Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:37:09 (92043): wrapper (7.7.26015): starting
01:37:09 (92043): wrapper: running run_atlas (--nthreads 3)
[2026-05-01 01:37:09] Arguments: --nthreads 3
[2026-05-01 01:37:09] Threads: 3
[2026-05-01 01:37:09] Checking for CVMFS
[2026-05-01 01:37:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-01 01:37:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-01 01:37:09] Running cvmfs_config stat atlas.cern.ch
[2026-05-01 01:37:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-01 01:37:10] 2.9.2.0 78012 87 50164 159070 1 50 27376437 36864000 0 130560 0 54991 99.968 5439 9049 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-05-01 01:37:10] CVMFS is ok
[2026-05-01 01:37:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-01 01:37:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-01 01:37:10] Further information can be found at the LHC@home message board.
[2026-05-01 01:37:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-01 01:37:10] Checking for apptainer binary...
[2026-05-01 01:37:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-01 01:37:10] Running /usr/bin/apptainer --version
[2026-05-01 01:37:10] apptainer version 1.4.1-1.1
[2026-05-01 01:37:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-01 01:37:10] atlasA215
[2026-05-01 01:37:10] apptainer works
[2026-05-01 01:37:10] Set ATHENA_PROC_NUMBER=3
[2026-05-01 01:37:10] Set ATHENA_CORE_NUMBER=3
[2026-05-01 01:37:10] Starting ATLAS job with PandaID=7122780655
[2026-05-01 01:37:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-01 03:42:36]  *** The last 200 lines of the pilot log: ***
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | job 7122780655 has completed (purged errors)
[2026-05-01 03:42:36] 2026-05-01 01:41:47,952 | INFO     | overall cleanup function is called
[2026-05-01 03:42:36] 2026-05-01 01:41:48,957 | INFO     | --- collectZombieJob: --- 10, [100508]
[2026-05-01 03:42:36] 2026-05-01 01:41:48,957 | INFO     | zombie collector waiting for pid 100508
[2026-05-01 03:42:36] 2026-05-01 01:41:48,957 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-01 03:42:36] 2026-05-01 01:41:48,957 | INFO     | collected zombie processes
[2026-05-01 03:42:36] 2026-05-01 01:41:48,957 | INFO     | will attempt to kill all subprocesses of pid=100508
[2026-05-01 03:42:36] 2026-05-01 01:41:48,986 | INFO     | process IDs to be killed: [100508] (in reverse order)
[2026-05-01 03:42:36] 2026-05-01 01:41:49,010 | WARNING  | found no corresponding commands to process id(s)
[2026-05-01 03:42:36] 2026-05-01 01:41:49,010 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-01 03:42:36] 2026-05-01 01:41:49,011 | INFO     | did not find any defunct processes belonging to 100508
[2026-05-01 03:42:36] 2026-05-01 01:41:49,012 | INFO     | did not find any defunct processes belonging to 100508
[2026-05-01 03:42:36] 2026-05-01 01:41:49,012 | INFO     | Ready for new job
[2026-05-01 03:42:36] 2026-05-01 01:41:49,013 | INFO     | ***************************************
[2026-05-01 03:42:36] 2026-05-01 01:41:49,013 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-01 03:42:36] 2026-05-01 01:41:49,013 | INFO     | ***************************************
[2026-05-01 03:42:36] 2026-05-01 01:41:49,013 | INFO     | 
[2026-05-01 03:42:36] 2026-05-01 01:41:49,013 | INFO     | architecture information:
[2026-05-01 03:42:36] 2026-05-01 01:41:49,013 | INFO     | executing command: cat /etc/os-release
[2026-05-01 03:42:36] 2026-05-01 01:41:49,022 | INFO     | cat /etc/os-release:
[2026-05-01 03:42:36] NAME="CentOS Linux"
[2026-05-01 03:42:36] VERSION="7 (Core)"
[2026-05-01 03:42:36] ID="centos"
[2026-05-01 03:42:36] ID_LIKE="rhel fedora"
[2026-05-01 03:42:36] VERSION_ID="7"
[2026-05-01 03:42:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-01 03:42:36] ANSI_COLOR="0;31"
[2026-05-01 03:42:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-01 03:42:36] HOME_URL="https://www.centos.org/"
[2026-05-01 03:42:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-01 03:42:36] 
[2026-05-01 03:42:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-01 03:42:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-01 03:42:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-01 03:42:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-01 03:42:36] 
[2026-05-01 03:42:36] 2026-05-01 01:41:49,022 | INFO     | ***************************************
[2026-05-01 03:42:36] 2026-05-01 01:41:49,525 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-05-01 03:42:36] 2026-05-01 01:41:49,535 | INFO     | sufficient remaining disk space (378058833920 B)
