01 10:56:04,092 | INFO     | pgrp: 5222
[2026-05-01 12:56:56] 2026-05-01 10:56:04,092 | INFO     | corecount: 8
[2026-05-01 12:56:56] 2026-05-01 10:56:04,092 | INFO     | event service: False
[2026-05-01 12:56:56] 2026-05-01 10:56:04,092 | INFO     | sizes: {0: 2275877, 1: 2276789, 2: 2278391, 13: 2278391, 12078: 2308015, 12082: 2317287, 12085: 2317471, 12086: 2317665}
[2026-05-01 12:56:56] 2026-05-01 10:56:04,092 | INFO     | --------------------------------------------------
[2026-05-01 12:56:56] 2026-05-01 10:56:04,092 | INFO     | 
[2026-05-01 12:56:56] 2026-05-01 10:56:04,092 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-05-01 12:56:56] 2026-05-01 10:56:04,306 | INFO     | PID=747 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-05-01 12:56:56] 2026-05-01 10:56:04,306 | INFO     | .. there are 2 such processes running
[2026-05-01 12:56:56] 2026-05-01 10:56:04,663 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,663 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,663 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,663 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,663 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,663 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,663 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,664 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,664 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,664 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,664 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,664 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,664 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,664 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,664 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,664 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,665 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,665 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 12:56:56] 2026-05-01 10:56:04,665 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,665 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 12:56:56] 2026-05-01 10:56:04,665 | INFO     | job 7122877371 has completed (purged errors)
[2026-05-01 12:56:56] 2026-05-01 10:56:04,665 | INFO     | overall cleanup function is called
[2026-05-01 12:56:56] 2026-05-01 10:56:05,673 | INFO     | --- collectZombieJob: --- 10, [5222]
[2026-05-01 12:56:56] 2026-05-01 10:56:05,674 | INFO     | zombie collector waiting for pid 5222
[2026-05-01 12:56:56] 2026-05-01 10:56:05,674 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 12:56:56] 2026-05-01 10:56:05,674 | INFO     | collected zombie processes
[2026-05-01 12:56:56] 2026-05-01 10:56:05,674 | INFO     | will attempt to kill all subprocesses of pid=5222
[2026-05-01 12:56:56] 2026-05-01 10:56:05,748 | INFO     | process IDs to be killed: [5222] (in reverse order)
[2026-05-01 12:56:56] 2026-05-01 10:56:06,758 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 12:56:56] 2026-05-01 10:56:06,758 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 12:56:56] 2026-05-01 10:56:06,760 | INFO     | did not find any defunct processes belonging to 5222
[2026-05-01 12:56:56] 2026-05-01 10:56:06,769 | INFO     | did not find any defunct processes belonging to 5222
[2026-05-01 12:56:56] 2026-05-01 10:56:06,770 | INFO     | Ready for new job
[2026-05-01 12:56:56] 2026-05-01 10:56:06,772 | INFO     | ***************************************
[2026-05-01 12:56:56] 2026-05-01 10:56:06,772 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 12:56:56] 2026-05-01 10:56:06,772 | INFO     | ***************************************
[2026-05-01 12:56:56] 2026-05-01 10:56:06,772 | INFO     | 
[2026-05-01 12:56:56] 2026-05-01 10:56:06,773 | INFO     | pilot is running in a VM
[2026-05-01 12:56:56] 2026-05-01 10:56:06,773 | INFO     | architecture information:
[2026-05-01 12:56:56] 2026-05-01 10:56:06,780 | INFO     | executing command: cat /etc/os-release
[2026-05-01 12:56:56] 2026-05-01 10:56:07,002 | INFO     | cat /etc/os-release:
[2026-05-01 12:56:56] NAME="CentOS Linux"
[2026-05-01 12:56:56] VERSION="7 (Core)"
[2026-05-01 12:56:56] ID="centos"
[2026-05-01 12:56:56] ID_LIKE="rhel fedora"
[2026-05-01 12:56:56] VERSION_ID="7"
[2026-05-01 12:56:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 12:56:56] ANSI_COLOR="0;31"
[2026-05-01 12:56:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 12:56:56] HOME_URL="https://www.centos.org/"
[2026-05-01 12:56:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 12:56:56] 
[2026-05-01 12:56:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 12:56:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 12:56:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 12:56:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 12:56:56] 
