Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:49:40 (839998): wrapper (7.7.26015): starting
12:49:40 (839998): wrapper: running run_atlas (--nthreads 4)
[2026-05-02 12:49:40] Arguments: --nthreads 4
[2026-05-02 12:49:40] Threads: 4
[2026-05-02 12:49:40] Checking for CVMFS
[2026-05-02 12:49:40] No cvmfs_config command found, will try listing directly
[2026-05-02 12:49:40] CVMFS is ok
[2026-05-02 12:49:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-02 12:49:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-02 12:49:40] Further information can be found at the LHC@home message board.
[2026-05-02 12:49:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-02 12:49:40] Checking for apptainer binary...
[2026-05-02 12:49:40] which: no apptainer in ((null))
[2026-05-02 12:49:40] apptainer is not installed, using version from CVMFS
[2026-05-02 12:49:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-02 12:49:40] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot68/slots/13/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2026-05-02 12:49:40] apptainer works
[2026-05-02 12:49:40] Set ATHENA_PROC_NUMBER=4
[2026-05-02 12:49:40] Set ATHENA_CORE_NUMBER=4
[2026-05-02 12:49:40] Starting ATLAS job with PandaID=7122774985
[2026-05-02 12:49:40] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot68/slots/13 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-02 15:37:35]  *** The last 200 lines of the pilot log: ***
[2026-05-02 15:37:35] 2026-05-02 13:36:25,314 | INFO     | this job has now completed (state=finished)
[2026-05-02 15:37:35] 2026-05-02 13:36:25,314 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-02 15:37:35] 2026-05-02 13:36:25,315 | INFO     | log transfer has been attempted: DONE
[2026-05-02 15:37:35] 2026-05-02 13:36:25,315 | INFO     | job 7122774985 has finished - writing final server update
[2026-05-02 15:37:35] 2026-05-02 13:36:25,316 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_776954/.job.ad'
[2026-05-02 15:37:35] 2026-05-02 13:36:25,317 | INFO     | total number of processed events: 400 (read)
[2026-05-02 15:37:35] 2026-05-02 13:36:25,350 | INFO     | using path: /var/lib/boinc/var/slot68/slots/13/PanDA_Pilot-7122774985/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 15:37:35] 2026-05-02 13:36:25,351 | INFO     | extracted standard info from prmon json
[2026-05-02 15:37:35] 2026-05-02 13:36:25,351 | INFO     | extracted standard memory fields from prmon json
[2026-05-02 15:37:35] 2026-05-02 13:36:25,352 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-02 15:37:35] 2026-05-02 13:36:25,352 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-02 15:37:35] 2026-05-02 13:36:25,355 | INFO     | fitting pss+swap vs Time
[2026-05-02 15:37:35] 2026-05-02 13:36:25,355 | INFO     | sum of square deviations: 1342841922.0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,356 | INFO     | sum of deviations: 17608894034.0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,356 | INFO     | mean x (centered): 0.0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,357 | INFO     | mean y: 2320628.9509202456
[2026-05-02 15:37:35] 2026-05-02 13:36:25,357 | INFO     | intersect: 2320628.9509202456
[2026-05-02 15:37:35] 2026-05-02 13:36:25,357 | INFO     | chi2: 1.4506843981287167
[2026-05-02 15:37:35] 2026-05-02 13:36:25,357 | INFO     | sum of square deviations: 1223016419.5
[2026-05-02 15:37:35] 2026-05-02 13:36:25,358 | INFO     | sum of deviations: 17111729485.499998