[2026-05-01 03:42:36] 2026-05-01 01:41:49,535 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-01 03:42:36] 2026-05-01 01:41:49,535 | INFO     | current server update state: UPDATING_FINAL
[2026-05-01 03:42:36] 2026-05-01 01:41:49,536 | INFO     | update_server=False
[2026-05-01 03:42:36] 2026-05-01 01:41:49,536 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-01 03:42:36] 2026-05-01 01:41:49,536 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-01 03:42:36] 2026-05-01 01:41:49,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-01 03:42:36] 2026-05-01 01:41:49,846 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-01 03:42:36] 2026-05-01 01:41:49,973 | INFO     | all data control threads have been joined
[2026-05-01 03:42:36] 2026-05-01 01:41:50,179 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-01 03:42:36] 2026-05-01 01:41:50,179 | INFO     | aborting loop
[2026-05-01 03:42:36] 2026-05-01 01:41:50,328 | INFO     | all job control threads have been joined
[2026-05-01 03:42:36] 2026-05-01 01:41:50,539 | INFO     | [job] retrieve thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:50,539 | INFO     | [job] queue monitor thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:50,701 | INFO     | [data] copytool_in thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:50,913 | INFO     | [payload] validate_post thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:50,979 | INFO     | [data] control thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:50,983 | INFO     | all payload control threads have been joined
[2026-05-01 03:42:36] 2026-05-01 01:41:51,010 | INFO     | [payload] failed_post thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:51,184 | INFO     | [job] job monitor thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:51,334 | INFO     | [job] control thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:51,852 | INFO     | [data] copytool_out thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:51,989 | INFO     | [payload] control thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:51,989 | INFO     | [payload] execute_payloads thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:52,010 | INFO     | [job] validate thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:52,016 | INFO     | [job] create_data_payload thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:52,042 | INFO     | [payload] validate_pre thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:41:53,543 | INFO     | [data] queue_monitor thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:42:00,208 | INFO     | job.realtimelogging is not enabled
[2026-05-01 03:42:36] 2026-05-01 01:42:01,214 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-01 03:42:36] 2026-05-01 01:42:20,541 | INFO     | PID=96084 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-01 03:42:36] 2026-05-01 01:42:20,541 | INFO     | found 0 job(s) in 20 queues
[2026-05-01 03:42:36] 2026-05-01 01:42:20,541 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-01 03:42:36] 2026-05-01 01:42:20,542 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-01 03:42:36] 2026-05-01 01:42:30,117 | INFO     | [monitor] cgroup control has ended
[2026-05-01 03:42:36] 2026-05-01 01:42:31,626 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139832055125824)>', '<ExcThread(monitor, started 139831418009344)>']
[2026-05-01 03:42:36] 2026-05-01 01:42:32,603 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-01 03:42:36] 2026-05-01 01:42:32,603 | INFO     | [monitor] control thread has ended
[2026-05-01 03:42:36] 2026-05-01 01:42:36,651 | INFO     | all workflow threads have been joined
[2026-05-01 03:42:36] 2026-05-01 01:42:36,651 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-01 03:42:36] 2026-05-01 01:42:36,651 | INFO     | traces error code: 0
[2026-05-01 03:42:36] 2026-05-01 01:42:36,651 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-01 03:42:36] 2026-05-01 01:42:36,700 [wrapper] ==== pilot stdout END ====
[2026-05-01 03:42:36] 2026-05-01 01:42:36,702 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-01 03:42:36] 2026-05-01 01:42:36,704 [wrapper] pilotpid: 96084
[2026-05-01 03:42:36] 2026-05-01 01:42:36,707 [wrapper] Pilot exit status: 0
[2026-05-01 03:42:36] 2026-05-01 01:42:36,714 [wrapper] pandaids: 7122780655
[2026-05-01 03:42:36] 2026-05-01 01:42:36,730 [wrapper] cleanup supervisor_pilot  106251 96085
[2026-05-01 03:42:36] 2026-05-01 01:42:36,732 [wrapper] Test setup, not cleaning