[2026-05-01 12:56:56] 2026-05-01 10:56:07,002 | INFO     | ***************************************
[2026-05-01 12:56:56] 2026-05-01 10:56:07,506 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-05-01 12:56:56] 2026-05-01 10:56:07,751 | INFO     | sufficient remaining disk space (496431529984 B)
[2026-05-01 12:56:56] 2026-05-01 10:56:07,751 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 12:56:56] 2026-05-01 10:56:07,751 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 12:56:56] 2026-05-01 10:56:07,752 | INFO     | update_server=False
[2026-05-01 12:56:56] 2026-05-01 10:56:07,752 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 12:56:56] 2026-05-01 10:56:08,061 | INFO     | all job control threads have been joined
[2026-05-01 12:56:56] 2026-05-01 10:56:08,266 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 12:56:56] 2026-05-01 10:56:08,489 | INFO     | all data control threads have been joined
[2026-05-01 12:56:56] 2026-05-01 10:56:08,721 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 12:56:56] 2026-05-01 10:56:08,722 | INFO     | aborting loop
[2026-05-01 12:56:56] 2026-05-01 10:56:08,757 | INFO     | [job] retrieve thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:08,947 | INFO     | all payload control threads have been joined
[2026-05-01 12:56:56] 2026-05-01 10:56:09,022 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:09,067 | INFO     | [job] control thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:09,105 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 12:56:56] 2026-05-01 10:56:09,126 | INFO     | [payload] failed_post thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:09,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 12:56:56] 2026-05-01 10:56:09,221 | INFO     | [data] copytool_in thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:09,352 | INFO     | [job] validate thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:09,495 | INFO     | [data] control thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:09,499 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:09,560 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:09,727 | INFO     | [job] job monitor thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:09,943 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:09,953 | INFO     | [payload] control thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:10,111 | INFO     | [job] queue monitor thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:10,144 | INFO     | [payload] validate_post thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:10,276 | INFO     | [data] copytool_out thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:13,147 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 12:56:56] 2026-05-01 10:56:36,434 | INFO     | PID=747 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j
[2026-05-01 12:56:56] 2026-05-01 10:56:36,434 | INFO     | .. there are 2 such processes running
[2026-05-01 12:56:56] 2026-05-01 10:56:36,444 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 12:56:56] 2026-05-01 10:56:36,445 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 12:56:56] 2026-05-01 10:56:36,445 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 12:56:56] 2026-05-01 10:56:44,184 | INFO     | [monitor] cgroup control has ended
[2026-05-01 12:56:56] 2026-05-01 10:56:45,172 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140247519536960)>', '<ExcThread(monitor, started 140247232923392)>']
[2026-05-01 12:56:56] 2026-05-01 10:56:45,498 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 12:56:56] 2026-05-01 10:56:45,499 | INFO     | [monitor] control thread has ended
[2026-05-01 12:56:56] 2026-05-01 10:56:50,198 | INFO     | all workflow threads have been joined
[2026-05-01 12:56:56] 2026-05-01 10:56:50,199 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 12:56:56] 2026-05-01 10:56:50,199 | INFO     | traces error code: 0
[2026-05-01 12:56:56] 2026-05-01 10:56:50,199 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 12:56:56] 2026-05-01 10:56:51,414 [wrapper] ==== pilot stdout END ====
[2026-05-01 12:56:56] 2026-05-01 10:56:51,506 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 12:56:56] 2026-05-01 10:56:51,579 [wrapper] pilotpid: 747
[2026-05-01 12:56:56] 2026-05-01 10:56:51,617 [wrapper] Pilot exit status: 0
[2026-05-01 12:56:56] 2026-05-01 10:56:52,103 [wrapper] pandaids: 7122877371
[2026-05-01 12:56:56] 2026-05-01 10:56:52,973 [wrapper] cleanup supervisor_pilot 11510 748