[2026-05-02 15:37:35] 2026-05-02 13:36:25,359 | INFO     | mean x (centered): 0.0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,359 | INFO     | mean y: 2319995.7784810127
[2026-05-02 15:37:35] 2026-05-02 13:36:25,359 | INFO     | intersect: 2319995.7784810127
[2026-05-02 15:37:35] 2026-05-02 13:36:25,359 | INFO     | chi2: 1.4520657345554373
[2026-05-02 15:37:35] 2026-05-02 13:36:25,359 | INFO     | current chi2=1.4520657345554373 (change=-0.09521963760707619 %)
[2026-05-02 15:37:35] 2026-05-02 13:36:25,359 | INFO     | right removable region: 157
[2026-05-02 15:37:35] 2026-05-02 13:36:25,359 | INFO     | sum of square deviations: 1223016419.5
[2026-05-02 15:37:35] 2026-05-02 13:36:25,360 | INFO     | sum of deviations: -5202019701.5
[2026-05-02 15:37:35] 2026-05-02 13:36:25,361 | INFO     | mean x (centered): 0.0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,361 | INFO     | mean y: 2349244.018987342
[2026-05-02 15:37:35] 2026-05-02 13:36:25,361 | INFO     | intersect: 2349244.018987342
[2026-05-02 15:37:35] 2026-05-02 13:36:25,361 | INFO     | chi2: 0.005479382174855666
[2026-05-02 15:37:35] 2026-05-02 13:36:25,361 | INFO     | current chi2=0.005479382174855666 (change=99.62228985284989 %)
[2026-05-02 15:37:35] 2026-05-02 13:36:25,361 | INFO     | sum of square deviations: 1110539892.0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,362 | INFO     | sum of deviations: -4977992778.999999
[2026-05-02 15:37:35] 2026-05-02 13:36:25,362 | INFO     | mean x (centered): 0.0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,362 | INFO     | mean y: 2348935.640522876
[2026-05-02 15:37:35] 2026-05-02 13:36:25,363 | INFO     | intersect: 2348935.640522876
[2026-05-02 15:37:35] 2026-05-02 13:36:25,363 | INFO     | chi2: 0.0052959760513674615
[2026-05-02 15:37:35] 2026-05-02 13:36:25,364 | INFO     | current chi2=0.0052959760513674615 (change=3.3472044408553363 %)
[2026-05-02 15:37:35] 2026-05-02 13:36:25,364 | INFO     | left removable region: 10
[2026-05-02 15:37:35] 2026-05-02 13:36:25,364 | INFO     | sum of square deviations: 984941258.0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,365 | INFO     | sum of deviations: -4749565591.0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,365 | INFO     | mean x (centered): 0.0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,365 | INFO     | mean y: 2349268.156462585
[2026-05-02 15:37:35] 2026-05-02 13:36:25,365 | INFO     | intersect: 2349268.156462585
[2026-05-02 15:37:35] 2026-05-02 13:36:25,365 | INFO     | chi2: 0.005114494771484665
[2026-05-02 15:37:35] 2026-05-02 13:36:25,366 | INFO     | current memory leak: -4.82 B/s (using 147 data points, chi2=0.01)
[2026-05-02 15:37:35] 2026-05-02 13:36:25,366 | INFO     | could have reported an average CPU frequency of 2662 MHz (9 samples)
[2026-05-02 15:37:35] 2026-05-02 13:36:25,366 | INFO     | ..............................
[2026-05-02 15:37:35] 2026-05-02 13:36:25,367 | INFO     | . Timing measurements:
[2026-05-02 15:37:35] 2026-05-02 13:36:25,367 | INFO     | . get job = 0 s
[2026-05-02 15:37:35] 2026-05-02 13:36:25,367 | INFO     | . initial setup = 11 s
[2026-05-02 15:37:35] 2026-05-02 13:36:25,367 | INFO     | . payload setup = 21 s
[2026-05-02 15:37:35] 2026-05-02 13:36:25,367 | INFO     | . stage-in = 0 s
[2026-05-02 15:37:35] 2026-05-02 13:36:25,367 | INFO     | . payload execution = 9940 s
[2026-05-02 15:37:35] 2026-05-02 13:36:25,367 | INFO     | . stage-out = 0 s
[2026-05-02 15:37:35] 2026-05-02 13:36:25,367 | INFO     | . log creation = 0 s
[2026-05-02 15:37:35] 2026-05-02 13:36:25,367 | INFO     | ..............................