[2026-05-01 03:42:36] 2026-05-01 01:42:36,734 [wrapper] apfmon messages muted
[2026-05-01 03:42:36] 2026-05-01 01:42:36,737 [wrapper] ==== wrapper stdout END ====
[2026-05-01 03:42:36] 2026-05-01 01:42:36,739 [wrapper] ==== wrapper stderr END ====
[2026-05-01 03:42:36]  *** Error codes and diagnostics ***
[2026-05-01 03:42:36]     "exeErrorCode": 0,
[2026-05-01 03:42:36]     "pilotErrorCode": 0,
[2026-05-01 03:42:36]  *** Listing of results directory ***
[2026-05-01 03:42:36] total 488844
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc    683926 Apr 30 15:39 pilot3.tar.gz
[2026-05-01 03:42:36] -rwx------ 1 boinc boinc     36322 Apr 30 15:40 runpilot2-wrapper.sh
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc      5631 Apr 30 15:41 queuedata.json
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc       100 May  1 01:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-01 03:42:36] -rwxr-xr-x 1 boinc boinc      7986 May  1 01:37 run_atlas
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc       105 May  1 01:37 job.xml
[2026-05-01 03:42:36] -rw-r--r-- 2 boinc boinc 314250751 May  1 01:37 EVNT.50017236._000021.pool.root.1
[2026-05-01 03:42:36] -rw-r--r-- 2 boinc boinc    697414 May  1 01:37 input.tar.gz
[2026-05-01 03:42:36] -rw-r--r-- 2 boinc boinc     15667 May  1 01:37 start_atlas.sh
[2026-05-01 03:42:36] drwxrwx--x 2 boinc boinc      4096 May  1 01:37 shared
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc         0 May  1 01:37 boinc_setup_complete
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc      6364 May  1 01:37 init_data.xml
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc         0 May  1 01:37 boinc_lockfile
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc      2563 May  1 01:37 pandaJob.out
[2026-05-01 03:42:36] -rw------- 1 boinc boinc   1001806 May  1 01:37 agis_schedconf.cvmfs.json
[2026-05-01 03:42:36] -rw------- 1 boinc boinc   1510091 May  1 01:37 agis_ddmendpoints.agis.ALL.json
[2026-05-01 03:42:36] -rw------- 1 boinc boinc       425 May  1 01:37 workernode_map.json
[2026-05-01 03:42:36] drwx------ 5 boinc boinc      4096 May  1 01:37 pilot3
[2026-05-01 03:42:36] -rw------- 1 boinc boinc 180271622 May  1 03:41 HITS.50017241._000508.pool.root.1
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc       487 May  1 03:41 boinc_task_state.xml
[2026-05-01 03:42:36] -rw------- 1 boinc boinc      1014 May  1 03:41 memory_monitor_summary.json
[2026-05-01 03:42:36] -rw------- 1 boinc boinc    249179 May  1 03:41 log.50017241._000508.job.log.tgz.1
[2026-05-01 03:42:36] -rw------- 1 boinc boinc      6315 May  1 03:41 heartbeat_new.json
[2026-05-01 03:42:36] -rw------- 1 boinc boinc      6206 May  1 03:41 heartbeat.json
[2026-05-01 03:42:36] -rw------- 1 boinc boinc        95 May  1 03:42 pilot_heartbeat.json
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc      8192 May  1 03:42 boinc_mmap_file
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc        27 May  1 03:42 wrapper_checkpoint.txt
[2026-05-01 03:42:36] -rw------- 1 boinc boinc      4821 May  1 03:42 pilotlog.txt
[2026-05-01 03:42:36] -rw------- 1 boinc boinc    711281 May  1 03:42 log.50017241._000508.job.log.1
[2026-05-01 03:42:36] -rw------- 1 boinc boinc       357 May  1 03:42 output.list
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc       410 May  1 03:42 runtime_log
[2026-05-01 03:42:36] -rw------- 1 boinc boinc    983040 May  1 03:42 result.tar.gz
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc      8534 May  1 03:42 runtime_log.err
[2026-05-01 03:42:36] -rw------- 1 boinc boinc       661 May  1 03:42 5bd69ea3dc14.diag
[2026-05-01 03:42:36] -rw-r--r-- 1 boinc boinc     12310 May  1 03:42 stderr.txt
[2026-05-01 03:42:36] HITS file was successfully produced:
[2026-05-01 03:42:36] -rw------- 1 boinc boinc 180271622 May  1 03:41 shared/HITS.pool.root.1
[2026-05-01 03:42:36]  *** Contents of shared directory: ***
[2026-05-01 03:42:36] total 484604
[2026-05-01 03:42:36] -rw-r--r-- 2 boinc boinc 314250751 May  1 01:37 ATLAS.root_0
[2026-05-01 03:42:36] -rw-r--r-- 2 boinc boinc    697414 May  1 01:37 input.tar.gz
[2026-05-01 03:42:36] -rw-r--r-- 2 boinc boinc     15667 May  1 01:37 start_atlas.sh
[2026-05-01 03:42:36] -rw------- 1 boinc boinc 180271622 May  1 03:41 HITS.pool.root.1
[2026-05-01 03:42:36] -rw------- 1 boinc boinc    983040 May  1 03:42 result.tar.gz
03:42:37 (92043): run_atlas exited; CPU time 20915.566610
03:42:37 (92043): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN