Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:46:19 (612): wrapper (7.7.26015): starting
05:46:19 (612): wrapper: running run_atlas (--nthreads 8)
[2026-05-01 05:46:19] Arguments: --nthreads 8
[2026-05-01 05:46:19] Threads: 8
[2026-05-01 05:46:19] Checking for CVMFS
[2026-05-01 05:46:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-01 05:46:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-01 05:46:19] Running cvmfs_config stat atlas.cern.ch
[2026-05-01 05:46:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-01 05:46:20] 2.11.2.0 2379 22239 98544 159076 2 103 19432362 25165824 352 130560 0 7786483 99.883 3081856 4236 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-01 05:46:20] CVMFS is ok
[2026-05-01 05:46:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 05:46:20] Checking for apptainer binary...
[2026-05-01 05:46:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-01 05:46:20] Running /usr/bin/apptainer --version
[2026-05-01 05:46:20] apptainer version 1.3.2-1.el7
[2026-05-01 05:46:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 05:46:21] cg-vwn406.simple-grid.lan
[2026-05-01 05:46:21] apptainer works
[2026-05-01 05:46:21] Set ATHENA_PROC_NUMBER=8
[2026-05-01 05:46:21] Set ATHENA_CORE_NUMBER=8
[2026-05-01 05:46:21] Starting ATLAS job with PandaID=7122861521
[2026-05-01 05:46:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 10:44:27]  *** The last 200 lines of the pilot log: ***
[2026-05-01 10:44:27] 2026-05-01 08:43:13,703 | INFO     | this job has now completed (state=finished)
[2026-05-01 10:44:27] 2026-05-01 08:43:13,704 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-01 10:44:27] 2026-05-01 08:43:13,704 | INFO     | log transfer has been attempted: DONE
[2026-05-01 10:44:27] 2026-05-01 08:43:13,704 | INFO     | job 7122861521 has finished - writing final server update
[2026-05-01 10:44:27] 2026-05-01 08:43:13,704 | INFO     | total number of processed events: 400 (read)
[2026-05-01 10:44:27] 2026-05-01 08:43:13,706 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-7122861521/memory_monitor_summary.json (trf name=prmon)
[2026-05-01 10:44:27] 2026-05-01 08:43:13,707 | INFO     | extracted standard info from prmon json
[2026-05-01 10:44:27] 2026-05-01 08:43:13,707 | INFO     | extracted standard memory fields from prmon json
[2026-05-01 10:44:27] 2026-05-01 08:43:13,707 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-01 10:44:27] 2026-05-01 08:43:13,707 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-01 10:44:27] 2026-05-01 08:43:13,713 | INFO     | fitting pss+swap vs Time
[2026-05-01 10:44:27] 2026-05-01 08:43:13,714 | INFO     | sum of square deviations: 7641036290.0
[2026-05-01 10:44:27] 2026-05-01 08:43:13,716 | INFO     | sum of deviations: 21400907428.0
[2026-05-01 10:44:27] 2026-05-01 08:43:13,717 | INFO     | mean x (centered): 0.0
[2026-05-01 10:44:27] 2026-05-01 08:43:13,717 | INFO     | mean y: 2508657.786941581
[2026-05-01 10:44:27] 2026-05-01 08:43:13,717 | INFO     | intersect: 2508657.786941581
[2026-05-01 10:44:27] 2026-05-01 08:43:13,718 | INFO     | chi2: 2.4103083796550164
[2026-05-01 10:44:27] 2026-05-01 08:43:13,718 | INFO     | sum of square deviations: 7253894147.5
[2026-05-01 10:44:27] 2026-05-01 08:43:13,721 | INFO     | sum of deviations: 40045520492.50001
[2026-05-01 10:44:27] 2026-05-01 08:43:13,721 | INFO     | mean x (centered): 0.0