[2026-05-02 15:37:35] 2026-05-02 13:36:25,467 | INFO     | 
[2026-05-02 15:37:35] 2026-05-02 13:36:25,467 | INFO     | job summary report
[2026-05-02 15:37:35] 2026-05-02 13:36:25,468 | INFO     | --------------------------------------------------
[2026-05-02 15:37:35] 2026-05-02 13:36:25,468 | INFO     | PanDA job id: 7122774985
[2026-05-02 15:37:35] 2026-05-02 13:36:25,468 | INFO     | task id: 50017065
[2026-05-02 15:37:35] 2026-05-02 13:36:25,468 | INFO     | errors: (none)
[2026-05-02 15:37:35] 2026-05-02 13:36:25,468 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-02 15:37:35] 2026-05-02 13:36:25,468 | INFO     | pilot state: finished 
[2026-05-02 15:37:35] 2026-05-02 13:36:25,468 | INFO     | transexitcode: 0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,468 | INFO     | exeerrorcode: 0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,468 | INFO     | exeerrordiag: 
[2026-05-02 15:37:35] 2026-05-02 13:36:25,468 | INFO     | exitcode: 0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,468 | INFO     | exitmsg: OK
[2026-05-02 15:37:35] 2026-05-02 13:36:25,468 | INFO     | cpuconsumptiontime: 36785 s
[2026-05-02 15:37:35] 2026-05-02 13:36:25,469 | INFO     | nevents: 400
[2026-05-02 15:37:35] 2026-05-02 13:36:25,469 | INFO     | neventsw: 0
[2026-05-02 15:37:35] 2026-05-02 13:36:25,469 | INFO     | pid: 859959
[2026-05-02 15:37:35] 2026-05-02 13:36:25,469 | INFO     | pgrp: 859959
[2026-05-02 15:37:35] 2026-05-02 13:36:25,469 | INFO     | corecount: 4
[2026-05-02 15:37:35] 2026-05-02 13:36:25,469 | INFO     | event service: False
[2026-05-02 15:37:35] 2026-05-02 13:36:25,469 | INFO     | sizes: {0: 2275275, 1: 2277104, 2: 2277104, 9965: 2306144, 9966: 2315166, 9969: 2315222, 9970: 2315608}
[2026-05-02 15:37:35] 2026-05-02 13:36:25,469 | INFO     | --------------------------------------------------
[2026-05-02 15:37:35] 2026-05-02 13:36:25,469 | INFO     | 
[2026-05-02 15:37:35] 2026-05-02 13:36:25,469 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot68/slots/13
[2026-05-02 15:37:35] 2026-05-02 13:36:25,558 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,559 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,559 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,559 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,559 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,559 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,559 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,559 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,559 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,560 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,560 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,560 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,560 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,560 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,560 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,560 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,560 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-02 15:37:35] 2026-05-02 13:36:25,560 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,561 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-02 15:37:35] 2026-05-02 13:36:25,561 | INFO     | job 7122774985 has completed (purged errors)
[2026-05-02 15:37:35] 2026-05-02 13:36:25,561 | INFO     | overall cleanup function is called
[2026-05-02 15:37:35] 2026-05-02 13:36:26,061 | WARNING  | process 859959 can no longer be monitored (due to stat problems) - aborting
[2026-05-02 15:37:35] 2026-05-02 13:36:26,569 | INFO     | --- collectZombieJob: --- 10, [859959]
[2026-05-02 15:37:35] 2026-05-02 13:36:26,569 | INFO     | zombie collector waiting for pid 859959
[2026-05-02 15:37:35] 2026-05-02 13:36:26,569 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-02 15:37:35] 2026-05-02 13:36:26,569 | INFO     | collected zombie processes
[2026-05-02 15:37:35] 2026-05-02 13:36:26,570 | INFO     | will attempt to kill all subprocesses of pid=859959