[2026-05-01 12:56:56] 2026-05-01 10:56:53,086 [wrapper] Test setup, not cleaning
[2026-05-01 12:56:56] 2026-05-01 10:56:53,153 [wrapper] apfmon messages muted
[2026-05-01 12:56:56] 2026-05-01 10:56:53,278 [wrapper] ==== wrapper stdout END ====
[2026-05-01 12:56:56] 2026-05-01 10:56:53,372 [wrapper] ==== wrapper stderr END ====
[2026-05-01 12:56:56]  *** Error codes and diagnostics ***
[2026-05-01 12:56:56]     "exeErrorCode": 0,
[2026-05-01 12:56:56]     "pilotErrorCode": 0,
[2026-05-01 12:56:56]  *** Listing of results directory ***
[2026-05-01 12:56:56] total 460624
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc    683926 Apr 30 20:30 pilot3.tar.gz
[2026-05-01 12:56:56] -rwx------. 1 boinc boinc     36322 Apr 30 20:33 runpilot2-wrapper.sh
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc      5631 Apr 30 20:33 queuedata.json
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc       100 May  1 09:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 12:56:56] -rwxr-xr-x. 1 boinc boinc      7986 May  1 09:27 run_atlas
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc       105 May  1 09:27 job.xml
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc      6307 May  1 09:27 init_data.xml
[2026-05-01 12:56:56] -rw-r--r--. 2 boinc boinc 303625665 May  1 09:27 EVNT.50016763._000034.pool.root.1
[2026-05-01 12:56:56] -rw-r--r--. 2 boinc boinc     15667 May  1 09:27 start_atlas.sh
[2026-05-01 12:56:56] drwxrwx--x. 2 boinc boinc        68 May  1 09:27 shared
[2026-05-01 12:56:56] -rw-r--r--. 2 boinc boinc    697396 May  1 09:27 input.tar.gz
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc         0 May  1 09:27 boinc_lockfile
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc      2554 May  1 09:27 pandaJob.out
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc       415 May  1 09:34 workernode_map.json
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc   1002147 May  1 09:34 agis_schedconf.cvmfs.json
[2026-05-01 12:56:56] drwx------. 5 boinc boinc      4096 May  1 09:34 pilot3
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc 160939395 May  1 12:54 HITS.50016766._000831.pool.root.1
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc       489 May  1 12:55 boinc_task_state.xml
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc      1012 May  1 12:55 memory_monitor_summary.json
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc   1508687 May  1 12:55 agis_ddmendpoints.agis.ALL.json
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc    367579 May  1 12:55 log.50016766._000831.job.log.tgz.1
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc      6334 May  1 12:56 heartbeat_new.json
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc      6225 May  1 12:56 heartbeat.json
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc        95 May  1 12:56 pilot_heartbeat.json
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc        28 May  1 12:56 wrapper_checkpoint.txt
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc      8192 May  1 12:56 boinc_mmap_file
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc      4881 May  1 12:56 pilotlog.txt
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc   1129943 May  1 12:56 log.50016766._000831.job.log.1
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc       357 May  1 12:56 output.list
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc       410 May  1 12:56 runtime_log
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc   1515520 May  1 12:56 result.tar.gz
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc      8439 May  1 12:56 runtime_log.err
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc       656 May  1 12:56 a0795932d89f.diag
[2026-05-01 12:56:56] -rw-r--r--. 1 boinc boinc     20700 May  1 12:56 stderr.txt
[2026-05-01 12:56:56] HITS file was successfully produced:
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc 160939395 May  1 12:54 shared/HITS.pool.root.1
[2026-05-01 12:56:56]  *** Contents of shared directory: ***
[2026-05-01 12:56:56] total 455860
[2026-05-01 12:56:56] -rw-r--r--. 2 boinc boinc 303625665 May  1 09:27 ATLAS.root_0
[2026-05-01 12:56:56] -rw-r--r--. 2 boinc boinc     15667 May  1 09:27 start_atlas.sh
[2026-05-01 12:56:56] -rw-r--r--. 2 boinc boinc    697396 May  1 09:27 input.tar.gz
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc 160939395 May  1 12:54 HITS.pool.root.1
[2026-05-01 12:56:56] -rw-------. 1 boinc boinc   1515520 May  1 12:56 result.tar.gz
12:56:57 (29176): run_atlas exited; CPU time 44140.102161
12:56:57 (29176): called boinc_finish(0)

</stderr_txt>
]]>

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