[2026-05-01 10:44:27] 2026-05-01 08:43:13,721 | INFO     | mean y: 2515894.262237762
[2026-05-01 10:44:27] 2026-05-01 08:43:13,722 | INFO     | intersect: 2515894.262237762
[2026-05-01 10:44:27] 2026-05-01 08:43:13,722 | INFO     | chi2: 1.6333568285129847
[2026-05-01 10:44:27] 2026-05-01 08:43:13,722 | INFO     | current chi2=1.6333568285129847 (change=32.234528896805955 %)
[2026-05-01 10:44:27] 2026-05-01 08:43:13,723 | INFO     | sum of square deviations: 6880054580.0
[2026-05-01 10:44:27] 2026-05-01 08:43:13,726 | INFO     | sum of deviations: 38782002025.0
[2026-05-01 10:44:27] 2026-05-01 08:43:13,726 | INFO     | mean x (centered): 0.0
[2026-05-01 10:44:27] 2026-05-01 08:43:13,726 | INFO     | mean y: 2515378.8113879003
[2026-05-01 10:44:27] 2026-05-01 08:43:13,726 | INFO     | intersect: 2515378.8113879003
[2026-05-01 10:44:27] 2026-05-01 08:43:13,727 | INFO     | chi2: 1.6339205865268502
[2026-05-01 10:44:27] 2026-05-01 08:43:13,727 | INFO     | current chi2=1.6339205865268502 (change=-0.034515300271453414 %)
[2026-05-01 10:44:27] 2026-05-01 08:43:13,727 | INFO     | right removable region: 280
[2026-05-01 10:44:27] 2026-05-01 08:43:13,727 | INFO     | sum of square deviations: 7253894147.5
[2026-05-01 10:44:27] 2026-05-01 08:43:13,730 | INFO     | sum of deviations: -23663264966.500004
[2026-05-01 10:44:27] 2026-05-01 08:43:13,731 | INFO     | mean x (centered): 0.0
[2026-05-01 10:44:27] 2026-05-01 08:43:13,731 | INFO     | mean y: 2526265.8006993006
[2026-05-01 10:44:27] 2026-05-01 08:43:13,731 | INFO     | intersect: 2526265.8006993006
[2026-05-01 10:44:27] 2026-05-01 08:43:13,731 | INFO     | chi2: 0.9336465648269742
[2026-05-01 10:44:27] 2026-05-01 08:43:13,732 | INFO     | current chi2=0.9336465648269742 (change=61.264435177352475 %)
[2026-05-01 10:44:27] 2026-05-01 08:43:13,732 | INFO     | sum of square deviations: 6880054580.0
[2026-05-01 10:44:27] 2026-05-01 08:43:13,735 | INFO     | sum of deviations: -22792121313.000008
[2026-05-01 10:44:27] 2026-05-01 08:43:13,735 | INFO     | mean x (centered): 0.0
[2026-05-01 10:44:27] 2026-05-01 08:43:13,735 | INFO     | mean y: 2525886.711743772
[2026-05-01 10:44:27] 2026-05-01 08:43:13,736 | INFO     | intersect: 2525886.711743772
[2026-05-01 10:44:27] 2026-05-01 08:43:13,736 | INFO     | chi2: 0.9157483891918153
[2026-05-01 10:44:27] 2026-05-01 08:43:13,736 | INFO     | current chi2=0.9157483891918153 (change=1.9170183139350774 %)
[2026-05-01 10:44:27] 2026-05-01 08:43:13,736 | INFO     | left removable region: 10
[2026-05-01 10:44:27] 2026-05-01 08:43:13,737 | INFO     | sum of square deviations: 6103286527.5
[2026-05-01 10:44:27] 2026-05-01 08:43:13,740 | INFO     | sum of deviations: -4602404951.499998
[2026-05-01 10:44:27] 2026-05-01 08:43:13,740 | INFO     | mean x (centered): 0.0
[2026-05-01 10:44:27] 2026-05-01 08:43:13,740 | INFO     | mean y: 2533450.2925925925
[2026-05-01 10:44:27] 2026-05-01 08:43:13,740 | INFO     | intersect: 2533450.2925925925
[2026-05-01 10:44:27] 2026-05-01 08:43:13,740 | INFO     | chi2: 0.12200549456250527
[2026-05-01 10:44:27] 2026-05-01 08:43:13,741 | INFO     | current memory leak: -0.75 B/s (using 270 data points, chi2=0.12)
[2026-05-01 10:44:27] 2026-05-01 08:43:13,741 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-05-01 10:44:27] 2026-05-01 08:43:13,742 | INFO     | ..............................
[2026-05-01 10:44:27] 2026-05-01 08:43:13,742 | INFO     | . Timing measurements:
[2026-05-01 10:44:27] 2026-05-01 08:43:13,742 | INFO     | . get job = 0 s
[2026-05-01 10:44:27] 2026-05-01 08:43:13,742 | INFO     | . initial setup = 7 s
[2026-05-01 10:44:27] 2026-05-01 08:43:13,742 | INFO     | . payload setup = 17 s
[2026-05-01 10:44:27] 2026-05-01 08:43:13,742 | INFO     | . stage-in = 0 s
[2026-05-01 10:44:27] 2026-05-01 08:43:13,742 | INFO     | . payload execution = 17753 s
[2026-05-01 10:44:27] 2026-05-01 08:43:13,742 | INFO     | . stage-out = 5 s
[2026-05-01 10:44:27] 2026-05-01 08:43:13,743 | INFO     | . log creation = 1 s
[2026-05-01 10:44:27] 2026-05-01 08:43:13,743 | INFO     | ..............................
[2026-05-01 10:44:27] 2026-05-01 08:43:14,198 | INFO     | 
[2026-05-01 10:44:27] 2026-05-01 08:43:14,199 | INFO     | job summary report
[2026-05-01 10:44:27] 2026-05-01 08:43:14,199 | INFO     | --------------------------------------------------
[2026-05-01 10:44:27] 2026-05-01 08:43:14,199 | INFO     | PanDA job id: 7122861521
[2026-05-01 10:44:27] 2026-05-01 08:43:14,199 | INFO     | task id: 50017142
[2026-05-01 10:44:27] 2026-05-01 08:43:14,199 | INFO     | errors: (none)
[2026-05-01 10:44:27] 2026-05-01 08:43:14,199 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-01 10:44:27] 2026-05-01 08:43:14,199 | INFO     | pilot state: finished 
[2026-05-01 10:44:27] 2026-05-01 08:43:14,199 | INFO     | transexitcode: 0
[2026-05-01 10:44:27] 2026-05-01 08:43:14,200 | INFO     | exeerrorcode: 0
[2026-05-01 10:44:27] 2026-05-01 08:43:14,200 | INFO     | exeerrordiag: 
[2026-05-01 10:44:27] 2026-05-01 08:43:14,200 | INFO     | exitcode: 0
[2026-05-01 10:44:27] 2026-05-01 08:43:14,200 | INFO     | exitmsg: OK
[2026-05-01 10:44:27] 2026-05-01 08:43:14,200 | INFO     | cpuconsumptiontime: 72359 s
[2026-05-01 10:44:27] 2026-05-01 08:43:14,200 | INFO     | nevents: 400
[2026-05-01 10:44:27] 2026-05-01 08:43:14,200 | INFO     | neventsw: 0
[2026-05-01 10:44:27] 2026-05-01 08:43:14,200 | INFO     | pid: 9452
[2026-05-01 10:44:27] 2026-05-01 08:43:14,200 | INFO     | pgrp: 9452
[2026-05-01 10:44:27] 2026-05-01 08:43:14,201 | INFO     | corecount: 8
[2026-05-01 10:44:27] 2026-05-01 08:43:14,201 | INFO     | event service: False
[2026-05-01 10:44:27] 2026-05-01 08:43:14,201 | INFO     | sizes: {0: 2276547, 1: 2278376, 2: 2278376, 17775: 2310646, 17781: 2319644, 17783: 2319700, 17785: 2320022}
[2026-05-01 10:44:27] 2026-05-01 08:43:14,201 | INFO     | --------------------------------------------------
[2026-05-01 10:44:27] 2026-05-01 08:43:14,201 | INFO     | 
[2026-05-01 10:44:27] 2026-05-01 08:43:14,201 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-05-01 10:44:27] 2026-05-01 08:43:14,800 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,800 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,800 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,800 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,801 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,801 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,801 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,801 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,801 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,801 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,801 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,801 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,802 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,802 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,802 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,802 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,802 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,802 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 10:44:27] 2026-05-01 08:43:14,802 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,802 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 10:44:27] 2026-05-01 08:43:14,803 | INFO     | job 7122861521 has completed (purged errors)