[2026-05-02 15:37:35] 2026-05-02 13:36:27,548 | INFO     | PID=848471 has CPU usage=19.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-02 15:37:35] 2026-05-02 13:36:27,548 | INFO     | .. there are 24 such processes running
[2026-05-02 15:37:35] 2026-05-02 13:36:27,564 | INFO     | using path: /var/lib/boinc/var/slot68/slots/13/memory_monitor_summary.json (trf name=prmon)
[2026-05-02 15:37:35] 2026-05-02 13:36:28,514 | INFO     | process IDs to be killed: [859959] (in reverse order)
[2026-05-02 15:37:35] 2026-05-02 13:36:28,758 | INFO     | number of running child processes to parent process 859959: 1
[2026-05-02 15:37:35] 2026-05-02 13:36:28,758 | INFO     | maximum number of monitored processes: 6
[2026-05-02 15:37:35] 2026-05-02 13:36:28,758 | INFO     | aborting job monitoring since job object (job id=7122774985) has expired
[2026-05-02 15:37:35] 2026-05-02 13:36:28,940 | WARNING  | found no corresponding commands to process id(s)
[2026-05-02 15:37:35] 2026-05-02 13:36:28,940 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-02 15:37:35] 2026-05-02 13:36:28,977 | INFO     | did not find any defunct processes belonging to 859959
[2026-05-02 15:37:35] 2026-05-02 13:36:29,011 | INFO     | did not find any defunct processes belonging to 859959
[2026-05-02 15:37:35] 2026-05-02 13:36:29,011 | INFO     | Ready for new job
[2026-05-02 15:37:35] 2026-05-02 13:36:29,013 | INFO     | ***************************************
[2026-05-02 15:37:35] 2026-05-02 13:36:29,013 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-02 15:37:35] 2026-05-02 13:36:29,013 | INFO     | ***************************************
[2026-05-02 15:37:35] 2026-05-02 13:36:29,013 | INFO     | 
[2026-05-02 15:37:35] 2026-05-02 13:36:29,022 | INFO     | architecture information:
[2026-05-02 15:37:35] 2026-05-02 13:36:29,022 | INFO     | executing command: cat /etc/os-release
[2026-05-02 15:37:35] 2026-05-02 13:36:29,049 | INFO     | cat /etc/os-release:
[2026-05-02 15:37:35] NAME="CentOS Linux"
[2026-05-02 15:37:35] VERSION="7 (Core)"
[2026-05-02 15:37:35] ID="centos"
[2026-05-02 15:37:35] ID_LIKE="rhel fedora"
[2026-05-02 15:37:35] VERSION_ID="7"
[2026-05-02 15:37:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-02 15:37:35] ANSI_COLOR="0;31"
[2026-05-02 15:37:35] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-02 15:37:35] HOME_URL="https://www.centos.org/"
[2026-05-02 15:37:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-02 15:37:35] 
[2026-05-02 15:37:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-02 15:37:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-02 15:37:35] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-02 15:37:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-02 15:37:35] 
[2026-05-02 15:37:35] 2026-05-02 13:36:29,050 | INFO     | ***************************************
[2026-05-02 15:37:35] 2026-05-02 13:36:29,555 | INFO     | executing command: df -mP /var/lib/boinc/var/slot68/slots/13
[2026-05-02 15:37:35] 2026-05-02 13:36:29,584 | INFO     | sufficient remaining disk space (187349073920 B)
[2026-05-02 15:37:35] 2026-05-02 13:36:29,584 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-02 15:37:35] 2026-05-02 13:36:29,585 | INFO     | current server update state: UPDATING_FINAL
[2026-05-02 15:37:35] 2026-05-02 13:36:29,585 | INFO     | update_server=False
[2026-05-02 15:37:35] 2026-05-02 13:36:29,585 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-02 15:37:35] 2026-05-02 13:36:29,585 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-02 15:37:35] 2026-05-02 13:36:29,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-02 15:37:35] 2026-05-02 13:36:29,586 | INFO     | will abort loop
[2026-05-02 15:37:35] 2026-05-02 13:36:29,606 | INFO     | all job control threads have been joined
[2026-05-02 15:37:35] 2026-05-02 13:36:29,771 | INFO     | all data control threads have been joined
[2026-05-02 15:37:35] 2026-05-02 13:36:29,947 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-02 15:37:35] 2026-05-02 13:36:30,485 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-02 15:37:35] 2026-05-02 13:36:30,585 | INFO     | all payload control threads have been joined