[2026-05-01 10:44:27] 2026-05-01 08:43:14,803 | INFO     | overall cleanup function is called
[2026-05-01 10:44:27] 2026-05-01 08:43:15,811 | INFO     | --- collectZombieJob: --- 10, [9452]
[2026-05-01 10:44:27] 2026-05-01 08:43:15,812 | INFO     | zombie collector waiting for pid 9452
[2026-05-01 10:44:27] 2026-05-01 08:43:15,812 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 10:44:27] 2026-05-01 08:43:15,812 | INFO     | collected zombie processes
[2026-05-01 10:44:27] 2026-05-01 08:43:15,812 | INFO     | will attempt to kill all subprocesses of pid=9452
[2026-05-01 10:44:27] 2026-05-01 08:43:15,882 | INFO     | process IDs to be killed: [9452] (in reverse order)
[2026-05-01 10:44:27] 2026-05-01 08:43:16,839 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 10:44:27] 2026-05-01 08:43:16,839 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 10:44:27] 2026-05-01 08:43:16,842 | INFO     | did not find any defunct processes belonging to 9452
[2026-05-01 10:44:27] 2026-05-01 08:43:16,843 | INFO     | did not find any defunct processes belonging to 9452
[2026-05-01 10:44:27] 2026-05-01 08:43:16,844 | INFO     | Ready for new job
[2026-05-01 10:44:27] 2026-05-01 08:43:16,845 | INFO     | ***************************************
[2026-05-01 10:44:27] 2026-05-01 08:43:16,846 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 10:44:27] 2026-05-01 08:43:16,846 | INFO     | ***************************************
[2026-05-01 10:44:27] 2026-05-01 08:43:16,846 | INFO     | 
[2026-05-01 10:44:27] 2026-05-01 08:43:16,846 | INFO     | pilot is running in a VM
[2026-05-01 10:44:27] 2026-05-01 08:43:16,847 | INFO     | architecture information:
[2026-05-01 10:44:27] 2026-05-01 08:43:16,863 | INFO     | executing command: cat /etc/os-release
[2026-05-01 10:44:27] 2026-05-01 08:43:17,201 | INFO     | cat /etc/os-release:
[2026-05-01 10:44:27] NAME="CentOS Linux"
[2026-05-01 10:44:27] VERSION="7 (Core)"
[2026-05-01 10:44:27] ID="centos"
[2026-05-01 10:44:27] ID_LIKE="rhel fedora"
[2026-05-01 10:44:27] VERSION_ID="7"
[2026-05-01 10:44:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 10:44:27] ANSI_COLOR="0;31"
[2026-05-01 10:44:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 10:44:27] HOME_URL="https://www.centos.org/"
[2026-05-01 10:44:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 10:44:27] 
[2026-05-01 10:44:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 10:44:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 10:44:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 10:44:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 10:44:27] 
[2026-05-01 10:44:27] 2026-05-01 08:43:17,202 | INFO     | ***************************************
[2026-05-01 10:44:27] 2026-05-01 08:43:17,705 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-05-01 10:44:27] 2026-05-01 08:43:17,931 | INFO     | sufficient remaining disk space (496086548480 B)
[2026-05-01 10:44:27] 2026-05-01 08:43:17,931 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 10:44:27] 2026-05-01 08:43:17,932 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 10:44:27] 2026-05-01 08:43:17,932 | INFO     | update_server=False
[2026-05-01 10:44:27] 2026-05-01 08:43:17,932 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 10:44:27] 2026-05-01 08:43:18,474 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 10:44:27] 2026-05-01 08:43:18,500 | INFO     | all data control threads have been joined
[2026-05-01 10:44:27] 2026-05-01 08:43:18,532 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 10:44:27] 2026-05-01 08:43:18,817 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 10:44:27] 2026-05-01 08:43:18,818 | INFO     | aborting loop
[2026-05-01 10:44:27] 2026-05-01 08:43:18,830 | INFO     | all job control threads have been joined
[2026-05-01 10:44:27] 2026-05-01 08:43:18,898 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 10:44:27] 2026-05-01 08:43:18,938 | INFO     | [job] retrieve thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:19,032 | INFO     | all payload control threads have been joined
[2026-05-01 10:44:27] 2026-05-01 08:43:19,437 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:19,507 | INFO     | [data] control thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:19,824 | INFO     | [job] job monitor thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:19,837 | INFO     | [job] control thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:19,905 | INFO     | [job] queue monitor thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:19,948 | INFO     | [data] copytool_in thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:19,975 | INFO     | [payload] validate_post thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:20,011 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:20,038 | INFO     | [payload] control thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:20,185 | INFO     | [job] validate thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:20,187 | INFO     | [payload] failed_post thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:20,298 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:20,337 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:20,481 | INFO     | [data] copytool_out thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:22,541 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 10:44:27] 2026-05-01 08:43:47,432 | INFO     | PID=4856 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-05-01 10:44:27] 2026-05-01 08:43:47,432 | INFO     | .. there are 2 such processes running
[2026-05-01 10:44:27] 2026-05-01 08:43:47,432 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 10:44:27] 2026-05-01 08:43:47,432 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 10:44:27] 2026-05-01 08:43:47,432 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 10:44:27] 2026-05-01 08:44:17,656 | INFO     | [monitor] cgroup control has ended
[2026-05-01 10:44:27] 2026-05-01 08:44:17,665 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538900109120)>', '<ExcThread(monitor, started 140538594432768)>']
[2026-05-01 10:44:27] 2026-05-01 08:44:18,618 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 10:44:27] 2026-05-01 08:44:18,619 | INFO     | [monitor] control thread has ended
[2026-05-01 10:44:27] 2026-05-01 08:44:22,691 | INFO     | all workflow threads have been joined
[2026-05-01 10:44:27] 2026-05-01 08:44:22,692 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 10:44:27] 2026-05-01 08:44:22,692 | INFO     | traces error code: 0
[2026-05-01 10:44:27] 2026-05-01 08:44:22,692 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 10:44:27] 2026-05-01 08:44:23,093 [wrapper] ==== pilot stdout END ====
[2026-05-01 10:44:27] 2026-05-01 08:44:23,201 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 10:44:27] 2026-05-01 08:44:23,299 [wrapper] pilotpid: 4856
[2026-05-01 10:44:27] 2026-05-01 08:44:23,441 [wrapper] Pilot exit status: 0
[2026-05-01 10:44:27] 2026-05-01 08:44:23,704 [wrapper] pandaids: 7122861521
[2026-05-01 10:44:27] 2026-05-01 08:44:23,870 [wrapper] cleanup supervisor_pilot 28851 4857
[2026-05-01 10:44:27] 2026-05-01 08:44:23,913 [wrapper] Test setup, not cleaning
[2026-05-01 10:44:27] 2026-05-01 08:44:24,013 [wrapper] apfmon messages muted
[2026-05-01 10:44:27] 2026-05-01 08:44:24,088 [wrapper] ==== wrapper stdout END ====
[2026-05-01 10:44:27] 2026-05-01 08:44:24,240 [wrapper] ==== wrapper stderr END ====
[2026-05-01 10:44:27]  *** Error codes and diagnostics ***
[2026-05-01 10:44:27]     "exeErrorCode": 0,
[2026-05-01 10:44:27]     "pilotErrorCode": 0,
[2026-05-01 10:44:27]  *** Listing of results directory ***
[2026-05-01 10:44:27] total 493528
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc    683926 Apr 30 18:53 pilot3.tar.gz
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc      5631 Apr 30 19:36 queuedata.json
[2026-05-01 10:44:27] -rwx------. 1 boinc boinc     36322 Apr 30 19:36 runpilot2-wrapper.sh
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc       100 May  1 05:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 10:44:27] -rwxr-xr-x. 1 boinc boinc      7986 May  1 05:46 run_atlas
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc       105 May  1 05:46 job.xml
[2026-05-01 10:44:27] -rw-r--r--. 2 boinc boinc 317622340 May  1 05:46 EVNT.50017136._000025.pool.root.1
[2026-05-01 10:44:27] -rw-r--r--. 2 boinc boinc    697410 May  1 05:46 input.tar.gz
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc      6307 May  1 05:46 init_data.xml
[2026-05-01 10:44:27] -rw-r--r--. 2 boinc boinc     15667 May  1 05:46 start_atlas.sh
[2026-05-01 10:44:27] drwxrwx--x. 2 boinc boinc        68 May  1 05:46 shared
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc         0 May  1 05:46 boinc_lockfile
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc      2563 May  1 05:46 pandaJob.out
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc   1001814 May  1 05:46 agis_schedconf.cvmfs.json
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc       415 May  1 05:46 workernode_map.json
[2026-05-01 10:44:27] drwx------. 5 boinc boinc      4096 May  1 05:46 pilot3
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc 179523146 May  1 10:41 HITS.50017142._000611.pool.root.1
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc       488 May  1 10:42 boinc_task_state.xml
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc        95 May  1 10:42 pilot_heartbeat.json
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc      1018 May  1 10:43 memory_monitor_summary.json
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc   1510091 May  1 10:43 agis_ddmendpoints.agis.ALL.json
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc    422474 May  1 10:43 log.50017142._000611.job.log.tgz.1
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc      6331 May  1 10:43 heartbeat_new.json
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc      6222 May  1 10:43 heartbeat.json
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc      4882 May  1 10:44 pilotlog.txt
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc   1628820 May  1 10:44 log.50017142._000611.job.log.1
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc       357 May  1 10:44 output.list
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc       410 May  1 10:44 runtime_log
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc   2068480 May  1 10:44 result.tar.gz
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc      8439 May  1 10:44 runtime_log.err
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc       655 May  1 10:44 933719cf3949.diag
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc      8192 May  1 10:44 boinc_mmap_file
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc        28 May  1 10:44 wrapper_checkpoint.txt
[2026-05-01 10:44:27] -rw-r--r--. 1 boinc boinc     20620 May  1 10:44 stderr.txt
[2026-05-01 10:44:27] HITS file was successfully produced:
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc 179523146 May  1 10:41 shared/HITS.pool.root.1
[2026-05-01 10:44:27]  *** Contents of shared directory: ***
[2026-05-01 10:44:27] total 488216
[2026-05-01 10:44:27] -rw-r--r--. 2 boinc boinc 317622340 May  1 05:46 ATLAS.root_0
[2026-05-01 10:44:27] -rw-r--r--. 2 boinc boinc    697410 May  1 05:46 input.tar.gz
[2026-05-01 10:44:27] -rw-r--r--. 2 boinc boinc     15667 May  1 05:46 start_atlas.sh
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc 179523146 May  1 10:41 HITS.pool.root.1
[2026-05-01 10:44:27] -rw-------. 1 boinc boinc   2068480 May  1 10:44 result.tar.gz
10:44:29 (612): run_atlas exited; CPU time 72511.080695
10:44:29 (612): called boinc_finish(0)

</stderr_txt>
]]>

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