[2026-05-02 15:37:35] 2026-05-02 13:36:30,590 | INFO     | [job] retrieve thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:30,591 | INFO     | [job] job monitor thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:30,611 | INFO     | [job] control thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:30,776 | INFO     | [data] control thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:30,793 | INFO     | [payload] validate_post thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:31,340 | INFO     | [job] create_data_payload thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:31,489 | INFO     | [job] queue monitor thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:31,503 | INFO     | [payload] validate_pre thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:31,571 | INFO     | [payload] execute_payloads thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:31,590 | INFO     | [payload] control thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:31,591 | INFO     | [data] copytool_out thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:31,634 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:31,951 | INFO     | [payload] failed_post thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:32,031 | INFO     | [data] copytool_in thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:32,046 | INFO     | [job] validate thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:36:33,952 | INFO     | [data] queue_monitor thread has finished
[2026-05-02 15:37:35] 2026-05-02 13:37:00,633 | INFO     | PID=848471 has CPU usage=10.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-02 15:37:35] 2026-05-02 13:37:00,633 | INFO     | .. there are 24 such processes running
[2026-05-02 15:37:35] 2026-05-02 13:37:00,635 | INFO     | found 0 job(s) in 20 queues
[2026-05-02 15:37:35] 2026-05-02 13:37:00,635 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-02 15:37:35] 2026-05-02 13:37:00,635 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-02 15:37:35] 2026-05-02 13:37:29,442 | INFO     | [monitor] cgroup control has ended
[2026-05-02 15:37:35] 2026-05-02 13:37:29,908 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22459596638016)>', '<ExcThread(monitor, started 22459364693760)>']
[2026-05-02 15:37:35] 2026-05-02 13:37:30,782 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-02 15:37:35] 2026-05-02 13:37:30,782 | INFO     | [monitor] control thread has ended
[2026-05-02 15:37:35] 2026-05-02 13:37:34,933 | INFO     | all workflow threads have been joined
[2026-05-02 15:37:35] 2026-05-02 13:37:34,933 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-02 15:37:35] 2026-05-02 13:37:34,934 | INFO     | traces error code: 0
[2026-05-02 15:37:35] 2026-05-02 13:37:34,934 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-02 15:37:35] 2026-05-02 13:37:35,080 [wrapper] ==== pilot stdout END ====
[2026-05-02 15:37:35] 2026-05-02 13:37:35,084 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-02 15:37:35] 2026-05-02 13:37:35,087 [wrapper] pilotpid: 848471
[2026-05-02 15:37:35] 2026-05-02 13:37:35,091 [wrapper] Pilot exit status: 0
[2026-05-02 15:37:35] 2026-05-02 13:37:35,106 [wrapper] pandaids: 7122774985
[2026-05-02 15:37:35] 2026-05-02 13:37:35,299 [wrapper] cleanup supervisor_pilot 1252070 848472
[2026-05-02 15:37:35] 2026-05-02 13:37:35,305 [wrapper] Test setup, not cleaning
[2026-05-02 15:37:35] 2026-05-02 13:37:35,308 [wrapper] apfmon messages muted
[2026-05-02 15:37:35] 2026-05-02 13:37:35,312 [wrapper] ==== wrapper stdout END ====
[2026-05-02 15:37:35] 2026-05-02 13:37:35,316 [wrapper] ==== wrapper stderr END ====
[2026-05-02 15:37:35]  *** Error codes and diagnostics ***
[2026-05-02 15:37:35]     "exeErrorCode": 0,
[2026-05-02 15:37:35]     "pilotErrorCode": 0,
[2026-05-02 15:37:35]  *** Listing of results directory ***
[2026-05-02 15:37:35] total 484704
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc    683926 Apr 30 13:26 pilot3.tar.gz
[2026-05-02 15:37:35] -rwx------. 1 boinc boinc     36322 Apr 30 13:53 runpilot2-wrapper.sh
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc      5631 Apr 30 13:54 queuedata.json
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc       100 May  2 12:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-02 15:37:35] -rwxr-xr-x. 1 boinc boinc      7986 May  2 12:49 run_atlas
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc       105 May  2 12:49 job.xml
[2026-05-02 15:37:35] -rw-r--r--. 2 boinc boinc 322992570 May  2 12:49 EVNT.50017059._000014.pool.root.1
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc      6612 May  2 12:49 init_data.xml
[2026-05-02 15:37:35] -rw-r--r--. 2 boinc boinc     15667 May  2 12:49 start_atlas.sh
[2026-05-02 15:37:35] drwxrwx--x. 2 boinc boinc      4096 May  2 12:49 shared
[2026-05-02 15:37:35] -rw-r--r--. 2 boinc boinc    697392 May  2 12:49 input.tar.gz
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc         0 May  2 12:49 boinc_lockfile
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc      2508 May  2 12:49 pandaJob.out
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc   1002992 May  2 12:50 agis_schedconf.cvmfs.json
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc   1508687 May  2 12:50 agis_ddmendpoints.agis.ALL.json
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc       443 May  2 12:50 workernode_map.json
[2026-05-02 15:37:35] drwx------. 5 boinc boinc      4096 May  2 12:50 pilot3
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc 166762066 May  2 15:35 HITS.50017065._000348.pool.root.1
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc       488 May  2 15:35 boinc_task_state.xml
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc      1029 May  2 15:36 memory_monitor_summary.json
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc    309101 May  2 15:36 log.50017065._000348.job.log.tgz.1
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc      6368 May  2 15:36 heartbeat_new.json
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc      6259 May  2 15:36 heartbeat.json
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc        95 May  2 15:37 pilot_heartbeat.json
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc      8192 May  2 15:37 boinc_mmap_file
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc        27 May  2 15:37 wrapper_checkpoint.txt
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc      4836 May  2 15:37 pilotlog.txt
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc    922059 May  2 15:37 log.50017065._000348.job.log.1
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc       357 May  2 15:37 output.list
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc       410 May  2 15:37 runtime_log
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc   1249280 May  2 15:37 result.tar.gz
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc      8845 May  2 15:37 runtime_log.err
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc       665 May  2 15:37 42d36e0a69aa.diag
[2026-05-02 15:37:35] -rw-r--r--. 1 boinc boinc      1893 May  2 15:37 stderr.txt
[2026-05-02 15:37:35] HITS file was successfully produced:
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc 166762066 May  2 15:35 shared/HITS.pool.root.1
[2026-05-02 15:37:35]  *** Contents of shared directory: ***
[2026-05-02 15:37:35] total 480208
[2026-05-02 15:37:35] -rw-r--r--. 2 boinc boinc 322992570 May  2 12:49 ATLAS.root_0
[2026-05-02 15:37:35] -rw-r--r--. 2 boinc boinc     15667 May  2 12:49 start_atlas.sh
[2026-05-02 15:37:35] -rw-r--r--. 2 boinc boinc    697392 May  2 12:49 input.tar.gz
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc 166762066 May  2 15:35 HITS.pool.root.1
[2026-05-02 15:37:35] -rw-------. 1 boinc boinc   1249280 May  2 15:37 result.tar.gz
15:38:48 (839998): run_atlas exited; CPU time 37334.970579
15:38:48 (839998): called boinc_finish(0)

</stderr_txt>
]]>

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